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Submitted SNP(ss) Details: ss16361260           
Submitter
HandleEGP_SNPS
Submitter SNP IDDDC-000737
RefSNP(rs#)rs3829897
Submitted Batch IDDDC-PDR90-012704
Submitted DateFeb 09, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize144
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16361260|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 TCCACGTGGC TGCTGCCTGC AGGTCCCTGC ACGGCTGCTG GAGGGAGCTG CTTATGCACA
 GGCTGAGACC AGGATCCCCT CACTTGTACC ACCTGCCAGG TCCCCGCCCT GCAGCCCCTG
 CACTCATGGC ATGTTCTGCT GCCTGGAAGG CCGCTGCCTC TGTCCCAGTT CCATGGGGAT
 CTCTGCTCTA GAGGGGTAGC TTCTTCCTTG AAAAGATGCT GCTTAAAGTC AGAGGATGGA
 TGGCTCTCCT TGGGG
 M
 ATTTCTAGCT CTGGACTGTG CCACAAGCCC TGGATGTGGT ATGTGTATGT GTGTGTATGC
 ATGCACTTAG GTATGTGTGT GTGTGCATGT GTGTGTGGTA TGCATGCATA TATGCATGTG
 CTATTGTACG TGTGTAGTGT GTATAAACAT GCATGCATGT ATGCTTGTGT ATGTGTGTGC
 ATGCATAAGT GTGCATGGTG TGTGTGCATG TGTGTGTGGT CGGGGCAGGG GCACCTGCAG
 GCTGCTCGTC ATCTG

  Submitted Frequency for ss16361260 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90144C=0.53472197
A=0.46527800
0.498 +/-0.008DDC-PDR90-012704EGP_SNPS


  dbSNP summary of Genotypes for ss16361260 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90144144C=0.53472221
A=0.46527779A/C=0.48611110
C/C=0.29166666
A/A=0.22222222
Pr(chiSq=0.038,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss16361260 back to top
There is no individual genotype data for ss16361260.

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