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Submitted SNP(ss) Details: ss35035903           
Submitter
HandleEGP_SNPS
Submitter SNP IDCCRK-003571
RefSNP(rs#)rs28364946
Submitted Batch IDCCRK-PDR90-020805
Submitted DateFeb 09, 2005
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize168
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35035903|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TGTGCTGGCG TTAGGGCCTT GCACTTGCTT TTCTTCCTGC TCAGAGCTTT ATCCCAGATC
 CCCACAAACT GGGTCCTCAT CTAGCCCCAC CCCACCTAAA TAAAGAAGTA TCCTTTTCTC
 CACTCACAGA ATCACACTAT CCTCTTCTAG TTCTGTTGAT TTTTTTTCTT TTTTTGATAC
 AGGGTCTCAC TCTGTCACCC AGGCTGGAGT GTAGAAGTGC GATTTTGTCT CCCTGTAGTC
 TCAACCTCCT GGGCT
 Y
 AGGTGATCCT CCCACCTCAG CTTCCCAAGT AGCTAGGACT ACAGGCACGT GTCACCATGC
 CTGGCTAGTT TTTTGTATTT TTTGTAGAGA CAAGGTTTCA CCATGTTGCC CAGGCTGGTC
 TCAAACACCT GGGTTCAAGC CATCCGCCCA CCTTGGCCTC TCAAAGTACT GGGATTACGG
 GCATGAGACG TCATGCCCAG CCCCCTTGTA TTTTGGTTCC TGTACTTACA GAATCTGAAT
 ATATCCCTTT TATTC

  Submitted Frequency for ss35035903 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90168C=0.96428603
T=0.03571400
CCRK-PDR90-020805EGP_SNPS


  dbSNP summary of Genotypes for ss35035903 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90168168C=0.96428573
T=0.03571429C/C=0.94047618
C/T=0.04761905
T/T=0.01190476
Pr(chiSq=8.002,df=1)
=0.005
Genotype
Freq.

  Submitted individual genotype for ss35035903 back to top
There is no individual genotype data for ss35035903.

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