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Submitted SNP(ss) Details: ss18627820           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR9-12_NA17119-200402.chr10.NT_030059.11_15270183
RefSNP(rs#)rs12248560
Submitted Batch IDSC-CHR9-12_NA17119-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR9-12_NA17119
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS9AA_12-953f24.p1ka 523 56S9AA_12-1008l11.q1k 160 40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18627820|allelePos=201|len=555|taxid=9606|alleles='C/T'|mol=Genomic
 TTATTTTTTC TCATGAGCAT CTCTGGGGCT GTTTTCCTTA GATAAATAAG TGGTTCTATT
 TAATGTGAAG CCTGTTTTAT GAACAGGATG AATGTGGTAT ATATTCAGAA TAACTAATGT
 TTGGAAGTTG TTTTGTTTTG CTAAAACAAA GTTTTAGCAA ACGATTTTTT TTTTCAAATT
 TGTGTCTTCT GTTCTCAAAG
 Y
 ATCTCTGATG TAAGAGATAA TGCGCCACGA TGggcatcag aagacctcag ctcaaatccc
 agttctgcca gctatgagct gtgtggcacc aacaggtgtc ctgttctccc agggtctccc
 ttttcccatt tgaaatataa aaaataacaa ttcctgcctt cacgtgtttt tttagggggt
 taaatgGTAA AGGTGTTTAT ATCTGCTAAG GTAATTTACT TGATATATGT TTGGTTATTG
 AAGATATATG AGTTATGTTA GCTATTTCAT GTTTAGGCTG CTGTATTTTT AGTAGGCTAT
 ATTAAATAGA GGATTTCATT ATAAAGGACA AAGTCTCCTA ATCTTCGATA TAGG

  Submitted Frequency for ss18627820 back to top
There is no frequency submission for ss18627820.


  dbSNP summary of Genotypes for ss18627820 back to top
No sufficient data to compute Hardy-weinberg probability for ss18627820.


  Submitted individual genotype for ss18627820 back to top
There is no individual genotype data for ss18627820.

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