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Human Genome Issue HG-1462

Summary:
Fix Patch for ampliconic region of Chromosome X (GRCh37) near component AL953862.4
Description:
Ampliconic region of Chromosome X (NC_000023.10:112,660,000-113,520,000) consists of multiple haplotypes.
Status:
Resolved (GRC Resolved by Experimental Method)
Type:
Path Problem
Last updated:
2014-10-01
Affects version:
GRCh37
Fix version:
GRCh37.p10, GRCh38
Resolution:
This new TPF has been uploaded to the patches TPF and chromosome TPF.

Patches and alternate loci

Scaffold type:
FIX patch to GRCh37
Comment:
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. The purpose of this patch is to create a single haplotype of ampliconic sequence (RPCI-11) between components AL953862.4 and AC005000.2 of GRCh37 (NC_000023.10). This patch also extends into the gap adjacent to AL953862.4 in NC_000023.10.
Revision history of patches and alts for HG-1462
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCh37.p10 FIX HG1462_PATCH JH806601.1 NW_004070891.1 REGION93

Locations and genomic context

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  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)