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Submitted SNP(ss) Details: ss342253873           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr8-20054928
RefSNP(rs#)rs116941637
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize2570
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342253873|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 CTTCCCTTCC CTCTGCGCCC GCGCGCGCCT CCCAGCACGC TGGTCAGCTC CTCTTGCTCG
 CAAGCAGGTC TGGCCCCAGC GGCGCGAAGT CACGAGGCTG GGGGCGGCCG GCGGCGAAGG
 GGGCGGGGCG AGGCCGGGGC GCCGCAGCGC GCATAGGCGG AGCCTCGGGC CGCGGGCCGC
 CTTGGTATAT CTGCGCGTGC GCGGCGTCGC TGCTGGGCCA GTCGGGACAG AGGAGACAAG
 ATGGCGCTGC
 R
 GGCGATGCGG GGGATTGTCA ACGGGGCCGC ACCCGAGCTA CCCGTGCCCA CCGGTGGGCC
 GGCGGTGGGA GCTCGGGAGC AGGCGCTGGC AGTCAGTCGG AACTACCTCT CCCAGCCTCG
 CCTCAGTGAG TATCAGAGAG TAATACGTCT CCGGTCTTTG CTCCCTAGCC TAGCCCTTTG
 CTCCCAGTCA CCTGCTTAGC CAGCGGGTAG GGGGTAGGAT TTGTTTTTCC CTCCCGCGTC
 TCCCCTCCGA

  Submitted Frequency for ss342253873 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		12938G/G=0.98871499
A/G=0.01128500
A/A=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342253873 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		25702570G=0.99182880
A=0.00817121G/G=0.98365760
A/G=0.01634241
A/A=0.00000000
Pr(chiSq=0.087,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss342253873 back to top
There is no individual genotype data for ss342253873.

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