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Submitted SNP(ss) Details: ss5605666           
Submitter
HandleEGP_SNPS
Submitter SNP IDTFDP1-016147
RefSNP(rs#)rs4150712
Submitted Batch IDTFDP1-PDR90-101602
Submitted DateDec 03, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 3 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize174
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5605666|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CAGGACACAG GTCGGATAAG CCTGGTTTAT ACTCTAGTGG GGAGCTGTTA GCAATGGAAA
 TGGTCAGTTG TTCAGTAGAT TAGAAAGTGC AGAGAAGAGC AGGGCAGAGA AGGGTGAGAC
 AGCGTGGGGT CCAGGTGTAT GCCCCACCTG GCTGCTGTGT GTTGCTTGCT GACCCCCTCA
 TGGGCCTTCG AGTGTAAGGG AGAGTCCTCT TCATGCCCTC GCACCCTCCT GGGTCTCTAG
 GGCTTGTGTG TCCCC
 R
 GGGGAGGAGC CCCCTGGACA CACCCTGGCG GGTGCTGGCT GGCAAAGAGG GAGGCGTTGA
 GGGCCCGGGC AGCGCCTCCA TCCTGGCCAG GCAAGTGCAG CTTCAGGTTG TGAGAACCGT
 GGTCACCTGT GTGTTTTAAA GATGACGGCA GTGATAGGTC CCCTTTTGGG CCTGGCATGG
 AAATTAGTCA CATTCGTAGA CCCTGTCACA GAGTGGGCAC TGGTGATGTC ATCTTTTATA
 GTTCTTATTT TCAAT

  Submitted Frequency for ss5605666 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90174A=0.52873600
G=0.47126400
0.498 +/-0.006TFDP1-PDR90-101602EGP_SNPS


  dbSNP summary of Genotypes for ss5605666 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90174174A=0.52873564
G=0.47126436A/G=0.43678162
A/A=0.31034482
G/G=0.25287357
Pr(chiSq=1.328,df=1)
=0.251
Genotype
Freq.

  Submitted individual genotype for ss5605666 back to top
There is no individual genotype data for ss5605666.

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