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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs9275582

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr6:32712293 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
C>T
Variation Type
SNV Single Nucleotide Variation
Frequency
T=0.227168 (60129/264690, TOPMED)
T=0.228226 (31921/139866, GnomAD)
T=0.217513 (24408/112214, ALFA) (+ 16 more)
T=0.23870 (18783/78688, PAGE_STUDY)
T=0.23862 (6743/28258, 14KJPN)
T=0.24111 (4041/16760, 8.3KJPN)
T=0.2200 (1409/6404, 1000G_30x)
T=0.2214 (1109/5008, 1000G)
T=0.2020 (905/4480, Estonian)
T=0.2758 (808/2930, KOREAN)
T=0.2159 (450/2084, HGDP_Stanford)
T=0.2105 (397/1886, HapMap)
T=0.217 (217/998, GoNL)
T=0.247 (148/600, NorthernSweden)
T=0.185 (40/216, Qatari)
T=0.126 (27/214, Vietnamese)
C=0.433 (84/194, SGDP_PRJ)
T=0.33 (10/30, Ancient Sardinia)
C=0.42 (10/24, Siberian)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
None
Publications
1 citation
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541
Population Group Sample Size Ref Allele Alt Allele
Total Global 112214 C=0.782487 T=0.217513
European Sub 97702 C=0.78398 T=0.21602
African Sub 3988 C=0.8019 T=0.1981
African Others Sub 152 C=0.763 T=0.237
African American Sub 3836 C=0.8034 T=0.1966
Asian Sub 450 C=0.773 T=0.227
East Asian Sub 382 C=0.767 T=0.233
Other Asian Sub 68 C=0.81 T=0.19
Latin American 1 Sub 310 C=0.790 T=0.210
Latin American 2 Sub 1470 C=0.6993 T=0.3007
South Asian Sub 170 C=0.818 T=0.182
Other Sub 8124 C=0.7696 T=0.2304


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 C=0.772832 T=0.227168
gnomAD - Genomes Global Study-wide 139866 C=0.771774 T=0.228226
gnomAD - Genomes European Sub 75782 C=0.76717 T=0.23283
gnomAD - Genomes African Sub 41866 C=0.80839 T=0.19161
gnomAD - Genomes American Sub 13624 C=0.70163 T=0.29837
gnomAD - Genomes Ashkenazi Jewish Sub 3322 C=0.6981 T=0.3019
gnomAD - Genomes East Asian Sub 3130 C=0.7802 T=0.2198
gnomAD - Genomes Other Sub 2142 C=0.7670 T=0.2330
Allele Frequency Aggregator Total Global 112214 C=0.782487 T=0.217513
Allele Frequency Aggregator European Sub 97702 C=0.78398 T=0.21602
Allele Frequency Aggregator Other Sub 8124 C=0.7696 T=0.2304
Allele Frequency Aggregator African Sub 3988 C=0.8019 T=0.1981
Allele Frequency Aggregator Latin American 2 Sub 1470 C=0.6993 T=0.3007
Allele Frequency Aggregator Asian Sub 450 C=0.773 T=0.227
Allele Frequency Aggregator Latin American 1 Sub 310 C=0.790 T=0.210
Allele Frequency Aggregator South Asian Sub 170 C=0.818 T=0.182
The PAGE Study Global Study-wide 78688 C=0.76130 T=0.23870
The PAGE Study AfricanAmerican Sub 32510 C=0.81037 T=0.18963
The PAGE Study Mexican Sub 10810 C=0.65957 T=0.34043
The PAGE Study Asian Sub 8318 C=0.7665 T=0.2335
The PAGE Study PuertoRican Sub 7912 C=0.7329 T=0.2671
The PAGE Study NativeHawaiian Sub 4534 C=0.7880 T=0.2120
The PAGE Study Cuban Sub 4230 C=0.7522 T=0.2478
The PAGE Study Dominican Sub 3828 C=0.7719 T=0.2281
The PAGE Study CentralAmerican Sub 2450 C=0.6245 T=0.3755
The PAGE Study SouthAmerican Sub 1980 C=0.6793 T=0.3207
The PAGE Study NativeAmerican Sub 1260 C=0.7603 T=0.2397
The PAGE Study SouthAsian Sub 856 C=0.832 T=0.168
14KJPN JAPANESE Study-wide 28258 C=0.76138 T=0.23862
8.3KJPN JAPANESE Study-wide 16760 C=0.75889 T=0.24111
1000Genomes_30x Global Study-wide 6404 C=0.7800 T=0.2200
1000Genomes_30x African Sub 1786 C=0.7990 T=0.2010
1000Genomes_30x Europe Sub 1266 C=0.7575 T=0.2425
1000Genomes_30x South Asian Sub 1202 C=0.8336 T=0.1664
1000Genomes_30x East Asian Sub 1170 C=0.7838 T=0.2162
1000Genomes_30x American Sub 980 C=0.704 T=0.296
1000Genomes Global Study-wide 5008 C=0.7786 T=0.2214
1000Genomes African Sub 1322 C=0.7920 T=0.2080
1000Genomes East Asian Sub 1008 C=0.7837 T=0.2163
1000Genomes Europe Sub 1006 C=0.7594 T=0.2406
1000Genomes South Asian Sub 978 C=0.833 T=0.167
1000Genomes American Sub 694 C=0.696 T=0.304
Genetic variation in the Estonian population Estonian Study-wide 4480 C=0.7980 T=0.2020
KOREAN population from KRGDB KOREAN Study-wide 2930 C=0.7242 T=0.2758
HGDP-CEPH-db Supplement 1 Global Study-wide 2084 C=0.7841 T=0.2159
HGDP-CEPH-db Supplement 1 Est_Asia Sub 470 C=0.785 T=0.215
HGDP-CEPH-db Supplement 1 Central_South_Asia Sub 414 C=0.792 T=0.208
HGDP-CEPH-db Supplement 1 Middle_Est Sub 350 C=0.837 T=0.163
HGDP-CEPH-db Supplement 1 Europe Sub 320 C=0.787 T=0.212
HGDP-CEPH-db Supplement 1 Africa Sub 242 C=0.839 T=0.161
HGDP-CEPH-db Supplement 1 America Sub 216 C=0.542 T=0.458
HGDP-CEPH-db Supplement 1 Oceania Sub 72 C=1.00 T=0.00
HapMap Global Study-wide 1886 C=0.7895 T=0.2105
HapMap American Sub 768 C=0.760 T=0.240
HapMap African Sub 688 C=0.807 T=0.193
HapMap Asian Sub 254 C=0.772 T=0.228
HapMap Europe Sub 176 C=0.875 T=0.125
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 C=0.783 T=0.217
Northern Sweden ACPOP Study-wide 600 C=0.753 T=0.247
Qatari Global Study-wide 216 C=0.815 T=0.185
A Vietnamese Genetic Variation Database Global Study-wide 214 C=0.874 T=0.126
SGDP_PRJ Global Study-wide 194 C=0.433 T=0.567
Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 30 C=0.67 T=0.33
Siberian Global Study-wide 24 C=0.42 T=0.58
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 6 NC_000006.12:g.32712293C>T
GRCh37.p13 chr 6 NC_000006.11:g.32680070C>T
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_COX_CTG1 NT_113891.3:g.4125579C>T
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_COX_CTG1 NT_113891.2:g.4125685C>T
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_QBL_CTG1 NT_167248.2:g.3906543C>T
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_QBL_CTG1 NT_167248.1:g.3912139C>T
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_DBB_CTG1 NT_167245.2:g.3956389C>T
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_DBB_CTG1 NT_167245.1:g.3961974C>T
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1 NT_167249.2:g.4112413T>C
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1 NT_167249.1:g.4111711T>C
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_MANN_CTG1 NT_167246.2:g.4131590C>T
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MANN_CTG1 NT_167246.1:g.4137210C>T
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_MCF_CTG1 NT_167247.2:g.4011027C>T
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MCF_CTG1 NT_167247.1:g.4016612C>T
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement C= T
GRCh38.p14 chr 6 NC_000006.12:g.32712293= NC_000006.12:g.32712293C>T
GRCh37.p13 chr 6 NC_000006.11:g.32680070= NC_000006.11:g.32680070C>T
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_COX_CTG1 NT_113891.3:g.4125579= NT_113891.3:g.4125579C>T
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_COX_CTG1 NT_113891.2:g.4125685= NT_113891.2:g.4125685C>T
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_QBL_CTG1 NT_167248.2:g.3906543= NT_167248.2:g.3906543C>T
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_QBL_CTG1 NT_167248.1:g.3912139= NT_167248.1:g.3912139C>T
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_DBB_CTG1 NT_167245.2:g.3956389= NT_167245.2:g.3956389C>T
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_DBB_CTG1 NT_167245.1:g.3961974= NT_167245.1:g.3961974C>T
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1 NT_167249.2:g.4112413T>C NT_167249.2:g.4112413=
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_SSTO_CTG1 NT_167249.1:g.4111711T>C NT_167249.1:g.4111711=
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_MANN_CTG1 NT_167246.2:g.4131590= NT_167246.2:g.4131590C>T
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MANN_CTG1 NT_167246.1:g.4137210= NT_167246.1:g.4137210C>T
GRCh38.p14 chr 6 alt locus HSCHR6_MHC_MCF_CTG1 NT_167247.2:g.4011027= NT_167247.2:g.4011027C>T
GRCh37.p13 chr 6 alt locus HSCHR6_MHC_MCF_CTG1 NT_167247.1:g.4016612= NT_167247.1:g.4016612C>T
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

116 SubSNP, 19 Frequency submissions
No Submitter Submission ID Date (Build)
1 SI_MHC_SNP ss12700672 Oct 31, 2003 (118)
2 ABI ss42824142 Mar 14, 2006 (126)
3 ILLUMINA ss71595758 May 16, 2007 (127)
4 ILLUMINA ss74915453 Dec 06, 2007 (129)
5 ILLUMINA ss79290275 Dec 15, 2007 (130)
6 ILLUMINA ss98238798 May 25, 2008 (130)
7 HUMANGENOME_JCVI ss98383893 Feb 05, 2009 (130)
8 1000GENOMES ss109920591 Feb 13, 2009 (137)
9 ILLUMINA ss122955419 Dec 01, 2009 (135)
10 ILLUMINA ss154483020 Dec 01, 2009 (135)
11 ILLUMINA ss159657249 Dec 01, 2009 (135)
12 ILLUMINA ss160971026 Dec 01, 2009 (135)
13 COMPLETE_GENOMICS ss162216694 Jul 04, 2010 (132)
14 ILLUMINA ss172436928 Jul 04, 2010 (135)
15 ILLUMINA ss174790565 Jul 04, 2010 (135)
16 BUSHMAN ss201649457 Jul 04, 2010 (132)
17 BCM-HGSC-SUB ss207490339 Jul 04, 2010 (132)
18 1000GENOMES ss211818795 Jul 14, 2010 (137)
19 1000GENOMES ss222318537 Jul 14, 2010 (137)
20 1000GENOMES ss233415934 Jul 14, 2010 (137)
21 1000GENOMES ss240482889 Jul 15, 2010 (137)
22 GMI ss278741591 May 04, 2012 (137)
23 GMI ss285380883 Apr 25, 2013 (138)
24 ILLUMINA ss410956636 Sep 17, 2011 (137)
25 ILLUMINA ss481849174 May 04, 2012 (137)
26 ILLUMINA ss481881894 May 04, 2012 (137)
27 ILLUMINA ss482841750 Sep 08, 2015 (146)
28 ILLUMINA ss485719014 May 04, 2012 (137)
29 ILLUMINA ss537579744 Sep 08, 2015 (146)
30 TISHKOFF ss559120839 Apr 25, 2013 (138)
31 SSMP ss653052326 Apr 25, 2013 (138)
32 ILLUMINA ss778633652 Sep 08, 2015 (146)
33 ILLUMINA ss783305162 Sep 08, 2015 (146)
34 ILLUMINA ss784257365 Sep 08, 2015 (146)
35 ILLUMINA ss825620793 Jul 19, 2016 (147)
36 ILLUMINA ss832566550 Sep 08, 2015 (146)
37 ILLUMINA ss833168038 Jul 13, 2019 (153)
38 ILLUMINA ss834091297 Sep 08, 2015 (146)
39 EVA-GONL ss982786361 Aug 21, 2014 (142)
40 JMKIDD_LAB ss1073512774 Aug 21, 2014 (142)
41 1000GENOMES ss1319598162 Aug 21, 2014 (142)
42 EVA_DECODE ss1592320614 Apr 01, 2015 (144)
43 EVA_SVP ss1712852523 Apr 01, 2015 (144)
44 ILLUMINA ss1752631192 Sep 08, 2015 (146)
45 HAMMER_LAB ss1804367504 Sep 08, 2015 (146)
46 WEILL_CORNELL_DGM ss1926044133 Feb 12, 2016 (147)
47 ILLUMINA ss1958895065 Feb 12, 2016 (147)
48 GENOMED ss1970364258 Jul 19, 2016 (147)
49 JJLAB ss2023656921 Sep 14, 2016 (149)
50 ILLUMINA ss2094826279 Dec 20, 2016 (150)
51 ILLUMINA ss2095180120 Dec 20, 2016 (150)
52 USC_VALOUEV ss2151832657 Dec 20, 2016 (150)
53 HUMAN_LONGEVITY ss2282993233 Dec 20, 2016 (150)
54 SYSTEMSBIOZJU ss2626316263 Nov 08, 2017 (151)
55 ILLUMINA ss2634433551 Nov 08, 2017 (151)
56 GRF ss2707427465 Nov 08, 2017 (151)
57 SWEGEN ss2998841266 Nov 08, 2017 (151)
58 ILLUMINA ss3022605870 Nov 08, 2017 (151)
59 BIOINF_KMB_FNS_UNIBA ss3025619588 Nov 08, 2017 (151)
60 ILLUMINA ss3629511452 Oct 12, 2018 (152)
61 ILLUMINA ss3632351636 Oct 12, 2018 (152)
62 ILLUMINA ss3633416704 Oct 12, 2018 (152)
63 ILLUMINA ss3634139297 Oct 12, 2018 (152)
64 ILLUMINA ss3635059520 Oct 12, 2018 (152)
65 ILLUMINA ss3635820247 Oct 12, 2018 (152)
66 ILLUMINA ss3636781452 Oct 12, 2018 (152)
67 ILLUMINA ss3637573046 Oct 12, 2018 (152)
68 ILLUMINA ss3638621835 Oct 12, 2018 (152)
69 ILLUMINA ss3640766819 Oct 12, 2018 (152)
70 ILLUMINA ss3643563422 Oct 12, 2018 (152)
71 URBANLAB ss3648321948 Oct 12, 2018 (152)
72 ILLUMINA ss3653119748 Oct 12, 2018 (152)
73 EGCUT_WGS ss3666728856 Jul 13, 2019 (153)
74 EVA_DECODE ss3716939479 Jul 13, 2019 (153)
75 ILLUMINA ss3726333723 Jul 13, 2019 (153)
76 ACPOP ss3733381846 Jul 13, 2019 (153)
77 ILLUMINA ss3744551958 Jul 13, 2019 (153)
78 ILLUMINA ss3745359477 Jul 13, 2019 (153)
79 EVA ss3764846632 Jul 13, 2019 (153)
80 PAGE_CC ss3771282348 Jul 13, 2019 (153)
81 ILLUMINA ss3772853151 Jul 13, 2019 (153)
82 PACBIO ss3785437403 Jul 13, 2019 (153)
83 PACBIO ss3790794558 Jul 13, 2019 (153)
84 PACBIO ss3795673134 Jul 13, 2019 (153)
85 KHV_HUMAN_GENOMES ss3808002842 Jul 13, 2019 (153)
86 EVA ss3829850644 Apr 26, 2020 (154)
87 EVA ss3838402871 Apr 26, 2020 (154)
88 EVA ss3843846833 Apr 26, 2020 (154)
89 HGDP ss3847829613 Apr 26, 2020 (154)
90 SGDP_PRJ ss3864302489 Apr 26, 2020 (154)
91 KRGDB ss3911080487 Apr 26, 2020 (154)
92 EVA ss3985214590 Apr 26, 2021 (155)
93 EVA ss4017267854 Apr 26, 2021 (155)
94 VINODS ss4025195602 Apr 26, 2021 (155)
95 VINODS ss4025252242 Apr 26, 2021 (155)
96 VINODS ss4025294502 Apr 26, 2021 (155)
97 TOPMED ss4698586820 Apr 26, 2021 (155)
98 TOMMO_GENOMICS ss5176911525 Apr 26, 2021 (155)
99 EVA ss5237395643 Apr 26, 2021 (155)
100 1000G_HIGH_COVERAGE ss5267973338 Oct 13, 2022 (156)
101 EVA ss5315144668 Oct 13, 2022 (156)
102 EVA ss5364778921 Oct 13, 2022 (156)
103 HUGCELL_USP ss5465694756 Oct 13, 2022 (156)
104 EVA ss5508437902 Oct 13, 2022 (156)
105 1000G_HIGH_COVERAGE ss5553648623 Oct 13, 2022 (156)
106 SANFORD_IMAGENETICS ss5624625304 Oct 13, 2022 (156)
107 SANFORD_IMAGENETICS ss5640131110 Oct 13, 2022 (156)
108 TOMMO_GENOMICS ss5714781785 Oct 13, 2022 (156)
109 EVA ss5799684637 Oct 13, 2022 (156)
110 YY_MCH ss5807344245 Oct 13, 2022 (156)
111 EVA ss5842050481 Oct 13, 2022 (156)
112 EVA ss5847292206 Oct 13, 2022 (156)
113 EVA ss5855295988 Oct 13, 2022 (156)
114 EVA ss5883278335 Oct 13, 2022 (156)
115 EVA ss5968620304 Oct 13, 2022 (156)
116 EVA ss5979781942 Oct 13, 2022 (156)
117 1000Genomes NC_000006.11 - 32680070 Oct 12, 2018 (152)
118 1000Genomes_30x NC_000006.12 - 32712293 Oct 13, 2022 (156)
119 Genetic variation in the Estonian population NC_000006.11 - 32680070 Oct 12, 2018 (152)
120 gnomAD - Genomes NC_000006.12 - 32712293 Apr 26, 2021 (155)
121 Genome of the Netherlands Release 5 NC_000006.11 - 32680070 Apr 26, 2020 (154)
122 HGDP-CEPH-db Supplement 1 NC_000006.10 - 32788048 Apr 26, 2020 (154)
123 HapMap NC_000006.12 - 32712293 Apr 26, 2020 (154)
124 KOREAN population from KRGDB NC_000006.11 - 32680070 Apr 26, 2020 (154)
125 Northern Sweden NC_000006.11 - 32680070 Jul 13, 2019 (153)
126 The PAGE Study NC_000006.12 - 32712293 Jul 13, 2019 (153)
127 Ancient Sardinia genome-wide 1240k capture data generation and analysis NC_000006.11 - 32680070 Apr 26, 2021 (155)
128 Qatari NC_000006.11 - 32680070 Apr 26, 2020 (154)
129 SGDP_PRJ NC_000006.11 - 32680070 Apr 26, 2020 (154)
130 Siberian NC_000006.11 - 32680070 Apr 26, 2020 (154)
131 8.3KJPN NC_000006.11 - 32680070 Apr 26, 2021 (155)
132 14KJPN NC_000006.12 - 32712293 Oct 13, 2022 (156)
133 TopMed NC_000006.12 - 32712293 Apr 26, 2021 (155)
134 A Vietnamese Genetic Variation Database NC_000006.11 - 32680070 Jul 13, 2019 (153)
135 ALFA NC_000006.12 - 32712293 Apr 26, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs59109578 May 25, 2008 (130)
rs74843632 Sep 17, 2011 (135)
rs116831840 May 04, 2012 (137)
rs117072766 Aug 16, 2010 (132)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
507505, ss12700672, ss109920591, ss162216694, ss201649457, ss207490339, ss211818795, ss278741591, ss285380883, ss481849174, ss825620793, ss1592320614, ss1712852523, ss3643563422, ss3847829613 NC_000006.10:32788047:C:T NC_000006.12:32712292:C:T (self)
31366948, 12467104, 7780800, 18257881, 6666711, 440517, 8086063, 16319469, 4349011, 34880832, 3880294, ss222318537, ss233415934, ss240482889, ss481881894, ss482841750, ss485719014, ss537579744, ss559120839, ss653052326, ss778633652, ss783305162, ss784257365, ss832566550, ss833168038, ss834091297, ss982786361, ss1073512774, ss1319598162, ss1752631192, ss1804367504, ss1926044133, ss1958895065, ss1970364258, ss2023656921, ss2094826279, ss2095180120, ss2151832657, ss2626316263, ss2634433551, ss2707427465, ss2998841266, ss3022605870, ss3629511452, ss3632351636, ss3633416704, ss3634139297, ss3635059520, ss3635820247, ss3636781452, ss3637573046, ss3638621835, ss3640766819, ss3653119748, ss3666728856, ss3733381846, ss3744551958, ss3745359477, ss3764846632, ss3772853151, ss3785437403, ss3790794558, ss3795673134, ss3829850644, ss3838402871, ss3864302489, ss3911080487, ss3985214590, ss4017267854, ss5176911525, ss5237395643, ss5315144668, ss5364778921, ss5508437902, ss5624625304, ss5640131110, ss5799684637, ss5842050481, ss5847292206, ss5968620304, ss5979781942 NC_000006.11:32680069:C:T NC_000006.12:32712292:C:T (self)
41174558, 221434114, 3102865, 503817, 48618889, 535964378, 3934144880, ss2282993233, ss3025619588, ss3648321948, ss3716939479, ss3726333723, ss3771282348, ss3808002842, ss3843846833, ss4698586820, ss5267973338, ss5465694756, ss5553648623, ss5714781785, ss5807344245, ss5855295988, ss5883278335 NC_000006.12:32712292:C:T NC_000006.12:32712292:C:T (self)
ss42824142, ss71595758, ss74915453, ss79290275, ss98238798, ss98383893, ss122955419, ss154483020, ss159657249, ss160971026, ss172436928, ss174790565, ss410956636 NT_007592.15:32620069:C:T NC_000006.12:32712292:C:T (self)
ss4025195602 NT_113891.3:4125578:C:T NC_000006.12:32712292:C:T (self)
ss4025252242 NT_167247.2:4011026:C:T NC_000006.12:32712292:C:T (self)
ss4025294502 NT_167249.2:4112412:T:T NC_000006.12:32712292:C:T (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

1 citation for rs9275582
PMID Title Author Year Journal
34403736 Fine mapping of the major histocompatibility complex (MHC) in myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) suggests involvement of both HLA class I and class II loci. Hajdarevic R et al. 2021 Brain, behavior, and immunity
Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post761+d5e8e07