Name: rs899389
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs899389

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr4:752183 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: C>A / C>G / C>T
Variation Type: SNV Single Nucleotide Variation
Frequency: G=0.234659 (62112/264690, TOPMED)
G=0.15029 (2135/14206, ALFA)
G=0.2094 (1341/6404, 1000G_30x) (+ 14 more)
G=0.2103 (1053/5008, 1000G)
G=0.3337 (1495/4480, Estonian)
G=0.2652 (1022/3854, ALSPAC)
G=0.2710 (1005/3708, TWINSUK)
G=0.2863 (839/2930, KOREAN)
G=0.3013 (552/1832, Korea1K)
G=0.291 (290/998, GoNL)
G=0.288 (173/600, NorthernSweden)
G=0.236 (78/330, HapMap)
G=0.065 (14/216, Qatari)
C=0.407 (87/214, SGDP_PRJ)
G=0.305 (64/210, Vietnamese)
G=0.33 (13/40, GENOME_DK)
C=0.36 (5/14, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: PCGF3 : Intron Variant
LOC124900163 : 3 Prime UTR Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	14206	C=0.84971	G=0.15029, T=0.00000
European	Sub	10970	C=0.81158	G=0.18842, T=0.00000
African	Sub	2208	C=0.9905	G=0.0095, T=0.0000
African Others	Sub	82	C=1.00	G=0.00, T=0.00
African American	Sub	2126	C=0.9901	G=0.0099, T=0.0000
Asian	Sub	48	C=0.94	G=0.06, T=0.00
East Asian	Sub	32	C=0.97	G=0.03, T=0.00
Other Asian	Sub	16	C=0.88	G=0.12, T=0.00
Latin American 1	Sub	100	C=1.00	G=0.00, T=0.00
Latin American 2	Sub	266	C=1.000	G=0.000, T=0.000
South Asian	Sub	78	C=1.00	G=0.00, T=0.00
Other	Sub	536	C=0.918	G=0.082, T=0.000

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	C=0.765341	G=0.234659
Allele Frequency Aggregator	Total	Global	14206	C=0.84971	G=0.15029, T=0.00000
Allele Frequency Aggregator	European	Sub	10970	C=0.81158	G=0.18842, T=0.00000
Allele Frequency Aggregator	African	Sub	2208	C=0.9905	G=0.0095, T=0.0000
Allele Frequency Aggregator	Other	Sub	536	C=0.918	G=0.082, T=0.000
Allele Frequency Aggregator	Latin American 2	Sub	266	C=1.000	G=0.000, T=0.000
Allele Frequency Aggregator	Latin American 1	Sub	100	C=1.00	G=0.00, T=0.00
Allele Frequency Aggregator	South Asian	Sub	78	C=1.00	G=0.00, T=0.00
Allele Frequency Aggregator	Asian	Sub	48	C=0.94	G=0.06, T=0.00
1000Genomes_30x	Global	Study-wide	6404	C=0.7904	G=0.2094, T=0.0002
1000Genomes_30x	African	Sub	1786	C=0.8970	G=0.1030, T=0.0000
1000Genomes_30x	Europe	Sub	1266	C=0.7354	G=0.2638, T=0.0008
1000Genomes_30x	South Asian	Sub	1202	C=0.9276	G=0.0724, T=0.0000
1000Genomes_30x	East Asian	Sub	1170	C=0.6632	G=0.3368, T=0.0000
1000Genomes_30x	American	Sub	980	C=0.651	G=0.349, T=0.000
1000Genomes	Global	Study-wide	5008	C=0.7897	G=0.2103
1000Genomes	African	Sub	1322	C=0.8911	G=0.1089
1000Genomes	East Asian	Sub	1008	C=0.6657	G=0.3343
1000Genomes	Europe	Sub	1006	C=0.7425	G=0.2575
1000Genomes	South Asian	Sub	978	C=0.927	G=0.073
1000Genomes	American	Sub	694	C=0.651	G=0.349
Genetic variation in the Estonian population	Estonian	Study-wide	4480	C=0.6663	G=0.3337
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.7348	G=0.2652
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.7290	G=0.2710
KOREAN population from KRGDB	KOREAN	Study-wide	2930	C=0.7137	G=0.2863, T=0.0000
Korean Genome Project	KOREAN	Study-wide	1832	C=0.6987	G=0.3013
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	C=0.709	G=0.291
Northern Sweden	ACPOP	Study-wide	600	C=0.712	G=0.288
HapMap	Global	Study-wide	330	C=0.764	G=0.236
HapMap	African	Sub	120	C=0.867	G=0.133
HapMap	American	Sub	120	C=0.717	G=0.283
HapMap	Asian	Sub	90	C=0.69	G=0.31
Qatari	Global	Study-wide	216	C=0.935	G=0.065
SGDP_PRJ	Global	Study-wide	214	C=0.407	G=0.593
A Vietnamese Genetic Variation Database	Global	Study-wide	210	C=0.695	G=0.305
The Danish reference pan genome	Danish	Study-wide	40	C=0.68	G=0.33
Siberian	Global	Study-wide	14	C=0.36	G=0.64

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 4	NC_000004.12:g.752183C>A
GRCh38.p14 chr 4	NC_000004.12:g.752183C>G
GRCh38.p14 chr 4	NC_000004.12:g.752183C>T
GRCh37.p13 chr 4	NC_000004.11:g.745971C>A
GRCh37.p13 chr 4	NC_000004.11:g.745971C>G
GRCh37.p13 chr 4	NC_000004.11:g.745971C>T

Gene: PCGF3, polycomb group ring finger 3 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
PCGF3 transcript variant 1	NM_001317836.3:c.462+7495… NM_001317836.3:c.462+7495C>A	N/A	Intron Variant
PCGF3 transcript variant 3	NM_001395245.1:c.462+7495… NM_001395245.1:c.462+7495C>A	N/A	Intron Variant
PCGF3 transcript variant 4	NM_001395246.1:c.462+7495… NM_001395246.1:c.462+7495C>A	N/A	Intron Variant
PCGF3 transcript variant 5	NM_001395247.1:c.462+7495… NM_001395247.1:c.462+7495C>A	N/A	Intron Variant
PCGF3 transcript variant 6	NM_001395248.1:c.462+7495… NM_001395248.1:c.462+7495C>A	N/A	Intron Variant
PCGF3 transcript variant 7	NM_001395249.1:c.462+7495… NM_001395249.1:c.462+7495C>A	N/A	Intron Variant
PCGF3 transcript variant 8	NM_001395250.1:c.360+7495… NM_001395250.1:c.360+7495C>A	N/A	Intron Variant
PCGF3 transcript variant 9	NM_001395251.1:c.360+7495… NM_001395251.1:c.360+7495C>A	N/A	Intron Variant
PCGF3 transcript variant 2	NM_006315.7:c.462+7495C>A	N/A	Intron Variant
PCGF3 transcript variant X1	XM_047449500.1:c.360+7495… XM_047449500.1:c.360+7495C>A	N/A	Intron Variant

Gene: LOC124900163, uncharacterized LOC124900163 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LOC124900163 transcript variant X1	XM_047416472.1:c.*5981=	N/A	3 Prime UTR Variant
LOC124900163 transcript variant X2	XM_047416473.1:c.*5981=	N/A	3 Prime UTR Variant
LOC124900163 transcript variant X3	XM_047416474.1:c.*5981=	N/A	3 Prime UTR Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	C=	A	G	T
GRCh38.p14 chr 4	NC_000004.12:g.752183=	NC_000004.12:g.752183C>A	NC_000004.12:g.752183C>G	NC_000004.12:g.752183C>T
GRCh37.p13 chr 4	NC_000004.11:g.745971=	NC_000004.11:g.745971C>A	NC_000004.11:g.745971C>G	NC_000004.11:g.745971C>T
LOC124900163 transcript variant X2	XM_047416473.1:c.*5981=	XM_047416473.1:c.*5981G>T	XM_047416473.1:c.*5981G>C	XM_047416473.1:c.*5981G>A
LOC124900163 transcript variant X1	XM_047416472.1:c.*5981=	XM_047416472.1:c.*5981G>T	XM_047416472.1:c.*5981G>C	XM_047416472.1:c.*5981G>A
LOC124900163 transcript variant X3	XM_047416474.1:c.*5981=	XM_047416474.1:c.*5981G>T	XM_047416474.1:c.*5981G>C	XM_047416474.1:c.*5981G>A
PCGF3 transcript variant 1	NM_001317836.3:c.462+7495=	NM_001317836.3:c.462+7495C>A	NM_001317836.3:c.462+7495C>G	NM_001317836.3:c.462+7495C>T
PCGF3 transcript variant 3	NM_001395245.1:c.462+7495=	NM_001395245.1:c.462+7495C>A	NM_001395245.1:c.462+7495C>G	NM_001395245.1:c.462+7495C>T
PCGF3 transcript variant 4	NM_001395246.1:c.462+7495=	NM_001395246.1:c.462+7495C>A	NM_001395246.1:c.462+7495C>G	NM_001395246.1:c.462+7495C>T
PCGF3 transcript variant 5	NM_001395247.1:c.462+7495=	NM_001395247.1:c.462+7495C>A	NM_001395247.1:c.462+7495C>G	NM_001395247.1:c.462+7495C>T
PCGF3 transcript variant 6	NM_001395248.1:c.462+7495=	NM_001395248.1:c.462+7495C>A	NM_001395248.1:c.462+7495C>G	NM_001395248.1:c.462+7495C>T
PCGF3 transcript variant 7	NM_001395249.1:c.462+7495=	NM_001395249.1:c.462+7495C>A	NM_001395249.1:c.462+7495C>G	NM_001395249.1:c.462+7495C>T
PCGF3 transcript variant 8	NM_001395250.1:c.360+7495=	NM_001395250.1:c.360+7495C>A	NM_001395250.1:c.360+7495C>G	NM_001395250.1:c.360+7495C>T
PCGF3 transcript variant 9	NM_001395251.1:c.360+7495=	NM_001395251.1:c.360+7495C>A	NM_001395251.1:c.360+7495C>G	NM_001395251.1:c.360+7495C>T
PCGF3 transcript	NM_006315.4:c.462+7495=	NM_006315.4:c.462+7495C>A	NM_006315.4:c.462+7495C>G	NM_006315.4:c.462+7495C>T
PCGF3 transcript variant 2	NM_006315.7:c.462+7495=	NM_006315.7:c.462+7495C>A	NM_006315.7:c.462+7495C>G	NM_006315.7:c.462+7495C>T
PCGF3 transcript variant X1	XM_005272250.1:c.462+7495=	XM_005272250.1:c.462+7495C>A	XM_005272250.1:c.462+7495C>G	XM_005272250.1:c.462+7495C>T
PCGF3 transcript variant X2	XM_005272251.1:c.462+7495=	XM_005272251.1:c.462+7495C>A	XM_005272251.1:c.462+7495C>G	XM_005272251.1:c.462+7495C>T
PCGF3 transcript variant X3	XM_005272252.1:c.462+7495=	XM_005272252.1:c.462+7495C>A	XM_005272252.1:c.462+7495C>G	XM_005272252.1:c.462+7495C>T
PCGF3 transcript variant X3	XM_005272253.1:c.360+7495=	XM_005272253.1:c.360+7495C>A	XM_005272253.1:c.360+7495C>G	XM_005272253.1:c.360+7495C>T
PCGF3 transcript variant X4	XM_005272254.1:c.360+7495=	XM_005272254.1:c.360+7495C>A	XM_005272254.1:c.360+7495C>G	XM_005272254.1:c.360+7495C>T
PCGF3 transcript variant X6	XM_005272255.1:c.360+7495=	XM_005272255.1:c.360+7495C>A	XM_005272255.1:c.360+7495C>G	XM_005272255.1:c.360+7495C>T
PCGF3 transcript variant X7	XM_005272256.1:c.360+7495=	XM_005272256.1:c.360+7495C>A	XM_005272256.1:c.360+7495C>G	XM_005272256.1:c.360+7495C>T
PCGF3 transcript variant X1	XM_047449500.1:c.360+7495=	XM_047449500.1:c.360+7495C>A	XM_047449500.1:c.360+7495C>G	XM_047449500.1:c.360+7495C>T

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

74 SubSNP, 23 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	TSC-CSHL	ss1330737	Oct 05, 2000 (86)
2	SC_JCM	ss6304579	Feb 20, 2003 (111)
3	WI_SSAHASNP	ss6459856	Feb 20, 2003 (111)
4	CSHL-HAPMAP	ss17036148	Feb 27, 2004 (120)
5	SSAHASNP	ss22143202	Apr 05, 2004 (121)
6	PERLEGEN	ss23962718	Sep 20, 2004 (123)
7	ABI	ss44579426	Mar 15, 2006 (126)
8	HGSV	ss83606390	Dec 15, 2007 (130)
9	HUMANGENOME_JCVI	ss98925762	Feb 05, 2009 (130)
10	BGI	ss104031590	Dec 01, 2009 (131)
11	ILLUMINA-UK	ss116834928	Feb 14, 2009 (130)
12	ENSEMBL	ss133396126	Dec 01, 2009 (131)
13	GMI	ss156737126	Dec 01, 2009 (131)
14	COMPLETE_GENOMICS	ss161886294	Jul 04, 2010 (132)
15	BCM-HGSC-SUB	ss206589139	Jul 04, 2010 (132)
16	1000GENOMES	ss220689630	Jul 14, 2010 (132)
17	1000GENOMES	ss232222273	Jul 14, 2010 (132)
18	1000GENOMES	ss239551714	Jul 15, 2010 (132)
19	BL	ss252869415	May 09, 2011 (134)
20	GMI	ss277536484	May 04, 2012 (137)
21	PJP	ss293052593	May 09, 2011 (134)
22	TISHKOFF	ss557249017	Apr 25, 2013 (138)
23	SSMP	ss651001359	Apr 25, 2013 (138)
24	EVA-GONL	ss979664697	Aug 21, 2014 (142)
25	JMKIDD_LAB	ss1071210318	Aug 21, 2014 (142)
26	1000GENOMES	ss1308055705	Aug 21, 2014 (142)
27	EVA_GENOME_DK	ss1580377421	Apr 01, 2015 (144)
28	EVA_DECODE	ss1589161658	Apr 01, 2015 (144)
29	EVA_UK10K_ALSPAC	ss1609220497	Apr 01, 2015 (144)
30	EVA_UK10K_TWINSUK	ss1652214530	Apr 01, 2015 (144)
31	HAMMER_LAB	ss1800779610	Sep 08, 2015 (146)
32	WEILL_CORNELL_DGM	ss1922894707	Feb 12, 2016 (147)
33	GENOMED	ss1969636108	Jul 19, 2016 (147)
34	JJLAB	ss2022021529	Sep 14, 2016 (149)
35	USC_VALOUEV	ss2150126560	Dec 20, 2016 (150)
36	HUMAN_LONGEVITY	ss2259756244	Dec 20, 2016 (150)
37	SYSTEMSBIOZJU	ss2625511511	Nov 08, 2017 (151)
38	GRF	ss2705561088	Nov 08, 2017 (151)
39	GNOMAD	ss2804594181	Nov 08, 2017 (151)
40	SWEGEN	ss2993979062	Nov 08, 2017 (151)
41	BIOINF_KMB_FNS_UNIBA	ss3024780392	Nov 08, 2017 (151)
42	CSHL	ss3345494159	Nov 08, 2017 (151)
43	URBANLAB	ss3647631024	Oct 12, 2018 (152)
44	EGCUT_WGS	ss3661918199	Jul 13, 2019 (153)
45	EVA_DECODE	ss3711219565	Jul 13, 2019 (153)
46	ACPOP	ss3730771046	Jul 13, 2019 (153)
47	EVA	ss3761273931	Jul 13, 2019 (153)
48	PACBIO	ss3784592548	Jul 13, 2019 (153)
49	PACBIO	ss3790066220	Jul 13, 2019 (153)
50	PACBIO	ss3794941257	Jul 13, 2019 (153)
51	KHV_HUMAN_GENOMES	ss3804415080	Jul 13, 2019 (153)
52	EVA	ss3828322170	Apr 25, 2020 (154)
53	EVA	ss3837592239	Apr 25, 2020 (154)
54	EVA	ss3843025485	Apr 25, 2020 (154)
55	SGDP_PRJ	ss3858003872	Apr 25, 2020 (154)
56	KRGDB	ss3904126461	Apr 25, 2020 (154)
57	KOGIC	ss3953334718	Apr 25, 2020 (154)
58	TOPMED	ss4599911587	Apr 26, 2021 (155)
59	TOMMO_GENOMICS	ss5163776809	Apr 26, 2021 (155)
60	TOMMO_GENOMICS	ss5163776810	Apr 26, 2021 (155)
61	1000G_HIGH_COVERAGE	ss5257712246	Oct 17, 2022 (156)
62	EVA	ss5346318611	Oct 17, 2022 (156)
63	HUGCELL_USP	ss5456672204	Oct 17, 2022 (156)
64	EVA	ss5507365692	Oct 17, 2022 (156)
65	1000G_HIGH_COVERAGE	ss5537998497	Oct 17, 2022 (156)
66	SANFORD_IMAGENETICS	ss5634157459	Oct 17, 2022 (156)
67	TOMMO_GENOMICS	ss5697297194	Oct 17, 2022 (156)
68	TOMMO_GENOMICS	ss5697297195	Oct 17, 2022 (156)
69	YY_MCH	ss5804670000	Oct 17, 2022 (156)
70	EVA	ss5843416731	Oct 17, 2022 (156)
71	EVA	ss5854042881	Oct 17, 2022 (156)
72	EVA	ss5861783455	Oct 17, 2022 (156)
73	EVA	ss5962533547	Oct 17, 2022 (156)
74	EVA	ss5980199529	Oct 17, 2022 (156)
75	1000Genomes	NC_000004.11 - 745971	Oct 12, 2018 (152)
76	1000Genomes_30x	NC_000004.12 - 752183	Oct 17, 2022 (156)
77	The Avon Longitudinal Study of Parents and Children	NC_000004.11 - 745971	Oct 12, 2018 (152)
78	Genetic variation in the Estonian population	NC_000004.11 - 745971	Oct 12, 2018 (152)
79	The Danish reference pan genome	NC_000004.11 - 745971	Apr 25, 2020 (154)
80	gnomAD - Genomes Submission ignored due to conflicting rows: Row 137675878 (NC_000004.12:752182:C:G 32540/140106) Row 137675879 (NC_000004.12:752182:C:T 8/140152)	-	Apr 26, 2021 (155)
81	gnomAD - Genomes Submission ignored due to conflicting rows: Row 137675878 (NC_000004.12:752182:C:G 32540/140106) Row 137675879 (NC_000004.12:752182:C:T 8/140152)	-	Apr 26, 2021 (155)
82	Genome of the Netherlands Release 5	NC_000004.11 - 745971	Apr 25, 2020 (154)
83	HapMap	NC_000004.12 - 752183	Apr 25, 2020 (154)
84	KOREAN population from KRGDB	NC_000004.11 - 745971	Apr 25, 2020 (154)
85	Korean Genome Project	NC_000004.12 - 752183	Apr 25, 2020 (154)
86	Northern Sweden	NC_000004.11 - 745971	Jul 13, 2019 (153)
87	Qatari	NC_000004.11 - 745971	Apr 25, 2020 (154)
88	SGDP_PRJ	NC_000004.11 - 745971	Apr 25, 2020 (154)
89	Siberian	NC_000004.11 - 745971	Apr 25, 2020 (154)
90	8.3KJPN Submission ignored due to conflicting rows: Row 21746116 (NC_000004.11:745970:C:G 5487/16760) Row 21746117 (NC_000004.11:745970:C:A 1/16760)	-	Apr 26, 2021 (155)
91	8.3KJPN Submission ignored due to conflicting rows: Row 21746116 (NC_000004.11:745970:C:G 5487/16760) Row 21746117 (NC_000004.11:745970:C:A 1/16760)	-	Apr 26, 2021 (155)
92	14KJPN Submission ignored due to conflicting rows: Row 31134298 (NC_000004.12:752182:C:G 9153/28258) Row 31134299 (NC_000004.12:752182:C:A 1/28258)	-	Oct 17, 2022 (156)
93	14KJPN Submission ignored due to conflicting rows: Row 31134298 (NC_000004.12:752182:C:G 9153/28258) Row 31134299 (NC_000004.12:752182:C:A 1/28258)	-	Oct 17, 2022 (156)
94	TopMed	NC_000004.12 - 752183	Apr 26, 2021 (155)
95	UK 10K study - Twins	NC_000004.11 - 745971	Oct 12, 2018 (152)
96	A Vietnamese Genetic Variation Database	NC_000004.11 - 745971	Jul 13, 2019 (153)
97	ALFA	NC_000004.12 - 752183	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs58508523	May 24, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss5163776810	NC_000004.11:745970:C:A	NC_000004.12:752182:C:A	(self)
ss5697297195	NC_000004.12:752182:C:A	NC_000004.12:752182:C:A
ss83606390	NC_000004.9:735800:C:G	NC_000004.12:752182:C:G	(self)
ss116834928, ss161886294, ss206589139, ss252869415, ss277536484, ss293052593, ss1589161658	NC_000004.10:735970:C:G	NC_000004.12:752182:C:G	(self)
19392618, 10811181, 7656447, 6542360, 4752135, 11303855, 4055911, 4936637, 10020852, 2642914, 10811181, 2364010, ss220689630, ss232222273, ss239551714, ss557249017, ss651001359, ss979664697, ss1071210318, ss1308055705, ss1580377421, ss1609220497, ss1652214530, ss1800779610, ss1922894707, ss1969636108, ss2022021529, ss2150126560, ss2625511511, ss2705561088, ss2804594181, ss2993979062, ss3345494159, ss3661918199, ss3730771046, ss3761273931, ss3784592548, ss3790066220, ss3794941257, ss3828322170, ss3837592239, ss3858003872, ss3904126461, ss5163776809, ss5346318611, ss5507365692, ss5634157459, ss5843416731, ss5962533547, ss5980199529	NC_000004.11:745970:C:G	NC_000004.12:752182:C:G	(self)
25524432, 2542311, 9712719, 437289143, 5715020372, ss2259756244, ss3024780392, ss3647631024, ss3711219565, ss3804415080, ss3843025485, ss3953334718, ss4599911587, ss5257712246, ss5456672204, ss5537998497, ss5697297194, ss5804670000, ss5854042881, ss5861783455	NC_000004.12:752182:C:G	NC_000004.12:752182:C:G	(self)
ss17036148, ss22143202	NT_037622.3:735800:C:G	NC_000004.12:752182:C:G	(self)
ss1330737, ss6304579, ss6459856, ss23962718, ss44579426, ss98925762, ss104031590, ss133396126, ss156737126	NT_037622.5:735970:C:G	NC_000004.12:752182:C:G	(self)
11303855, ss3904126461	NC_000004.11:745970:C:T	NC_000004.12:752182:C:T	(self)
25524432, 5715020372, ss2259756244, ss5537998497	NC_000004.12:752182:C:T	NC_000004.12:752182:C:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs899389

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs899389