RELEASE: NCBI dbSNP Build 123
dbSNP Component Availability Dates:
| Component | Date available |
|---|
|
| dbSNP web query for build 123: | Oct 30, 2004 | | ftp data for build 123: | Nov 03, 2004 | | Entrez Indexing for build 123: | Nov 08, 2004 | | BLAST database for build 123: | Nov 04, 2004 |
- The complete data for
build 123 are available at ftp://ftp.ncbi.nih.gov/snp/
in multiple formats.
- All formats and conventions are described in ftp://ftp.ncbi.nih.gov/snp/00readme.txt.
- Please address any questions or comments regarding the data to snp-admin@ncbi.nlm.nih.gov.
New Submission since previous build:
| Organism | Current
Build | New Submissions
(ss#'s) | New RefSNP Clusters
(rs#'s) ( # validated) | New ss# with
Genotype | New ss# with
Frequency |
|---|
| Homo sapiens | 123 | 1,612,590 | 515,325 (391,839) | 1,587,225 | 135,963 | | Mus musculus | 123 | | 39,565 (39,522) | | | | Arabidopsis thaliana | 130 | 2 | (0) | | | | Agelaius phoeniceus | 126 | 47 | (0) | | | | Total: 4 Organisms | | 1,612,641 | 554,890 (431,361) | 1,587,225 | 135,963 |
*Submissions received after reclustering of current build will appear as new rs# clusters in the next build.
BUILD STATISTICS:
| Organism | dbSNP
Build | Genome
Build | Number of
Submissions
(ss#'s) | Number of
RefSNP Clusters
(rs#'s) ( # validated) | Number of
(rs#'s)
in gene | Number of
(ss#'s)
with
genotype | Number of
(ss#'s)
with
frequency |
|---|
| Homo sapiens | 123 | 35.1 | 21,564,104 | 10,079,771 (5,007,794) | 4,007,305 | 1,822,844 | 1,045,322 | | Gallus gallus | 123 | 1.1 | 3,641,959 | 3,291,672 (3,281,479) | 1,627,671 | 3,624,831 | | | Mus musculus | 123 | 33.0 | 596,476 | 581,577 (535,131) | 279,272 | 544,636 | | | Anopheles gambiae | 128 | 2.2 | 1,368,805 | 1,136,268 (0) | | | | | Canis familiaris | 126 | 2.1 | 975,417 | 975,400 (0) | | | 17 | | Rattus norvegicus | 123 | 2.0 | 45,360 | 43,229 (702) | 22,965 | 669 | | | Saccharum hybrid cultivar | 126 | | 42,853 | 42,853 (0) | | | | | Danio rerio | 130 | 3.1 | 2,031 | 2,025 (1,903) | | 2,031 | | | Sus scrofa | 128 | 1.1 | 5,450 | 1,521 (24) | | | | | Bos indicus x Bos taurus | 128 | 3.1 | 2,425 | (0) | | | | | Bos taurus | 130 | 4.1 | 2,058 | 32 (29) | | | 54 | | Caenorhabditis elegans | 128 | 7.1 | 1,065 | 1,065 (0) | | | | | Arabidopsis thaliana | 130 | 7.1 | 186 | 184 (184) | | 184 | | | Cooperia oncophora | 126 | | 426 | 426 (96) | | | 425 | | Ovis aries | 128 | | 681 | 614 (66) | | | | | Glycine max | 127 | | 281 | 278 (3) | | 281 | | | Plasmodium falciparum | 127 | | 203 | 203 (0) | | 199 | | | Zea mays | 128 | | 148 | 146 (80) | | 90 | | | Pinus pinaster | 126 | | 132 | 32 (0) | | | | | Ficedula albicollis | 126 | | 37 | 37 (0) | | | 37 | | Agelaius phoeniceus | 126 | | 47 | (0) | | | | | Ficedula hypoleuca | 126 | | 28 | 20 (0) | | | 28 | | Salmo salar | 128 | | 17 | (0) | | | 10 | | Hydroides elegans | 126 | | 8 | 7 (1) | | | | | Schistosoma mansoni | 127 | | 8 | (0) | | | 2 | | Pan troglodytes | 127 | 2.1 | 2 | 2 (0) | | | 2 | | Total: 26 Organisms | | 4
genomes | 28,252,424 | 16,159,571 (8,829,579) | 5,937,213 | 5,997,980 | 1,045,897 |
See summary for past builds:
|
