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Human Genome Issue HG-167

Summary:
GeneID: 56127 (PCDHB9), poor quality (includes component misassembly)
Description:
There is a possible functional difference between the proteins encoded by RefSeq NM_019119.3 (PCDHB9) and the genomic region to which it aligns.
Status:
Resolved (GRC Resolved by Experimental Method)
Type:
Clone Problem
Last updated:
2015-07-23
Affects version:
NCBI36
Fix version:
GRCh37.p13, GRCh38
Resolution:
The CHORI-17 TPF has been uploaded to the Chromosome 5 TPF and the Chromosome 5 patches TPF.

Patches and alternate loci

Scaffold type:
FIX patch to GRCh37
Comment:
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. This patch is adds a single haplotype CHORI-17 tilepath to improve alignments in the region of the PCDHB@ locus of the Reference Assembly. One specific update this patch provides is the correction of a deletion in PCDHB9 (GeneID: 56127) (dbSNP:rs33974901).
Revision history of patches and alts for HG-167
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCh37.p13 FIX HG1082_HG167_PATCH KE332497.1 NW_004775428.1 PCDHB

Locations and genomic context

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  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)