Name: rs28539502
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs28539502

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr21:41827356 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: T>C / T>G
Variation Type: SNV Single Nucleotide Variation
Frequency: G=0.150467 (39827/264690, TOPMED)
G=0.165610 (23189/140022, GnomAD)
G=0.15427 (4608/29870, ALFA) (+ 16 more)
G=0.19977 (5645/28258, 14KJPN)
G=0.19773 (3314/16760, 8.3KJPN)
G=0.1516 (971/6404, 1000G_30x)
G=0.1562 (782/5008, 1000G)
G=0.1888 (846/4480, Estonian)
G=0.1720 (663/3854, ALSPAC)
G=0.1664 (617/3708, TWINSUK)
G=0.2099 (615/2930, KOREAN)
G=0.2140 (392/1832, Korea1K)
G=0.139 (139/998, GoNL)
G=0.180 (108/600, NorthernSweden)
G=0.037 (8/216, Qatari)
G=0.306 (66/216, Vietnamese)
T=0.461 (59/128, SGDP_PRJ)
G=0.17 (7/40, GENOME_DK)
T=0.46 (11/24, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: PRDM15 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	29870	T=0.84573	C=0.00000, G=0.15427
European	Sub	24256	T=0.83752	C=0.00000, G=0.16248
African	Sub	2976	T=0.8777	C=0.0000, G=0.1223
African Others	Sub	122	T=0.910	C=0.000, G=0.090
African American	Sub	2854	T=0.8763	C=0.0000, G=0.1237
Asian	Sub	122	T=0.795	C=0.000, G=0.205
East Asian	Sub	96	T=0.79	C=0.00, G=0.21
Other Asian	Sub	26	T=0.81	C=0.00, G=0.19
Latin American 1	Sub	156	T=0.878	C=0.000, G=0.122
Latin American 2	Sub	676	T=0.922	C=0.000, G=0.078
South Asian	Sub	114	T=0.930	C=0.000, G=0.070
Other	Sub	1570	T=0.8739	C=0.0000, G=0.1261

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	T=0.849533	G=0.150467
gnomAD - Genomes	Global	Study-wide	140022	T=0.834390	G=0.165610
gnomAD - Genomes	European	Sub	75846	T=0.81913	G=0.18087
gnomAD - Genomes	African	Sub	41934	T=0.84347	G=0.15653
gnomAD - Genomes	American	Sub	13646	T=0.88971	G=0.11029
gnomAD - Genomes	Ashkenazi Jewish	Sub	3322	T=0.9160	G=0.0840
gnomAD - Genomes	East Asian	Sub	3120	T=0.7391	G=0.2609
gnomAD - Genomes	Other	Sub	2154	T=0.8565	G=0.1435
Allele Frequency Aggregator	Total	Global	29870	T=0.84573	C=0.00000, G=0.15427
Allele Frequency Aggregator	European	Sub	24256	T=0.83752	C=0.00000, G=0.16248
Allele Frequency Aggregator	African	Sub	2976	T=0.8777	C=0.0000, G=0.1223
Allele Frequency Aggregator	Other	Sub	1570	T=0.8739	C=0.0000, G=0.1261
Allele Frequency Aggregator	Latin American 2	Sub	676	T=0.922	C=0.000, G=0.078
Allele Frequency Aggregator	Latin American 1	Sub	156	T=0.878	C=0.000, G=0.122
Allele Frequency Aggregator	Asian	Sub	122	T=0.795	C=0.000, G=0.205
Allele Frequency Aggregator	South Asian	Sub	114	T=0.930	C=0.000, G=0.070
14KJPN	JAPANESE	Study-wide	28258	T=0.80023	G=0.19977
8.3KJPN	JAPANESE	Study-wide	16760	T=0.80227	G=0.19773
1000Genomes_30x	Global	Study-wide	6404	T=0.8484	G=0.1516
1000Genomes_30x	African	Sub	1786	T=0.8505	G=0.1495
1000Genomes_30x	Europe	Sub	1266	T=0.8294	G=0.1706
1000Genomes_30x	South Asian	Sub	1202	T=0.9093	G=0.0907
1000Genomes_30x	East Asian	Sub	1170	T=0.7462	G=0.2538
1000Genomes_30x	American	Sub	980	T=0.916	G=0.084
1000Genomes	Global	Study-wide	5008	T=0.8438	G=0.1562
1000Genomes	African	Sub	1322	T=0.8442	G=0.1558
1000Genomes	East Asian	Sub	1008	T=0.7510	G=0.2490
1000Genomes	Europe	Sub	1006	T=0.8260	G=0.1740
1000Genomes	South Asian	Sub	978	T=0.908	G=0.092
1000Genomes	American	Sub	694	T=0.914	G=0.086
Genetic variation in the Estonian population	Estonian	Study-wide	4480	T=0.8112	G=0.1888
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.8280	G=0.1720
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.8336	G=0.1664
KOREAN population from KRGDB	KOREAN	Study-wide	2930	T=0.7901	G=0.2099
Korean Genome Project	KOREAN	Study-wide	1832	T=0.7860	G=0.2140
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	T=0.861	G=0.139
Northern Sweden	ACPOP	Study-wide	600	T=0.820	G=0.180
Qatari	Global	Study-wide	216	T=0.963	G=0.037
A Vietnamese Genetic Variation Database	Global	Study-wide	216	T=0.694	G=0.306
SGDP_PRJ	Global	Study-wide	128	T=0.461	G=0.539
The Danish reference pan genome	Danish	Study-wide	40	T=0.82	G=0.17
Siberian	Global	Study-wide	24	T=0.46	G=0.54

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 21	NC_000021.9:g.41827356T>C
GRCh38.p14 chr 21	NC_000021.9:g.41827356T>G
GRCh37.p13 chr 21	NC_000021.8:g.43247712T>C
GRCh37.p13 chr 21	NC_000021.8:g.43247712T>G

Gene: PRDM15, PR/SET domain 15 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
PRDM15 transcript variant 2	NM_001040424.3:c.1534+810… NM_001040424.3:c.1534+810A>G	N/A	Intron Variant
PRDM15 transcript variant 3	NM_001282934.2:c.1594+810… NM_001282934.2:c.1594+810A>G	N/A	Intron Variant
PRDM15 transcript variant 1	NM_022115.7:c.1732+810A>G	N/A	Intron Variant
PRDM15 transcript variant 4	NR_104257.2:n.	N/A	Intron Variant
PRDM15 transcript variant 5	NR_104258.2:n.	N/A	Intron Variant
PRDM15 transcript variant 6	NR_104260.1:n.	N/A	Intron Variant
PRDM15 transcript variant 7	NR_135464.2:n.	N/A	Intron Variant
PRDM15 transcript variant X8	XM_006724039.3:c.1594+810… XM_006724039.3:c.1594+810A>G	N/A	Intron Variant
PRDM15 transcript variant X12	XM_006724040.3:c.1534+810… XM_006724040.3:c.1534+810A>G	N/A	Intron Variant
PRDM15 transcript variant X2	XM_011529674.2:c.1492+810… XM_011529674.2:c.1492+810A>G	N/A	Intron Variant
PRDM15 transcript variant X3	XM_011529675.2:c.1594+810… XM_011529675.2:c.1594+810A>G	N/A	Intron Variant
PRDM15 transcript variant X5	XM_011529676.3:c.1594+810… XM_011529676.3:c.1594+810A>G	N/A	Intron Variant
PRDM15 transcript variant X4	XM_011529677.3:c.1594+810… XM_011529677.3:c.1594+810A>G	N/A	Intron Variant
PRDM15 transcript variant X6	XM_011529678.3:c.1594+810… XM_011529678.3:c.1594+810A>G	N/A	Intron Variant
PRDM15 transcript variant X7	XM_011529679.3:c.1594+810… XM_011529679.3:c.1594+810A>G	N/A	Intron Variant
PRDM15 transcript variant X1	XM_011529681.4:c.1606+810… XM_011529681.4:c.1606+810A>G	N/A	Intron Variant
PRDM15 transcript variant X18	XM_011529683.2:c.2083+810… XM_011529683.2:c.2083+810A>G	N/A	Intron Variant
PRDM15 transcript variant X10	XM_017028425.2:c.1534+810… XM_017028425.2:c.1534+810A>G	N/A	Intron Variant
PRDM15 transcript variant X9	XM_047440935.1:c.1432+810… XM_047440935.1:c.1432+810A>G	N/A	Intron Variant
PRDM15 transcript variant X11	XM_047440936.1:c.1534+810… XM_047440936.1:c.1534+810A>G	N/A	Intron Variant
PRDM15 transcript variant X13	XM_047440937.1:c.1594+810… XM_047440937.1:c.1594+810A>G	N/A	Intron Variant
PRDM15 transcript variant X14	XM_047440938.1:c.1432+810… XM_047440938.1:c.1432+810A>G	N/A	Intron Variant
PRDM15 transcript variant X15	XM_047440939.1:c.1534+810… XM_047440939.1:c.1534+810A>G	N/A	Intron Variant
PRDM15 transcript variant X16	XM_047440940.1:c.1432+810… XM_047440940.1:c.1432+810A>G	N/A	Intron Variant
PRDM15 transcript variant X17	XR_007067792.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	T=	C	G
GRCh38.p14 chr 21	NC_000021.9:g.41827356=	NC_000021.9:g.41827356T>C	NC_000021.9:g.41827356T>G
GRCh37.p13 chr 21	NC_000021.8:g.43247712=	NC_000021.8:g.43247712T>C	NC_000021.8:g.43247712T>G
PRDM15 transcript variant 2	NM_001040424.1:c.1645+810=	NM_001040424.1:c.1645+810A>G	NM_001040424.1:c.1645+810A>C
PRDM15 transcript variant 2	NM_001040424.3:c.1534+810=	NM_001040424.3:c.1534+810A>G	NM_001040424.3:c.1534+810A>C
PRDM15 transcript variant 3	NM_001282934.2:c.1594+810=	NM_001282934.2:c.1594+810A>G	NM_001282934.2:c.1594+810A>C
PRDM15 transcript variant 1	NM_022115.3:c.2632+810=	NM_022115.3:c.2632+810A>G	NM_022115.3:c.2632+810A>C
PRDM15 transcript variant 1	NM_022115.7:c.1732+810=	NM_022115.7:c.1732+810A>G	NM_022115.7:c.1732+810A>C
PRDM15 transcript variant X1	XM_005261162.1:c.1705+810=	XM_005261162.1:c.1705+810A>G	XM_005261162.1:c.1705+810A>C
PRDM15 transcript variant X8	XM_006724039.3:c.1594+810=	XM_006724039.3:c.1594+810A>G	XM_006724039.3:c.1594+810A>C
PRDM15 transcript variant X12	XM_006724040.3:c.1534+810=	XM_006724040.3:c.1534+810A>G	XM_006724040.3:c.1534+810A>C
PRDM15 transcript variant X2	XM_011529674.2:c.1492+810=	XM_011529674.2:c.1492+810A>G	XM_011529674.2:c.1492+810A>C
PRDM15 transcript variant X3	XM_011529675.2:c.1594+810=	XM_011529675.2:c.1594+810A>G	XM_011529675.2:c.1594+810A>C
PRDM15 transcript variant X5	XM_011529676.3:c.1594+810=	XM_011529676.3:c.1594+810A>G	XM_011529676.3:c.1594+810A>C
PRDM15 transcript variant X4	XM_011529677.3:c.1594+810=	XM_011529677.3:c.1594+810A>G	XM_011529677.3:c.1594+810A>C
PRDM15 transcript variant X6	XM_011529678.3:c.1594+810=	XM_011529678.3:c.1594+810A>G	XM_011529678.3:c.1594+810A>C
PRDM15 transcript variant X7	XM_011529679.3:c.1594+810=	XM_011529679.3:c.1594+810A>G	XM_011529679.3:c.1594+810A>C
PRDM15 transcript variant X1	XM_011529681.4:c.1606+810=	XM_011529681.4:c.1606+810A>G	XM_011529681.4:c.1606+810A>C
PRDM15 transcript variant X18	XM_011529683.2:c.2083+810=	XM_011529683.2:c.2083+810A>G	XM_011529683.2:c.2083+810A>C
PRDM15 transcript variant X10	XM_017028425.2:c.1534+810=	XM_017028425.2:c.1534+810A>G	XM_017028425.2:c.1534+810A>C
PRDM15 transcript variant X9	XM_047440935.1:c.1432+810=	XM_047440935.1:c.1432+810A>G	XM_047440935.1:c.1432+810A>C
PRDM15 transcript variant X11	XM_047440936.1:c.1534+810=	XM_047440936.1:c.1534+810A>G	XM_047440936.1:c.1534+810A>C
PRDM15 transcript variant X13	XM_047440937.1:c.1594+810=	XM_047440937.1:c.1594+810A>G	XM_047440937.1:c.1594+810A>C
PRDM15 transcript variant X14	XM_047440938.1:c.1432+810=	XM_047440938.1:c.1432+810A>G	XM_047440938.1:c.1432+810A>C
PRDM15 transcript variant X15	XM_047440939.1:c.1534+810=	XM_047440939.1:c.1534+810A>G	XM_047440939.1:c.1534+810A>C
PRDM15 transcript variant X16	XM_047440940.1:c.1432+810=	XM_047440940.1:c.1432+810A>G	XM_047440940.1:c.1432+810A>C

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

62 SubSNP, 19 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	SSAHASNP	ss35270841	May 24, 2005 (125)
2	1000GENOMES	ss112501168	Jan 25, 2009 (130)
3	1000GENOMES	ss113943158	Jan 25, 2009 (130)
4	GMI	ss156943715	Dec 01, 2009 (131)
5	COMPLETE_GENOMICS	ss168102008	Jul 04, 2010 (132)
6	COMPLETE_GENOMICS	ss169602283	Jul 04, 2010 (132)
7	COMPLETE_GENOMICS	ss172068605	Jul 04, 2010 (132)
8	1000GENOMES	ss228583241	Jul 14, 2010 (132)
9	1000GENOMES	ss237995660	Jul 15, 2010 (132)
10	1000GENOMES	ss244131811	Jul 15, 2010 (132)
11	GMI	ss283554667	May 04, 2012 (137)
12	ILLUMINA	ss481171086	May 04, 2012 (137)
13	ILLUMINA	ss484276225	May 04, 2012 (137)
14	TISHKOFF	ss566517748	Apr 25, 2013 (138)
15	SSMP	ss662428491	Apr 25, 2013 (138)
16	ILLUMINA	ss780645127	Aug 21, 2014 (142)
17	ILLUMINA	ss781414480	Aug 21, 2014 (142)
18	ILLUMINA	ss836139697	Aug 21, 2014 (142)
19	EVA-GONL	ss995152188	Aug 21, 2014 (142)
20	JMKIDD_LAB	ss1082525760	Aug 21, 2014 (142)
21	1000GENOMES	ss1366413759	Aug 21, 2014 (142)
22	EVA_GENOME_DK	ss1579676842	Apr 01, 2015 (144)
23	EVA_UK10K_ALSPAC	ss1639630175	Apr 01, 2015 (144)
24	EVA_UK10K_TWINSUK	ss1682624208	Apr 01, 2015 (144)
25	HAMMER_LAB	ss1809702952	Sep 08, 2015 (146)
26	WEILL_CORNELL_DGM	ss1938702573	Feb 12, 2016 (147)
27	GENOMED	ss1969233453	Jul 19, 2016 (147)
28	JJLAB	ss2030125276	Sep 14, 2016 (149)
29	USC_VALOUEV	ss2158730362	Dec 20, 2016 (150)
30	HUMAN_LONGEVITY	ss2246033759	Dec 20, 2016 (150)
31	SYSTEMSBIOZJU	ss2629562248	Nov 08, 2017 (151)
32	ILLUMINA	ss2633853727	Nov 08, 2017 (151)
33	GRF	ss2704462022	Nov 08, 2017 (151)
34	GNOMAD	ss2972141504	Nov 08, 2017 (151)
35	SWEGEN	ss3018944141	Nov 08, 2017 (151)
36	BIOINF_KMB_FNS_UNIBA	ss3028902387	Nov 08, 2017 (151)
37	CSHL	ss3352734834	Nov 08, 2017 (151)
38	ILLUMINA	ss3631807056	Oct 12, 2018 (152)
39	ILLUMINA	ss3642206926	Oct 12, 2018 (152)
40	EGCUT_WGS	ss3685521851	Jul 13, 2019 (153)
41	EVA_DECODE	ss3707797433	Jul 13, 2019 (153)
42	ACPOP	ss3743761361	Jul 13, 2019 (153)
43	EVA	ss3759147850	Jul 13, 2019 (153)
44	KHV_HUMAN_GENOMES	ss3822314418	Jul 13, 2019 (153)
45	EVA	ss3835892331	Apr 27, 2020 (154)
46	SGDP_PRJ	ss3890071591	Apr 27, 2020 (154)
47	KRGDB	ss3940417237	Apr 27, 2020 (154)
48	KOGIC	ss3983156478	Apr 27, 2020 (154)
49	TOPMED	ss5102690056	Apr 27, 2021 (155)
50	TOMMO_GENOMICS	ss5231672947	Apr 27, 2021 (155)
51	1000G_HIGH_COVERAGE	ss5310329726	Oct 16, 2022 (156)
52	EVA	ss5316041327	Oct 16, 2022 (156)
53	HUGCELL_USP	ss5502367680	Oct 16, 2022 (156)
54	EVA	ss5512332557	Oct 16, 2022 (156)
55	1000G_HIGH_COVERAGE	ss5617523792	Oct 16, 2022 (156)
56	SANFORD_IMAGENETICS	ss5664078945	Oct 16, 2022 (156)
57	TOMMO_GENOMICS	ss5792225838	Oct 16, 2022 (156)
58	YY_MCH	ss5818472517	Oct 16, 2022 (156)
59	EVA	ss5839086046	Oct 16, 2022 (156)
60	EVA	ss5853320378	Oct 16, 2022 (156)
61	EVA	ss5892486069	Oct 16, 2022 (156)
62	EVA	ss5958977541	Oct 16, 2022 (156)
63	1000Genomes	NC_000021.8 - 43247712	Oct 12, 2018 (152)
64	1000Genomes_30x	NC_000021.9 - 41827356	Oct 16, 2022 (156)
65	The Avon Longitudinal Study of Parents and Children	NC_000021.8 - 43247712	Oct 12, 2018 (152)
66	Genetic variation in the Estonian population	NC_000021.8 - 43247712	Oct 12, 2018 (152)
67	The Danish reference pan genome	NC_000021.8 - 43247712	Apr 27, 2020 (154)
68	gnomAD - Genomes	NC_000021.9 - 41827356	Apr 27, 2021 (155)
69	Genome of the Netherlands Release 5	NC_000021.8 - 43247712	Apr 27, 2020 (154)
70	KOREAN population from KRGDB	NC_000021.8 - 43247712	Apr 27, 2020 (154)
71	Korean Genome Project	NC_000021.9 - 41827356	Apr 27, 2020 (154)
72	Northern Sweden	NC_000021.8 - 43247712	Jul 13, 2019 (153)
73	Qatari	NC_000021.8 - 43247712	Apr 27, 2020 (154)
74	SGDP_PRJ	NC_000021.8 - 43247712	Apr 27, 2020 (154)
75	Siberian	NC_000021.8 - 43247712	Apr 27, 2020 (154)
76	8.3KJPN	NC_000021.8 - 43247712	Apr 27, 2021 (155)
77	14KJPN	NC_000021.9 - 41827356	Oct 16, 2022 (156)
78	TopMed	NC_000021.9 - 41827356	Apr 27, 2021 (155)
79	UK 10K study - Twins	NC_000021.8 - 43247712	Oct 12, 2018 (152)
80	A Vietnamese Genetic Variation Database	NC_000021.8 - 43247712	Jul 13, 2019 (153)
81	ALFA	NC_000021.9 - 41827356	Apr 27, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
5450064542	NC_000021.9:41827355:T:C	NC_000021.9:41827355:T:C	(self)
ss35270841, ss112501168, ss113943158, ss168102008, ss169602283, ss172068605, ss283554667, ss484276225	NC_000021.7:42120780:T:G	NC_000021.9:41827355:T:G	(self)
79938448, 44244938, 31260099, 5841781, 19709191, 47594631, 17046226, 20744495, 42088571, 11246716, 89642254, 44244938, 9763096, ss228583241, ss237995660, ss244131811, ss481171086, ss566517748, ss662428491, ss780645127, ss781414480, ss836139697, ss995152188, ss1082525760, ss1366413759, ss1579676842, ss1639630175, ss1682624208, ss1809702952, ss1938702573, ss1969233453, ss2030125276, ss2158730362, ss2629562248, ss2633853727, ss2704462022, ss2972141504, ss3018944141, ss3352734834, ss3631807056, ss3642206926, ss3685521851, ss3743761361, ss3759147850, ss3835892331, ss3890071591, ss3940417237, ss5231672947, ss5316041327, ss5512332557, ss5664078945, ss5839086046, ss5958977541	NC_000021.8:43247711:T:G	NC_000021.9:41827355:T:G	(self)
105049727, 564067699, 39534479, 126062942, 377799002, 5450064542, ss2246033759, ss3028902387, ss3707797433, ss3822314418, ss3983156478, ss5102690056, ss5310329726, ss5502367680, ss5617523792, ss5792225838, ss5818472517, ss5853320378, ss5892486069	NC_000021.9:41827355:T:G	NC_000021.9:41827355:T:G	(self)
ss156943715	NT_011515.12:242152:T:G	NC_000021.9:41827355:T:G	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs28539502

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs28539502