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Submitted SNP(ss) Details: ss7989425           
Submitter
HandleEGP_SNPS
Submitter SNP IDBNIP1-001967
RefSNP(rs#)rs255305
Submitted Batch IDBNIP1-PDR90-040803
Submitted DateApr 14, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPApr 14 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize156
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss7989425|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GTAGACACGG TTCCATGAGT TCAGCAAAAA GAAACCGAGT TTTAAACCTT Gtttttgctt
 gtttgttttt gtttttttga gacggagtct cgctctgtcg cccaggctgg agtgcagtgg
 cgcgatctcg actcgcggca agctccgcct cccgggttcc cgccattctc ctgcctcagc
 ctcctgagta gctgggacta caggcacccg ccaccacgcc cggctaattt ttgtgttttg
 cttagtagag acggg
 R
 tttcaccgtg ttagccagga tggtctcgat ctcctgacct cgtgatccgc ccgcctcggc
 ctcccaaatt gctgggatta caggcgtgag ccaccgcgcc cggccTAAAC CTTGGTTTTT
 AAAAATAATC ATTTTCAACA AAGTCACTAA ACATTAGATG TAGACTCAGA GTTTGTAACA
 AGGTGTGGCA AAAAGTGCAG GAAAATAGGG CTCCCCAGAT AAACCAGATG CAGAATAAAC
 CAAATTAGAT GCAGA

  Submitted Frequency for ss7989425 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90156G=0.76923102
A=0.23076899
0.355 +/-0.051BNIP1-PDR90-040803EGP_SNPS


  dbSNP summary of Genotypes for ss7989425 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90156156G=0.76923078
A=0.23076923G/G=0.61538464
A/G=0.30769232
A/A=0.07692308
Pr(chiSq=1.387,df=1)
=0.251		Genotype
Freq.

  Submitted individual genotype for ss7989425 back to top
There is no individual genotype data for ss7989425.

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