Name: rs899393
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs899393

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr4:764578 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: C>A / C>G / C>T
Variation Type: SNV Single Nucleotide Variation
Frequency: T=0.219007 (57969/264690, TOPMED)
T=0.215836 (30227/140046, GnomAD)
T=0.11211 (3168/28258, 14KJPN) (+ 16 more)
T=0.24174 (5432/22470, ALFA)
T=0.11354 (1903/16760, 8.3KJPN)
T=0.2005 (1284/6404, 1000G_30x)
T=0.2015 (1009/5008, 1000G)
T=0.2096 (939/4480, Estonian)
T=0.2992 (1153/3854, ALSPAC)
T=0.3083 (1143/3708, TWINSUK)
T=0.1614 (471/2918, KOREAN)
T=0.1884 (356/1890, HapMap)
T=0.1485 (272/1832, Korea1K)
T=0.280 (279/998, GoNL)
T=0.243 (146/600, NorthernSweden)
T=0.338 (73/216, Qatari)
C=0.411 (65/158, SGDP_PRJ)
T=0.33 (13/40, GENOME_DK)
C=0.4 (3/8, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: PCGF3-AS1 : Non Coding Transcript Variant
PCGF3 : Intron Variant
LOC124900163 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	22470	C=0.75826	A=0.00000, G=0.00000, T=0.24174
European	Sub	17786	C=0.73041	A=0.00000, G=0.00000, T=0.26959
African	Sub	2884	C=0.9296	A=0.0000, G=0.0000, T=0.0704
African Others	Sub	116	C=0.966	A=0.000, G=0.000, T=0.034
African American	Sub	2768	C=0.9281	A=0.0000, G=0.0000, T=0.0719
Asian	Sub	120	C=0.792	A=0.000, G=0.000, T=0.208
East Asian	Sub	94	C=0.84	A=0.00, G=0.00, T=0.16
Other Asian	Sub	26	C=0.62	A=0.00, G=0.00, T=0.38
Latin American 1	Sub	160	C=0.762	A=0.000, G=0.000, T=0.237
Latin American 2	Sub	664	C=0.764	A=0.000, G=0.000, T=0.236
South Asian	Sub	98	C=0.67	A=0.00, G=0.00, T=0.33
Other	Sub	758	C=0.760	A=0.000, G=0.000, T=0.240

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	C=0.780993	T=0.219007
gnomAD - Genomes	Global	Study-wide	140046	C=0.784164	T=0.215836
gnomAD - Genomes	European	Sub	75834	C=0.72129	T=0.27871
gnomAD - Genomes	African	Sub	41970	C=0.91053	T=0.08947
gnomAD - Genomes	American	Sub	13650	C=0.77524	T=0.22476
gnomAD - Genomes	Ashkenazi Jewish	Sub	3316	C=0.6541	T=0.3459
gnomAD - Genomes	East Asian	Sub	3124	C=0.7999	T=0.2001
gnomAD - Genomes	Other	Sub	2152	C=0.7695	T=0.2305
14KJPN	JAPANESE	Study-wide	28258	C=0.88789	T=0.11211
Allele Frequency Aggregator	Total	Global	22470	C=0.75826	A=0.00000, G=0.00000, T=0.24174
Allele Frequency Aggregator	European	Sub	17786	C=0.73041	A=0.00000, G=0.00000, T=0.26959
Allele Frequency Aggregator	African	Sub	2884	C=0.9296	A=0.0000, G=0.0000, T=0.0704
Allele Frequency Aggregator	Other	Sub	758	C=0.760	A=0.000, G=0.000, T=0.240
Allele Frequency Aggregator	Latin American 2	Sub	664	C=0.764	A=0.000, G=0.000, T=0.236
Allele Frequency Aggregator	Latin American 1	Sub	160	C=0.762	A=0.000, G=0.000, T=0.237
Allele Frequency Aggregator	Asian	Sub	120	C=0.792	A=0.000, G=0.000, T=0.208
Allele Frequency Aggregator	South Asian	Sub	98	C=0.67	A=0.00, G=0.00, T=0.33
8.3KJPN	JAPANESE	Study-wide	16760	C=0.88646	T=0.11354
1000Genomes_30x	Global	Study-wide	6404	C=0.7995	T=0.2005
1000Genomes_30x	African	Sub	1786	C=0.9406	T=0.0594
1000Genomes_30x	Europe	Sub	1266	C=0.6848	T=0.3152
1000Genomes_30x	South Asian	Sub	1202	C=0.7363	T=0.2637
1000Genomes_30x	East Asian	Sub	1170	C=0.7940	T=0.2060
1000Genomes_30x	American	Sub	980	C=0.774	T=0.226
1000Genomes	Global	Study-wide	5008	C=0.7985	T=0.2015
1000Genomes	African	Sub	1322	C=0.9440	T=0.0560
1000Genomes	East Asian	Sub	1008	C=0.7956	T=0.2044
1000Genomes	Europe	Sub	1006	C=0.6899	T=0.3101
1000Genomes	South Asian	Sub	978	C=0.743	T=0.257
1000Genomes	American	Sub	694	C=0.761	T=0.239
Genetic variation in the Estonian population	Estonian	Study-wide	4480	C=0.7904	T=0.2096
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.7008	T=0.2992
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.6917	T=0.3083
KOREAN population from KRGDB	KOREAN	Study-wide	2918	C=0.8386	T=0.1614
HapMap	Global	Study-wide	1890	C=0.8116	T=0.1884
HapMap	American	Sub	768	C=0.767	T=0.233
HapMap	African	Sub	692	C=0.905	T=0.095
HapMap	Asian	Sub	254	C=0.815	T=0.185
HapMap	Europe	Sub	176	C=0.636	T=0.364
Korean Genome Project	KOREAN	Study-wide	1832	C=0.8515	T=0.1485
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	C=0.720	T=0.280
Northern Sweden	ACPOP	Study-wide	600	C=0.757	T=0.243
Qatari	Global	Study-wide	216	C=0.662	T=0.338
SGDP_PRJ	Global	Study-wide	158	C=0.411	T=0.589
The Danish reference pan genome	Danish	Study-wide	40	C=0.68	T=0.33
Siberian	Global	Study-wide	8	C=0.4	T=0.6

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 4	NC_000004.12:g.764578C>A
GRCh38.p14 chr 4	NC_000004.12:g.764578C>G
GRCh38.p14 chr 4	NC_000004.12:g.764578C>T
GRCh37.p13 chr 4	NC_000004.11:g.758366C>A
GRCh37.p13 chr 4	NC_000004.11:g.758366C>G
GRCh37.p13 chr 4	NC_000004.11:g.758366C>T

Gene: PCGF3, polycomb group ring finger 3 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
PCGF3 transcript variant 1	NM_001317836.3:c.601-406C… NM_001317836.3:c.601-406C>A	N/A	Intron Variant
PCGF3 transcript variant 3	NM_001395245.1:c.601-406C… NM_001395245.1:c.601-406C>A	N/A	Intron Variant
PCGF3 transcript variant 4	NM_001395246.1:c.601-406C… NM_001395246.1:c.601-406C>A	N/A	Intron Variant
PCGF3 transcript variant 5	NM_001395247.1:c.601-406C… NM_001395247.1:c.601-406C>A	N/A	Intron Variant
PCGF3 transcript variant 6	NM_001395248.1:c.601-406C… NM_001395248.1:c.601-406C>A	N/A	Intron Variant
PCGF3 transcript variant 7	NM_001395249.1:c.601-406C… NM_001395249.1:c.601-406C>A	N/A	Intron Variant
PCGF3 transcript variant 8	NM_001395250.1:c.499-406C… NM_001395250.1:c.499-406C>A	N/A	Intron Variant
PCGF3 transcript variant 9	NM_001395251.1:c.499-406C… NM_001395251.1:c.499-406C>A	N/A	Intron Variant
PCGF3 transcript variant 2	NM_006315.7:c.601-406C>A	N/A	Intron Variant
PCGF3 transcript variant X1	XM_047449500.1:c.499-406C… XM_047449500.1:c.499-406C>A	N/A	Intron Variant

Gene: PCGF3-AS1, PCGF3 antisense RNA 1 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
PCGF3-AS1 transcript variant 3	NR_171661.1:n.246G>T	N/A	Non Coding Transcript Variant
PCGF3-AS1 transcript variant 3	NR_171661.1:n.246G>C	N/A	Non Coding Transcript Variant
PCGF3-AS1 transcript variant 3	NR_171661.1:n.246G>A	N/A	Non Coding Transcript Variant
PCGF3-AS1 transcript variant 1	NR_036511.1:n.	N/A	Genic Downstream Transcript Variant
PCGF3-AS1 transcript variant 2	NR_036512.1:n.	N/A	Genic Downstream Transcript Variant

Gene: LOC124900163, uncharacterized LOC124900163 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LOC124900163 transcript variant X1	XM_047416472.1:c.-2792-17… XM_047416472.1:c.-2792-1739G>T	N/A	Intron Variant
LOC124900163 transcript variant X3	XM_047416474.1:c.-2693-18… XM_047416474.1:c.-2693-1838G>T	N/A	Intron Variant
LOC124900163 transcript variant X2	XM_047416473.1:c.-2882=	N/A	5 Prime UTR Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	C=	A	G	T
GRCh38.p14 chr 4	NC_000004.12:g.764578=	NC_000004.12:g.764578C>A	NC_000004.12:g.764578C>G	NC_000004.12:g.764578C>T
GRCh37.p13 chr 4	NC_000004.11:g.758366=	NC_000004.11:g.758366C>A	NC_000004.11:g.758366C>G	NC_000004.11:g.758366C>T
LOC124900163 transcript variant X2	XM_047416473.1:c.-2882=	XM_047416473.1:c.-2882G>T	XM_047416473.1:c.-2882G>C	XM_047416473.1:c.-2882G>A
PCGF3-AS1 transcript variant 3	NR_171661.1:n.246=	NR_171661.1:n.246G>T	NR_171661.1:n.246G>C	NR_171661.1:n.246G>A
PCGF3 transcript variant 1	NM_001317836.3:c.601-406=	NM_001317836.3:c.601-406C>A	NM_001317836.3:c.601-406C>G	NM_001317836.3:c.601-406C>T
PCGF3 transcript variant 3	NM_001395245.1:c.601-406=	NM_001395245.1:c.601-406C>A	NM_001395245.1:c.601-406C>G	NM_001395245.1:c.601-406C>T
PCGF3 transcript variant 4	NM_001395246.1:c.601-406=	NM_001395246.1:c.601-406C>A	NM_001395246.1:c.601-406C>G	NM_001395246.1:c.601-406C>T
PCGF3 transcript variant 5	NM_001395247.1:c.601-406=	NM_001395247.1:c.601-406C>A	NM_001395247.1:c.601-406C>G	NM_001395247.1:c.601-406C>T
PCGF3 transcript variant 6	NM_001395248.1:c.601-406=	NM_001395248.1:c.601-406C>A	NM_001395248.1:c.601-406C>G	NM_001395248.1:c.601-406C>T
PCGF3 transcript variant 7	NM_001395249.1:c.601-406=	NM_001395249.1:c.601-406C>A	NM_001395249.1:c.601-406C>G	NM_001395249.1:c.601-406C>T
PCGF3 transcript variant 8	NM_001395250.1:c.499-406=	NM_001395250.1:c.499-406C>A	NM_001395250.1:c.499-406C>G	NM_001395250.1:c.499-406C>T
PCGF3 transcript variant 9	NM_001395251.1:c.499-406=	NM_001395251.1:c.499-406C>A	NM_001395251.1:c.499-406C>G	NM_001395251.1:c.499-406C>T
PCGF3 transcript	NM_006315.4:c.601-406=	NM_006315.4:c.601-406C>A	NM_006315.4:c.601-406C>G	NM_006315.4:c.601-406C>T
PCGF3 transcript variant 2	NM_006315.7:c.601-406=	NM_006315.7:c.601-406C>A	NM_006315.7:c.601-406C>G	NM_006315.7:c.601-406C>T
PCGF3 transcript variant X1	XM_005272250.1:c.601-406=	XM_005272250.1:c.601-406C>A	XM_005272250.1:c.601-406C>G	XM_005272250.1:c.601-406C>T
PCGF3 transcript variant X2	XM_005272251.1:c.601-406=	XM_005272251.1:c.601-406C>A	XM_005272251.1:c.601-406C>G	XM_005272251.1:c.601-406C>T
PCGF3 transcript variant X3	XM_005272253.1:c.499-406=	XM_005272253.1:c.499-406C>A	XM_005272253.1:c.499-406C>G	XM_005272253.1:c.499-406C>T
PCGF3 transcript variant X4	XM_005272254.1:c.499-406=	XM_005272254.1:c.499-406C>A	XM_005272254.1:c.499-406C>G	XM_005272254.1:c.499-406C>T
PCGF3 transcript variant X6	XM_005272255.1:c.499-406=	XM_005272255.1:c.499-406C>A	XM_005272255.1:c.499-406C>G	XM_005272255.1:c.499-406C>T
PCGF3 transcript variant X7	XM_005272256.1:c.499-406=	XM_005272256.1:c.499-406C>A	XM_005272256.1:c.499-406C>G	XM_005272256.1:c.499-406C>T
LOC124900163 transcript variant X1	XM_047416472.1:c.-2792-1739=	XM_047416472.1:c.-2792-1739G>T	XM_047416472.1:c.-2792-1739G>C	XM_047416472.1:c.-2792-1739G>A
LOC124900163 transcript variant X3	XM_047416474.1:c.-2693-1838=	XM_047416474.1:c.-2693-1838G>T	XM_047416474.1:c.-2693-1838G>C	XM_047416474.1:c.-2693-1838G>A
PCGF3 transcript variant X1	XM_047449500.1:c.499-406=	XM_047449500.1:c.499-406C>A	XM_047449500.1:c.499-406C>G	XM_047449500.1:c.499-406C>T

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

62 SubSNP, 19 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	TSC-CSHL	ss1330741	Oct 05, 2000 (86)
2	SC_JCM	ss5928322	Feb 20, 2003 (111)
3	PERLEGEN	ss23962752	Sep 20, 2004 (123)
4	ABI	ss44490060	Mar 13, 2006 (126)
5	ILLUMINA	ss65788263	Oct 16, 2006 (127)
6	ILLUMINA	ss74898149	Dec 07, 2007 (129)
7	HGSV	ss82746845	Dec 15, 2007 (130)
8	KRIBB_YJKIM	ss119372589	Dec 01, 2009 (131)
9	COMPLETE_GENOMICS	ss165986731	Jul 04, 2010 (132)
10	ILLUMINA	ss174774002	Jul 04, 2010 (132)
11	1000GENOMES	ss210561901	Jul 14, 2010 (132)
12	1000GENOMES	ss220689692	Jul 14, 2010 (132)
13	1000GENOMES	ss232222336	Jul 14, 2010 (132)
14	1000GENOMES	ss239551766	Jul 15, 2010 (132)
15	GMI	ss284828320	Apr 25, 2013 (138)
16	ILLUMINA	ss537573213	Sep 08, 2015 (146)
17	SSMP	ss651001506	Apr 25, 2013 (138)
18	EVA-GONL	ss979664881	Aug 21, 2014 (142)
19	1000GENOMES	ss1308056355	Aug 21, 2014 (142)
20	DDI	ss1429737078	Apr 01, 2015 (144)
21	EVA_GENOME_DK	ss1580377491	Apr 01, 2015 (144)
22	EVA_DECODE	ss1589161839	Apr 01, 2015 (144)
23	EVA_UK10K_ALSPAC	ss1609220828	Apr 01, 2015 (144)
24	EVA_UK10K_TWINSUK	ss1652214861	Apr 01, 2015 (144)
25	EVA_SVP	ss1712645232	Apr 01, 2015 (144)
26	WEILL_CORNELL_DGM	ss1922894903	Feb 12, 2016 (147)
27	GENOMED	ss1969636132	Jul 19, 2016 (147)
28	JJLAB	ss2022021604	Sep 14, 2016 (149)
29	USC_VALOUEV	ss2150126653	Dec 20, 2016 (150)
30	HUMAN_LONGEVITY	ss2259757452	Dec 20, 2016 (150)
31	SYSTEMSBIOZJU	ss2625511553	Nov 08, 2017 (151)
32	GRF	ss2705561210	Nov 08, 2017 (151)
33	GNOMAD	ss2804595949	Nov 08, 2017 (151)
34	SWEGEN	ss2993979336	Nov 08, 2017 (151)
35	BIOINF_KMB_FNS_UNIBA	ss3024780434	Nov 08, 2017 (151)
36	CSHL	ss3345494250	Nov 08, 2017 (151)
37	ILLUMINA	ss3628882382	Oct 12, 2018 (152)
38	ILLUMINA	ss3638467155	Oct 12, 2018 (152)
39	EGCUT_WGS	ss3661918461	Jul 13, 2019 (153)
40	EVA_DECODE	ss3711219896	Jul 13, 2019 (153)
41	ACPOP	ss3730771184	Jul 13, 2019 (153)
42	EVA	ss3761274176	Jul 13, 2019 (153)
43	KHV_HUMAN_GENOMES	ss3804415247	Jul 13, 2019 (153)
44	EVA	ss3828322236	Apr 25, 2020 (154)
45	SGDP_PRJ	ss3858004354	Apr 25, 2020 (154)
46	KRGDB	ss3904127060	Apr 25, 2020 (154)
47	KOGIC	ss3953335088	Apr 25, 2020 (154)
48	EVA	ss4017128602	Apr 26, 2021 (155)
49	TOPMED	ss4599916139	Apr 26, 2021 (155)
50	TOMMO_GENOMICS	ss5163777644	Apr 26, 2021 (155)
51	1000G_HIGH_COVERAGE	ss5257712854	Oct 17, 2022 (156)
52	EVA	ss5346319638	Oct 17, 2022 (156)
53	HUGCELL_USP	ss5456672619	Oct 17, 2022 (156)
54	EVA	ss5507365736	Oct 17, 2022 (156)
55	1000G_HIGH_COVERAGE	ss5537999290	Oct 17, 2022 (156)
56	SANFORD_IMAGENETICS	ss5634157730	Oct 17, 2022 (156)
57	TOMMO_GENOMICS	ss5697298333	Oct 17, 2022 (156)
58	YY_MCH	ss5804670174	Oct 17, 2022 (156)
59	EVA	ss5843416977	Oct 17, 2022 (156)
60	EVA	ss5854042946	Oct 17, 2022 (156)
61	EVA	ss5861784113	Oct 17, 2022 (156)
62	EVA	ss5962533842	Oct 17, 2022 (156)
63	1000Genomes	NC_000004.11 - 758366	Oct 12, 2018 (152)
64	1000Genomes_30x	NC_000004.12 - 764578	Oct 17, 2022 (156)
65	The Avon Longitudinal Study of Parents and Children	NC_000004.11 - 758366	Oct 12, 2018 (152)
66	Genetic variation in the Estonian population	NC_000004.11 - 758366	Oct 12, 2018 (152)
67	The Danish reference pan genome	NC_000004.11 - 758366	Apr 25, 2020 (154)
68	gnomAD - Genomes	NC_000004.12 - 764578	Apr 26, 2021 (155)
69	Genome of the Netherlands Release 5	NC_000004.11 - 758366	Apr 25, 2020 (154)
70	HapMap	NC_000004.12 - 764578	Apr 25, 2020 (154)
71	KOREAN population from KRGDB	NC_000004.11 - 758366	Apr 25, 2020 (154)
72	Korean Genome Project	NC_000004.12 - 764578	Apr 25, 2020 (154)
73	Northern Sweden	NC_000004.11 - 758366	Jul 13, 2019 (153)
74	Qatari	NC_000004.11 - 758366	Apr 25, 2020 (154)
75	SGDP_PRJ	NC_000004.11 - 758366	Apr 25, 2020 (154)
76	Siberian	NC_000004.11 - 758366	Apr 25, 2020 (154)
77	8.3KJPN	NC_000004.11 - 758366	Apr 26, 2021 (155)
78	14KJPN	NC_000004.12 - 764578	Oct 17, 2022 (156)
79	TopMed	NC_000004.12 - 764578	Apr 26, 2021 (155)
80	UK 10K study - Twins	NC_000004.11 - 758366	Oct 12, 2018 (152)
81	ALFA	NC_000004.12 - 764578	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs58922262	May 25, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
13595170121	NC_000004.12:764577:C:A	NC_000004.12:764577:C:A	(self)
13595170121	NC_000004.12:764577:C:G	NC_000004.12:764577:C:G	(self)
ss82746845	NC_000004.9:748195:C:T	NC_000004.12:764577:C:T	(self)
ss165986731, ss210561901, ss284828320, ss1589161839, ss1712645232	NC_000004.10:748365:C:T	NC_000004.12:764577:C:T	(self)
19393283, 10811535, 7656709, 6542430, 4752303, 11304454, 4056049, 4936833, 10021334, 2643007, 21746951, 10811535, ss220689692, ss232222336, ss239551766, ss537573213, ss651001506, ss979664881, ss1308056355, ss1429737078, ss1580377491, ss1609220828, ss1652214861, ss1922894903, ss1969636132, ss2022021604, ss2150126653, ss2625511553, ss2705561210, ss2804595949, ss2993979336, ss3345494250, ss3628882382, ss3638467155, ss3661918461, ss3730771184, ss3761274176, ss3828322236, ss3858004354, ss3904127060, ss4017128602, ss5163777644, ss5346319638, ss5507365736, ss5634157730, ss5843416977, ss5962533842	NC_000004.11:758365:C:T	NC_000004.12:764577:C:T	(self)
25525225, 137680057, 2542338, 9713089, 31135437, 437293695, 13595170121, ss2259757452, ss3024780434, ss3711219896, ss3804415247, ss3953335088, ss4599916139, ss5257712854, ss5456672619, ss5537999290, ss5697298333, ss5804670174, ss5854042946, ss5861784113	NC_000004.12:764577:C:T	NC_000004.12:764577:C:T	(self)
ss1330741, ss5928322, ss23962752, ss44490060, ss65788263, ss74898149, ss119372589, ss174774002	NT_037622.5:748365:C:T	NC_000004.12:764577:C:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs899393

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs899393