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Submitted SNP(ss) Details: ss60197783           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDPRKACB-040590
RefSNP(rs#)rs589373
Submitted Batch IDPRKACB-PGA_CEPH-061906
Submitted DateJun 19, 2006
Publication Cited[1] SeattleSNPs - Program for Genomic Applications (PGA)-(HL66682)
First entry to dbSNPJun 19 2006 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPGA_CEPH-PANEL
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss60197783|allelePos=256|len=511|taxid=9606|alleles='A/T'|mol=Genomic
 AACAACTATT TACATAGCAT TTACAATATA TCAGGTATTA TAAGTAATCT AGAGATGATT
 TAAAGTATAT GGACAGTGTG TATAGGCTTT ATGCAAAGCC TCTGTCATTT TATATAAGGG
 ACTTGAGCAC CTGGGCATTT TGGTTTCTGC TGTAGGTCCT GGAACCAACC CCCAGGGATA
 CTGATGGACA ACTATAATTT ATTGTGACAA TTATGGACTA ATTTGTTTTG TAACTATTAC
 AGAAGTTAAA ATGTG
 W
 ACAGTAGTGA TCCAACCACT TCATGTTACA AATTTTGAAA ACCTGAGGCC CAAAGATTTG
 AAATCATCTC AAGTCAGAAA GTTAGTTAAA TAAAAGGCCT AGATTAAAAC ACAAATCTGA
 CTCCTACTCA ATTTATTTGC TCAATATTAT CAGTATACTC CTAATTTTAT ATATTAATAC
 CTGGCTGGTA TCTTTAATTA CTTTTGTTAT TTATATTTAA CTTCTTGACT TCTGTGACTA
 TCCTCACATT GACCA

  Submitted Frequency for ss60197783 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA_YORUB-PANEL44T=0.75000000
A=0.25000000
PRKACB-PGA_YORUB-061906PGA-UW-FHCRC
PGA_CEPH-PANEL46T=0.95652199
A=0.04347800
PRKACB-PGA_CEPH-061906PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss60197783 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA_CEPH-PANEL4646T=0.95652175
A=0.04347826T/T=0.91304350
A/T=0.08695652
Pr(chiSq=0.004,df=1)
=1.000		Genotype
Freq.
PGA_YORUB-PANEL4444T=0.75000000
A=0.25000000T/T=0.54545456
A/T=0.40909091
A/A=0.04545455
Pr(chiSq=0.182,df=1)
=0.752		Genotype
Freq.

  Submitted individual genotype for ss60197783 back to top
There is no individual genotype data for ss60197783.

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