Sample Projects and Workspaces for Genome Workbench
- Barcode Project
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This workspace contains a few projects that provide examples from the
Barcode of Life project. Included here are:
- barcode.gbw
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This workspace contains two projects that describe the relationship
of cytochrome oxidase among several organisms. Total size: 336kb.
- collembola.gbp
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A sample of 54 cytochrome oxidase proteins gathered from a series of
Collembola species (springtails). The project contains both a
set of alignments and a reconstructed phylogenetic tree. Size: 31kb.
- aves.gbp
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A sample of 529 cytochrome oxidase samples (DNA sequences) gathered
from a series of birds. The project includes both a set of
alignments and a reconstructed phylogenetic tree. Size: 296kb.
- Streptococcus pyogenes
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Presented here is a sample alignment between two Streptococcus
pyogenes variants.
- streptococcus.gbw
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This workspace contains one project that shows the relationship of
two bacterial genomes, both serotyped as Streptococcus
pyogenes strains. The alignments are notable for two large
inversions. Size: 272kb.
- NC_004606_NC_006086.gbp
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This project includes an alignment of Streptococcus pyogenes
(serotype M3) ( NC_004606 ) to Streptococcus pyogenes
strain MGAS10394 ( NC_006086 ). Size: 272kb.
- Human-Mouse Chromosome Alignments
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Presented here is a sample alignment between human chromosome 17 and
mouse chromosome 11.
- mouse-human.gbw
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This workspace contains two projects showing alignments of human
chromosome 17 to mouse chromosome 11. These alignments are
presented in the context of two different levels of refinement: raw
BLAST hits, and a refined set of hits describing the non-redundant
set of matches between the two chromosomes. Size: 26MB.
- raw.asn.gbp
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This project includes an alignment of human chromosome 17 ( NC_000017 ) to mouse chromosome 11 ( NC_000077 ). Size: 16MB.
- 1.asn.gbp
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This project includes an alignment of human chromosome 17 ( NC_000017 ) to mouse chromosome 11 ( NC_000077 ). This subset was refined using a
series of steps to determine reciprocal best hits, eliminate
redundant segments, and extend segments where possible. Size:
10MB.