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Human Genome Issue HG-1184

Summary:
NOVEL patch created to capture sequence from AC231988.2 and AC231982.2 not represented in reference chromosome
Description:
NOVEL patch GL383571.1 created to capture sequence from AC231988.2 and AC231982.2 not represented in reference chromosome
Status:
Resolved (GRC Resolved by Experimental Method)
Type:
Variation
Last updated:
2015-07-23
Experiment type:
Clone Sequencing
Affects version:
GRCh37
Fix version:
GRCh37.p2
Resolution:
FO681533.2 has been added to the TPF between AC231988.2 and AC231982.2 partially closing the gap and representing the part of the missing sequence variant, This gap closure will be pursued further in HG-1572

Patches and alternate loci

Scaffold type:
ALT in GRCh38
Comment:
In this scaffold, AC231988.2 and AC231982.2 represent sequence variants containing approximately 14 kb and approximately 6 kb that do not align to GRCh37 NC_000018.9 component AC110597.7. The two fosmids do not overlap each other, suggesting that additional sequence is absent from the reference chromosome at this location. A default 50 kb gap between the fosmids was inserted for the scaffold.
Revision history of patches and alts for HG-1184
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCh38 ALT HSCHR18_2_CTG2 GL383571.1 NW_003315960.1 REGION33
GRCh37.p2 NOVEL HSCHR18_2_CTG2 GL383571.1 NW_003315960.1 REGION33

Locations and genomic context

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  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)