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Human Genome Issue HG-1436

Summary:
An RP11 clone pathway is being sequenced for an ampliconic region on Chromosome X between components Z98304.1 and AF196972.1 of GRCh37.
Description:
An RP11 clone pathway is being sequenced for an ampliconic region on Chromosome X between components Z98304.1 and AF196972.1 of GRCh37.
Status:
Resolved (GRC Resolved by Experimental Method)
Type:
Path Problem
Last updated:
2015-01-05
Affects version:
GRCh37
Fix version:
GRCh37.p10, GRCh37.p11, GRCh37.p12, GRCh38
Resolution:
This new TPF has been uploaded to the patches TPF and chromosome TPF.

Patches and alternate loci

Scaffold type:
FIX patch to GRCh37
Comment:
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. The purpose of this patch is to create a single haplotype of ampliconic sequence (RPCI-11) between components Z98304.1 and BX546463.3 of GRCh37 (NC_000023.10). This patch also extends into the gap adjacent to BX546463.3 in GRCh37. This patch also changes the gap size between AC233302.2 and AC142497.3 to 130kb by pulsed-field gel electrophoresis.
Revision history of patches and alts for HG-1436
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCh37.p11 FIX HG1436_HG1432_PATCH JH806590.2 NW_004070880.2 DGKK_REGION98
GRCh37.p10 FIX HG1436_HG1432_PATCH JH806590.1 NW_004070880.1 DGKK_REGION98

Locations and genomic context

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  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)