NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss12583797           
Submitter
HandleEGP_SNPS
Submitter SNP IDBID-000823
RefSNP(rs#)rs8190256
Submitted Batch IDBID-PDR90-071503
Submitted DateJul 23, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJul 23 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize170
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12583797|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 GATGACCTGG CCTCAGTCCA TGAAGTTTCC CTTTCGTCTT CTGCAGGGCA CCGGCCCCTA
 ATGCCATCTG ACGGTTTCCC TGCTCACAGG ATCTTCCATT TGTTAGCCCC CCAGAGTGCC
 CAGCCCGAGT GAAGAGCATG CAGGAAACaa gcccctgtcc tcgtggaggc tacattccga
 gaggggaggt aggcaacaca cacacaaacg actccgtagt atgtcatgct gcgatgctgg
 ctgtggagga aaatg
 M
 agtgaggCCT GGTGAAAGCC AGAGGCCATG GGGCTgccga ggaggaacag ggacagggta
 ggatttgctt agagcagggc aggtcgcgtg ggactctgcg ggccactgaa aggaacttgg
 cttttattca gagGATGTTA AAGCGTGAGT GACATCCTCT GACCTTTTAT AAAAGAGGCA
 AGAGTCTAGG GAGCCCGGGT AGAAGTGAGG GCGTCTGGAG GAGCCACAGT GGGCTCAGGG
 AGTGAGCCCA CGCGA

  Submitted Frequency for ss12583797 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90170A=0.94117600
C=0.05882400
0.111 +/-0.045BID-PDR90-071503EGP_SNPS


  dbSNP summary of Genotypes for ss12583797 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90170170A=0.94117647
C=0.05882353A/A=0.88235295
A/C=0.11764706
Pr(chiSq=0.038,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss12583797 back to top
There is no individual genotype data for ss12583797.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement