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Submitted SNP(ss) Details: ss32478958           
Submitter
HandleEGP_SNPS
Submitter SNP IDCAPN9-000507
RefSNP(rs#)rs28359571
Submitted Batch IDCAPN9-PDR90-010505
Submitted DateJan 06, 2005
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJan 6 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32478958|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 AGACAGAACG TGTGTCAGAC TGAGTGCACA CTCCTGGGAA CTGTGAGCTT ATATAAAAAT
 TCACATCATG GCCTTTTAAC TGTACCCATT AACTCAAGAC CCCTTGTCTC CAAACCTCAA
 CTTTGACTAG TTAGAGAATC ACACAGAAAT CATTATAAAG TGCTTAGAAC ATCAGAGTTT
 TCACGTGGTG ACTAATACTT TTATTGACTT ATTTTTATTG ATACATAATA TTTGTACGTA
 TTGATGGGGT ACATG
 Y
 GCTATTTTGT TACATGTGCA GAATGTGTGA TATCGAGTTG GGGTATTTAG GCTATCTATC
 CCCTCCAGTA TTTATCATTT CTTTTCTTCT TTCCTTCTCT CTCTCTCTTT TCTTTCTCTC
 TCTCTCTCTT TTTTCTTTTT TTTTTTTTTT TTTTTTTGAC AGAGTCTCTC TCTGTCACCC
 AGGCTAGAGG GCAGTGGCAC GACCTCAGTT CACTGCAACC TCCACCTCCC AGGTTCAAGG
 GATTCTCCTG CCTCA

  Submitted Frequency for ss32478958 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90180T=0.99444401
C=0.00555600
CAPN9-PDR90-010505EGP_SNPS


  dbSNP summary of Genotypes for ss32478958 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90180180T=0.99444443
C=0.00555556T/T=0.98888886
C/T=0.01111111
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss32478958 back to top
There is no individual genotype data for ss32478958.

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