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Submitted SNP(ss) Details: ss32478978           
Submitter
HandleEGP_SNPS
Submitter SNP IDCAPN9-001577
RefSNP(rs#)rs3893225
Submitted Batch IDCAPN9-PDR90-010505
Submitted DateJan 06, 2005
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJan 6 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32478978|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 GCCTTTACAG AAAAGGTTTG CTGACCCCAG TGCTGAATCA CTATGGGATT GCCTGTGCAG
 GAGCTGTGCC AGCTGTGTTC ACATAATGCA TCCTGCTTTC ATTCACCAAG CTCCCTTCCG
 ACTACAAAAC TCTGCCATTC TCTGATGCAG GAGATGGGAC TCAAGGCCAC ACCGTGCACT
 TCTCCGTAAA GCCACCTCCT GGACCAGTTG GGTTTCTTGC TCCTTTTCCT TCTGAAGCAA
 TCCTCTCTCT CCCAT
 K
 AGGCCCCCTG AGCGCACTAA GCAGAGGTGC CGCCTCTTGA GTGGAATGTG CCAGGCCCCA
 GAGCTGCCTC TGAGTCTGCA GGAGTGCAGA GTGGGCAGAG GGCTCTCTCT GCTGTTTTCC
 ATCAGGGCGT GTCCCATCTC AGTCTAACAG GGAGGTGCCC AGAAAATAGG TGGAGGTGAG
 GGCCACTCAG CCCAGTGGCC CTCTGAGCTG TTCCTTCTTG ACCGGCACAC ACAGCTCGCT
 TCTTCACTTT CTTTT

  Submitted Frequency for ss32478978 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90178T=0.62921399
G=0.37078699
CAPN9-PDR90-010505EGP_SNPS


  dbSNP summary of Genotypes for ss32478978 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90178178T=0.62921351
G=0.37078652G/T=0.49438202
T/T=0.38202247
G/G=0.12359551
Pr(chiSq=0.315,df=1)
=0.584		Genotype
Freq.

  Submitted individual genotype for ss32478978 back to top
There is no individual genotype data for ss32478978.

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