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Submitted SNP(ss) Details: ss12583982           
Submitter
HandleEGP_SNPS
Submitter SNP IDDIA1-003165
RefSNP(rs#)rs8190387
Submitted Batch IDDIA1-PDR90-071503
Submitted DateJul 23, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJul 23 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize174
PopulationPDR90
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12583982|allelePos=256|len=511|taxid=9606|alleles='A/T'|mol=Genomic
 CTCCCAGCCC GGCTGTGAGT GCTCAGCGAC CCTGACAGGC TGACAGGTAC AGTCTGCCGG
 GCTTTCCTAC TGTCCCTGGC AGCCCCATGC TTACTCTGCG GCCCAGATCC CAGCTCTGTG
 TCCACCTGTT CCTTCTCCTG GGTTCCCTTC CCCCACAGTT CCCAGCCAAG CCAGAGCCCC
 CCACTGCAGA ACTTCCTCCA CTCCCTCCCA CTTCCTCCCG GTTAGAACAG GACCAGGAGG
 GAGGTGCCGC TCAGA
 W
 TCTGGCAGGA CCGCTGGCGG GCAGGCAGGG GACAGGTAAG CAAGTCACCC GACTGGCTTG
 TCTAAGCTCC AGGGCAGGGA GCTGGCACCT GGGGAGGACC GGGCCTGCCA GGTCGGGGGC
 CCTGGCAGCT CTCTCTGCCC ACCCCTAACC TGGCCTGGGC AGAGTGGAGG CCAGGGTCCC
 AGTGGGGAAT TCCAGGGGTG GGCAGCTGCG CAGGGCATTC TATGTGTGGG GAGCAGAGCT
 ACGCAGCCCC TCAGC

  Submitted Frequency for ss12583982 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90174T=0.98850602
A=0.01149400
0.023 +/-0.022DIA1-PDR90-071503EGP_SNPS


  dbSNP summary of Genotypes for ss12583982 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90174174T=0.98850572
A=0.01149425T/T=0.97701150
A/T=0.02298851
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss12583982 back to top
There is no individual genotype data for ss12583982.

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