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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs2794866

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr1:205019407 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
T>A / T>C / T>G
Variation Type
SNV Single Nucleotide Variation
Frequency
T=0.453183 (119953/264690, TOPMED)
T=0.328931 (79644/242130, ALFA)
T=0.439618 (61616/140158, GnomAD) (+ 19 more)
T=0.23839 (6736/28256, 14KJPN)
T=0.23699 (3972/16760, 8.3KJPN)
T=0.4708 (3015/6404, 1000G_30x)
T=0.4669 (2338/5008, 1000G)
T=0.2779 (1245/4480, Estonian)
T=0.3020 (1164/3854, ALSPAC)
T=0.3039 (1127/3708, TWINSUK)
T=0.2369 (694/2930, KOREAN)
C=0.4630 (876/1892, HapMap)
T=0.2511 (460/1832, Korea1K)
T=0.319 (318/998, GoNL)
T=0.263 (208/790, PRJEB37584)
T=0.208 (125/600, NorthernSweden)
T=0.249 (110/442, SGDP_PRJ)
T=0.500 (108/216, Qatari)
C=0.500 (108/216, Qatari)
T=0.278 (59/212, Vietnamese)
T=0.15 (8/54, Siberian)
T=0.30 (12/40, GENOME_DK)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
NFASC : 3 Prime UTR Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541
Population Group Sample Size Ref Allele Alt Allele
Total Global 242224 T=0.329001 C=0.670999
European Sub 207892 T=0.306265 C=0.693735
African Sub 10840 T=0.76679 C=0.23321
African Others Sub 392 T=0.860 C=0.140
African American Sub 10448 T=0.76330 C=0.23670
Asian Sub 3852 T=0.2692 C=0.7308
East Asian Sub 3092 T=0.2416 C=0.7584
Other Asian Sub 760 T=0.382 C=0.618
Latin American 1 Sub 1184 T=0.4561 C=0.5439
Latin American 2 Sub 8810 T=0.2822 C=0.7178
South Asian Sub 372 T=0.454 C=0.546
Other Sub 9274 T=0.3750 C=0.6250


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 T=0.453183 C=0.546817
Allele Frequency Aggregator Total Global 242130 T=0.328931 C=0.671069
Allele Frequency Aggregator European Sub 207816 T=0.306189 C=0.693811
Allele Frequency Aggregator African Sub 10840 T=0.76679 C=0.23321
Allele Frequency Aggregator Other Sub 9256 T=0.3748 C=0.6252
Allele Frequency Aggregator Latin American 2 Sub 8810 T=0.2822 C=0.7178
Allele Frequency Aggregator Asian Sub 3852 T=0.2692 C=0.7308
Allele Frequency Aggregator Latin American 1 Sub 1184 T=0.4561 C=0.5439
Allele Frequency Aggregator South Asian Sub 372 T=0.454 C=0.546
gnomAD - Genomes Global Study-wide 140158 T=0.439618 C=0.560382
gnomAD - Genomes European Sub 75910 T=0.28654 C=0.71346
gnomAD - Genomes African Sub 41998 T=0.76385 C=0.23615
gnomAD - Genomes American Sub 13650 T=0.34110 C=0.65890
gnomAD - Genomes Ashkenazi Jewish Sub 3324 T=0.4176 C=0.5824
gnomAD - Genomes East Asian Sub 3124 T=0.2622 C=0.7378
gnomAD - Genomes Other Sub 2152 T=0.4284 C=0.5716
14KJPN JAPANESE Study-wide 28256 T=0.23839 C=0.76161
8.3KJPN JAPANESE Study-wide 16760 T=0.23699 C=0.76301
1000Genomes_30x Global Study-wide 6404 T=0.4708 C=0.5292
1000Genomes_30x African Sub 1786 T=0.8438 C=0.1562
1000Genomes_30x Europe Sub 1266 T=0.2820 C=0.7180
1000Genomes_30x South Asian Sub 1202 T=0.4642 C=0.5358
1000Genomes_30x East Asian Sub 1170 T=0.2453 C=0.7547
1000Genomes_30x American Sub 980 T=0.312 C=0.688
1000Genomes Global Study-wide 5008 T=0.4669 C=0.5331
1000Genomes African Sub 1322 T=0.8434 C=0.1566
1000Genomes East Asian Sub 1008 T=0.2490 C=0.7510
1000Genomes Europe Sub 1006 T=0.2893 C=0.7107
1000Genomes South Asian Sub 978 T=0.468 C=0.532
1000Genomes American Sub 694 T=0.321 C=0.679
Genetic variation in the Estonian population Estonian Study-wide 4480 T=0.2779 C=0.7221
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 T=0.3020 C=0.6980
UK 10K study - Twins TWIN COHORT Study-wide 3708 T=0.3039 C=0.6961
KOREAN population from KRGDB KOREAN Study-wide 2930 T=0.2369 A=0.0000, C=0.7631, G=0.0000
HapMap Global Study-wide 1892 T=0.5370 C=0.4630
HapMap American Sub 770 T=0.364 C=0.636
HapMap African Sub 692 T=0.879 C=0.121
HapMap Asian Sub 254 T=0.264 C=0.736
HapMap Europe Sub 176 T=0.347 C=0.653
Korean Genome Project KOREAN Study-wide 1832 T=0.2511 C=0.7489
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 T=0.319 C=0.681
CNV burdens in cranial meningiomas Global Study-wide 790 T=0.263 C=0.737
CNV burdens in cranial meningiomas CRM Sub 790 T=0.263 C=0.737
Northern Sweden ACPOP Study-wide 600 T=0.208 C=0.792
SGDP_PRJ Global Study-wide 442 T=0.249 C=0.751
Qatari Global Study-wide 216 T=0.500 C=0.500
A Vietnamese Genetic Variation Database Global Study-wide 212 T=0.278 C=0.722
Siberian Global Study-wide 54 T=0.15 C=0.85
The Danish reference pan genome Danish Study-wide 40 T=0.30 C=0.70
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 1 NC_000001.11:g.205019407T>A
GRCh38.p14 chr 1 NC_000001.11:g.205019407T>C
GRCh38.p14 chr 1 NC_000001.11:g.205019407T>G
GRCh37.p13 chr 1 NC_000001.10:g.204988535T>A
GRCh37.p13 chr 1 NC_000001.10:g.204988535T>C
GRCh37.p13 chr 1 NC_000001.10:g.204988535T>G
NFASC RefSeqGene NG_029938.1:g.195754T>A
NFASC RefSeqGene NG_029938.1:g.195754T>C
NFASC RefSeqGene NG_029938.1:g.195754T>G
Gene: NFASC, neurofascin (plus strand)
Molecule type Change Amino acid[Codon] SO Term
NFASC transcript variant 7 NM_001365986.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant 3 NM_001160332.2:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant 4 NM_015090.4:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant 1 NM_001005388.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant 8 NM_001378329.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant 2 NM_001160331.2:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant 5 NM_001005389.2:c. N/A Genic Downstream Transcript Variant
NFASC transcript variant 6 NM_001160333.2:c. N/A Genic Downstream Transcript Variant
NFASC transcript variant 9 NM_001378330.1:c. N/A Genic Downstream Transcript Variant
NFASC transcript variant 10 NM_001378331.1:c. N/A Genic Downstream Transcript Variant
NFASC transcript variant 11 NR_165492.1:n. N/A Genic Downstream Transcript Variant
NFASC transcript variant X2 XM_011509312.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X6 XM_011509314.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X25 XM_005244989.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X28 XM_005244991.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X30 XM_005244993.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X5 XM_017000733.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X8 XM_017000734.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X10 XM_011509318.2:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X11 XM_011509320.2:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X1 XM_011509311.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X3 XM_024454285.2:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X4 XM_024454288.2:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X7 XM_024454292.2:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X9 XM_011509316.2:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X12 XM_011509321.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X13 XM_011509322.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X14 XM_011509323.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X15 XM_047449933.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X16 XM_024454296.2:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X17 XM_047449946.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X18 XM_047449947.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X19 XM_047449948.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X20 XM_047449950.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X21 XM_047449955.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X22 XM_024454297.2:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X23 XM_047449961.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X24 XM_011509325.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X26 XM_047449964.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X27 XM_047449967.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X29 XM_005244992.5:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X31 XM_047449979.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X32 XM_024454300.2:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X33 XM_011509326.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X34 XM_011509327.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X35 XM_047449982.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X36 XM_047449989.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X37 XM_047449990.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X38 XM_047449991.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X39 XM_047449996.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X40 XM_047450000.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X41 XM_047450001.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X42 XM_047450009.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X43 XM_047450017.1:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X45 XM_011509328.3:c.*2868= N/A 3 Prime UTR Variant
NFASC transcript variant X44 XM_047450027.1:c. N/A Genic Downstream Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement T= A C G
GRCh38.p14 chr 1 NC_000001.11:g.205019407= NC_000001.11:g.205019407T>A NC_000001.11:g.205019407T>C NC_000001.11:g.205019407T>G
GRCh37.p13 chr 1 NC_000001.10:g.204988535= NC_000001.10:g.204988535T>A NC_000001.10:g.204988535T>C NC_000001.10:g.204988535T>G
NFASC RefSeqGene NG_029938.1:g.195754= NG_029938.1:g.195754T>A NG_029938.1:g.195754T>C NG_029938.1:g.195754T>G
NFASC transcript variant 4 NM_015090.4:c.*2868= NM_015090.4:c.*2868T>A NM_015090.4:c.*2868T>C NM_015090.4:c.*2868T>G
NFASC transcript variant 4 NM_015090.3:c.*2868= NM_015090.3:c.*2868T>A NM_015090.3:c.*2868T>C NM_015090.3:c.*2868T>G
NFASC transcript variant 1 NM_001005388.3:c.*2868= NM_001005388.3:c.*2868T>A NM_001005388.3:c.*2868T>C NM_001005388.3:c.*2868T>G
NFASC transcript variant 1 NM_001005388.2:c.*2868= NM_001005388.2:c.*2868T>A NM_001005388.2:c.*2868T>C NM_001005388.2:c.*2868T>G
NFASC transcript variant 2 NM_001160331.2:c.*2868= NM_001160331.2:c.*2868T>A NM_001160331.2:c.*2868T>C NM_001160331.2:c.*2868T>G
NFASC transcript variant 2 NM_001160331.1:c.*2868= NM_001160331.1:c.*2868T>A NM_001160331.1:c.*2868T>C NM_001160331.1:c.*2868T>G
NFASC transcript variant 3 NM_001160332.2:c.*2868= NM_001160332.2:c.*2868T>A NM_001160332.2:c.*2868T>C NM_001160332.2:c.*2868T>G
NFASC transcript variant 3 NM_001160332.1:c.*2868= NM_001160332.1:c.*2868T>A NM_001160332.1:c.*2868T>C NM_001160332.1:c.*2868T>G
NFASC transcript variant 8 NM_001378329.1:c.*2868= NM_001378329.1:c.*2868T>A NM_001378329.1:c.*2868T>C NM_001378329.1:c.*2868T>G
NFASC transcript variant 7 NM_001365986.1:c.*2868= NM_001365986.1:c.*2868T>A NM_001365986.1:c.*2868T>C NM_001365986.1:c.*2868T>G
NFASC transcript variant X29 XM_005244992.5:c.*2868= XM_005244992.5:c.*2868T>A XM_005244992.5:c.*2868T>C XM_005244992.5:c.*2868T>G
NFASC transcript variant X23 XM_005244992.4:c.*2868= XM_005244992.4:c.*2868T>A XM_005244992.4:c.*2868T>C XM_005244992.4:c.*2868T>G
NFASC transcript variant X18 XM_005244992.3:c.*2868= XM_005244992.3:c.*2868T>A XM_005244992.3:c.*2868T>C XM_005244992.3:c.*2868T>G
NFASC transcript variant X20 XM_005244992.2:c.*2868= XM_005244992.2:c.*2868T>A XM_005244992.2:c.*2868T>C XM_005244992.2:c.*2868T>G
NFASC transcript variant X20 XM_005244992.1:c.*2868= XM_005244992.1:c.*2868T>A XM_005244992.1:c.*2868T>C XM_005244992.1:c.*2868T>G
NFASC transcript variant X1 XM_011509311.3:c.*2868= XM_011509311.3:c.*2868T>A XM_011509311.3:c.*2868T>C XM_011509311.3:c.*2868T>G
NFASC transcript variant X2 XM_011509311.2:c.*2868= XM_011509311.2:c.*2868T>A XM_011509311.2:c.*2868T>C XM_011509311.2:c.*2868T>G
NFASC transcript variant X1 XM_011509311.1:c.*2868= XM_011509311.1:c.*2868T>A XM_011509311.1:c.*2868T>C XM_011509311.1:c.*2868T>G
NFASC transcript variant X12 XM_011509321.3:c.*2868= XM_011509321.3:c.*2868T>A XM_011509321.3:c.*2868T>C XM_011509321.3:c.*2868T>G
NFASC transcript variant X14 XM_011509321.2:c.*2868= XM_011509321.2:c.*2868T>A XM_011509321.2:c.*2868T>C XM_011509321.2:c.*2868T>G
NFASC transcript variant X13 XM_011509321.1:c.*2868= XM_011509321.1:c.*2868T>A XM_011509321.1:c.*2868T>C XM_011509321.1:c.*2868T>G
NFASC transcript variant X13 XM_011509322.3:c.*2868= XM_011509322.3:c.*2868T>A XM_011509322.3:c.*2868T>C XM_011509322.3:c.*2868T>G
NFASC transcript variant X15 XM_011509322.2:c.*2868= XM_011509322.2:c.*2868T>A XM_011509322.2:c.*2868T>C XM_011509322.2:c.*2868T>G
NFASC transcript variant X15 XM_011509322.1:c.*2868= XM_011509322.1:c.*2868T>A XM_011509322.1:c.*2868T>C XM_011509322.1:c.*2868T>G
NFASC transcript variant X14 XM_011509323.3:c.*2868= XM_011509323.3:c.*2868T>A XM_011509323.3:c.*2868T>C XM_011509323.3:c.*2868T>G
NFASC transcript variant X16 XM_011509323.2:c.*2868= XM_011509323.2:c.*2868T>A XM_011509323.2:c.*2868T>C XM_011509323.2:c.*2868T>G
NFASC transcript variant X16 XM_011509323.1:c.*2868= XM_011509323.1:c.*2868T>A XM_011509323.1:c.*2868T>C XM_011509323.1:c.*2868T>G
NFASC transcript variant X24 XM_011509325.3:c.*2868= XM_011509325.3:c.*2868T>A XM_011509325.3:c.*2868T>C XM_011509325.3:c.*2868T>G
NFASC transcript variant X19 XM_011509325.2:c.*2868= XM_011509325.2:c.*2868T>A XM_011509325.2:c.*2868T>C XM_011509325.2:c.*2868T>G
NFASC transcript variant X18 XM_011509325.1:c.*2868= XM_011509325.1:c.*2868T>A XM_011509325.1:c.*2868T>C XM_011509325.1:c.*2868T>G
NFASC transcript variant X25 XM_005244989.3:c.*2868= XM_005244989.3:c.*2868T>A XM_005244989.3:c.*2868T>C XM_005244989.3:c.*2868T>G
NFASC transcript variant X17 XM_005244989.2:c.*2868= XM_005244989.2:c.*2868T>A XM_005244989.2:c.*2868T>C XM_005244989.2:c.*2868T>G
NFASC transcript variant X17 XM_005244989.1:c.*2868= XM_005244989.1:c.*2868T>A XM_005244989.1:c.*2868T>C XM_005244989.1:c.*2868T>G
NFASC transcript variant X28 XM_005244991.3:c.*2868= XM_005244991.3:c.*2868T>A XM_005244991.3:c.*2868T>C XM_005244991.3:c.*2868T>G
NFASC transcript variant X19 XM_005244991.2:c.*2868= XM_005244991.2:c.*2868T>A XM_005244991.2:c.*2868T>C XM_005244991.2:c.*2868T>G
NFASC transcript variant X19 XM_005244991.1:c.*2868= XM_005244991.1:c.*2868T>A XM_005244991.1:c.*2868T>C XM_005244991.1:c.*2868T>G
NFASC transcript variant X30 XM_005244993.3:c.*2868= XM_005244993.3:c.*2868T>A XM_005244993.3:c.*2868T>C XM_005244993.3:c.*2868T>G
NFASC transcript variant X21 XM_005244993.2:c.*2868= XM_005244993.2:c.*2868T>A XM_005244993.2:c.*2868T>C XM_005244993.2:c.*2868T>G
NFASC transcript variant X21 XM_005244993.1:c.*2868= XM_005244993.1:c.*2868T>A XM_005244993.1:c.*2868T>C XM_005244993.1:c.*2868T>G
NFASC transcript variant X33 XM_011509326.3:c.*2868= XM_011509326.3:c.*2868T>A XM_011509326.3:c.*2868T>C XM_011509326.3:c.*2868T>G
NFASC transcript variant X28 XM_011509326.2:c.*2868= XM_011509326.2:c.*2868T>A XM_011509326.2:c.*2868T>C XM_011509326.2:c.*2868T>G
NFASC transcript variant X28 XM_011509326.1:c.*2868= XM_011509326.1:c.*2868T>A XM_011509326.1:c.*2868T>C XM_011509326.1:c.*2868T>G
NFASC transcript variant X34 XM_011509327.3:c.*2868= XM_011509327.3:c.*2868T>A XM_011509327.3:c.*2868T>C XM_011509327.3:c.*2868T>G
NFASC transcript variant X29 XM_011509327.2:c.*2868= XM_011509327.2:c.*2868T>A XM_011509327.2:c.*2868T>C XM_011509327.2:c.*2868T>G
NFASC transcript variant X29 XM_011509327.1:c.*2868= XM_011509327.1:c.*2868T>A XM_011509327.1:c.*2868T>C XM_011509327.1:c.*2868T>G
NFASC transcript variant X45 XM_011509328.3:c.*2868= XM_011509328.3:c.*2868T>A XM_011509328.3:c.*2868T>C XM_011509328.3:c.*2868T>G
NFASC transcript variant X37 XM_011509328.2:c.*2868= XM_011509328.2:c.*2868T>A XM_011509328.2:c.*2868T>C XM_011509328.2:c.*2868T>G
NFASC transcript variant X35 XM_011509328.1:c.*2868= XM_011509328.1:c.*2868T>A XM_011509328.1:c.*2868T>C XM_011509328.1:c.*2868T>G
NFASC transcript variant X3 XM_024454285.2:c.*2868= XM_024454285.2:c.*2868T>A XM_024454285.2:c.*2868T>C XM_024454285.2:c.*2868T>G
NFASC transcript variant X4 XM_024454285.1:c.*2868= XM_024454285.1:c.*2868T>A XM_024454285.1:c.*2868T>C XM_024454285.1:c.*2868T>G
NFASC transcript variant X4 XM_024454288.2:c.*2868= XM_024454288.2:c.*2868T>A XM_024454288.2:c.*2868T>C XM_024454288.2:c.*2868T>G
NFASC transcript variant X5 XM_024454288.1:c.*2868= XM_024454288.1:c.*2868T>A XM_024454288.1:c.*2868T>C XM_024454288.1:c.*2868T>G
NFASC transcript variant X9 XM_011509316.2:c.*2868= XM_011509316.2:c.*2868T>A XM_011509316.2:c.*2868T>C XM_011509316.2:c.*2868T>G
NFASC transcript variant X10 XM_011509316.1:c.*2868= XM_011509316.1:c.*2868T>A XM_011509316.1:c.*2868T>C XM_011509316.1:c.*2868T>G
NFASC transcript variant X7 XM_024454292.2:c.*2868= XM_024454292.2:c.*2868T>A XM_024454292.2:c.*2868T>C XM_024454292.2:c.*2868T>G
NFASC transcript variant X8 XM_024454292.1:c.*2868= XM_024454292.1:c.*2868T>A XM_024454292.1:c.*2868T>C XM_024454292.1:c.*2868T>G
NFASC transcript variant X10 XM_011509318.2:c.*2868= XM_011509318.2:c.*2868T>A XM_011509318.2:c.*2868T>C XM_011509318.2:c.*2868T>G
NFASC transcript variant X8 XM_011509318.1:c.*2868= XM_011509318.1:c.*2868T>A XM_011509318.1:c.*2868T>C XM_011509318.1:c.*2868T>G
NFASC transcript variant X11 XM_011509320.2:c.*2868= XM_011509320.2:c.*2868T>A XM_011509320.2:c.*2868T>C XM_011509320.2:c.*2868T>G
NFASC transcript variant X10 XM_011509320.1:c.*2868= XM_011509320.1:c.*2868T>A XM_011509320.1:c.*2868T>C XM_011509320.1:c.*2868T>G
NFASC transcript variant X16 XM_024454296.2:c.*2868= XM_024454296.2:c.*2868T>A XM_024454296.2:c.*2868T>C XM_024454296.2:c.*2868T>G
NFASC transcript variant X17 XM_024454296.1:c.*2868= XM_024454296.1:c.*2868T>A XM_024454296.1:c.*2868T>C XM_024454296.1:c.*2868T>G
NFASC transcript variant X22 XM_024454297.2:c.*2868= XM_024454297.2:c.*2868T>A XM_024454297.2:c.*2868T>C XM_024454297.2:c.*2868T>G
NFASC transcript variant X18 XM_024454297.1:c.*2868= XM_024454297.1:c.*2868T>A XM_024454297.1:c.*2868T>C XM_024454297.1:c.*2868T>G
NFASC transcript variant X32 XM_024454300.2:c.*2868= XM_024454300.2:c.*2868T>A XM_024454300.2:c.*2868T>C XM_024454300.2:c.*2868T>G
NFASC transcript variant X27 XM_024454300.1:c.*2868= XM_024454300.1:c.*2868T>A XM_024454300.1:c.*2868T>C XM_024454300.1:c.*2868T>G
NFASC transcript variant X2 XM_011509312.1:c.*2868= XM_011509312.1:c.*2868T>A XM_011509312.1:c.*2868T>C XM_011509312.1:c.*2868T>G
NFASC transcript variant X20 XM_047449950.1:c.*2868= XM_047449950.1:c.*2868T>A XM_047449950.1:c.*2868T>C XM_047449950.1:c.*2868T>G
NFASC transcript variant X18 XM_047449947.1:c.*2868= XM_047449947.1:c.*2868T>A XM_047449947.1:c.*2868T>C XM_047449947.1:c.*2868T>G
NFASC transcript variant X5 XM_017000733.1:c.*2868= XM_017000733.1:c.*2868T>A XM_017000733.1:c.*2868T>C XM_017000733.1:c.*2868T>G
NFASC transcript variant X6 XM_011509314.1:c.*2868= XM_011509314.1:c.*2868T>A XM_011509314.1:c.*2868T>C XM_011509314.1:c.*2868T>G
NFASC transcript variant X8 XM_017000734.1:c.*2868= XM_017000734.1:c.*2868T>A XM_017000734.1:c.*2868T>C XM_017000734.1:c.*2868T>G
NFASC transcript variant X19 XM_047449948.1:c.*2868= XM_047449948.1:c.*2868T>A XM_047449948.1:c.*2868T>C XM_047449948.1:c.*2868T>G
NFASC transcript variant X21 XM_047449955.1:c.*2868= XM_047449955.1:c.*2868T>A XM_047449955.1:c.*2868T>C XM_047449955.1:c.*2868T>G
NFASC transcript variant X23 XM_047449961.1:c.*2868= XM_047449961.1:c.*2868T>A XM_047449961.1:c.*2868T>C XM_047449961.1:c.*2868T>G
NFASC transcript variant X15 XM_047449933.1:c.*2868= XM_047449933.1:c.*2868T>A XM_047449933.1:c.*2868T>C XM_047449933.1:c.*2868T>G
NFASC transcript variant X17 XM_047449946.1:c.*2868= XM_047449946.1:c.*2868T>A XM_047449946.1:c.*2868T>C XM_047449946.1:c.*2868T>G
NFASC transcript variant X26 XM_047449964.1:c.*2868= XM_047449964.1:c.*2868T>A XM_047449964.1:c.*2868T>C XM_047449964.1:c.*2868T>G
NFASC transcript variant X27 XM_047449967.1:c.*2868= XM_047449967.1:c.*2868T>A XM_047449967.1:c.*2868T>C XM_047449967.1:c.*2868T>G
NFASC transcript variant X31 XM_047449979.1:c.*2868= XM_047449979.1:c.*2868T>A XM_047449979.1:c.*2868T>C XM_047449979.1:c.*2868T>G
NFASC transcript variant X35 XM_047449982.1:c.*2868= XM_047449982.1:c.*2868T>A XM_047449982.1:c.*2868T>C XM_047449982.1:c.*2868T>G
NFASC transcript variant X36 XM_047449989.1:c.*2868= XM_047449989.1:c.*2868T>A XM_047449989.1:c.*2868T>C XM_047449989.1:c.*2868T>G
NFASC transcript variant X37 XM_047449990.1:c.*2868= XM_047449990.1:c.*2868T>A XM_047449990.1:c.*2868T>C XM_047449990.1:c.*2868T>G
NFASC transcript variant X38 XM_047449991.1:c.*2868= XM_047449991.1:c.*2868T>A XM_047449991.1:c.*2868T>C XM_047449991.1:c.*2868T>G
NFASC transcript variant X39 XM_047449996.1:c.*2868= XM_047449996.1:c.*2868T>A XM_047449996.1:c.*2868T>C XM_047449996.1:c.*2868T>G
NFASC transcript variant X40 XM_047450000.1:c.*2868= XM_047450000.1:c.*2868T>A XM_047450000.1:c.*2868T>C XM_047450000.1:c.*2868T>G
NFASC transcript variant X41 XM_047450001.1:c.*2868= XM_047450001.1:c.*2868T>A XM_047450001.1:c.*2868T>C XM_047450001.1:c.*2868T>G
NFASC transcript variant X42 XM_047450009.1:c.*2868= XM_047450009.1:c.*2868T>A XM_047450009.1:c.*2868T>C XM_047450009.1:c.*2868T>G
NFASC transcript variant X43 XM_047450017.1:c.*2868= XM_047450017.1:c.*2868T>A XM_047450017.1:c.*2868T>C XM_047450017.1:c.*2868T>G
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

128 SubSNP, 21 Frequency submissions
No Submitter Submission ID Date (Build)
1 SC_JCM ss3957712 Sep 28, 2001 (100)
2 PERLEGEN ss23700953 Sep 20, 2004 (123)
3 ABI ss44103362 Mar 15, 2006 (126)
4 AFFY ss66203033 Dec 01, 2006 (127)
5 PERLEGEN ss68790260 May 18, 2007 (127)
6 ILLUMINA ss75125699 Dec 06, 2007 (129)
7 AFFY ss76292797 Dec 08, 2007 (130)
8 HGSV ss78104273 Dec 06, 2007 (129)
9 HGSV ss81635034 Dec 16, 2007 (130)
10 KRIBB_YJKIM ss81869748 Dec 15, 2007 (130)
11 BCMHGSC_JDW ss87944213 Mar 23, 2008 (129)
12 HUMANGENOME_JCVI ss97998688 Feb 06, 2009 (130)
13 BGI ss106626752 Feb 06, 2009 (130)
14 1000GENOMES ss108886710 Jan 23, 2009 (130)
15 ENSEMBL ss138140965 Dec 01, 2009 (131)
16 ENSEMBL ss139093447 Dec 01, 2009 (131)
17 GMI ss156192169 Dec 01, 2009 (131)
18 ILLUMINA ss160579413 Dec 01, 2009 (131)
19 COMPLETE_GENOMICS ss165714106 Jul 04, 2010 (132)
20 COMPLETE_GENOMICS ss167450271 Jul 04, 2010 (132)
21 AFFY ss173151086 Jul 04, 2010 (132)
22 ILLUMINA ss173464527 Jul 04, 2010 (132)
23 BCM-HGSC-SUB ss205293951 Jul 04, 2010 (132)
24 1000GENOMES ss218839671 Jul 14, 2010 (132)
25 1000GENOMES ss230869528 Jul 14, 2010 (132)
26 1000GENOMES ss238488432 Jul 15, 2010 (132)
27 GMI ss276186059 May 04, 2012 (137)
28 GMI ss284214243 Apr 25, 2013 (138)
29 PJP ss290717848 May 09, 2011 (134)
30 ILLUMINA ss480664409 May 04, 2012 (137)
31 ILLUMINA ss480679879 May 04, 2012 (137)
32 ILLUMINA ss481531730 Sep 08, 2015 (146)
33 ILLUMINA ss485127120 May 04, 2012 (137)
34 ILLUMINA ss537127029 Sep 08, 2015 (146)
35 TISHKOFF ss555074445 Apr 25, 2013 (138)
36 SSMP ss648644734 Apr 25, 2013 (138)
37 ILLUMINA ss778506453 Sep 08, 2015 (146)
38 ILLUMINA ss783009892 Sep 08, 2015 (146)
39 ILLUMINA ss783970174 Sep 08, 2015 (146)
40 ILLUMINA ss832267217 Sep 08, 2015 (146)
41 ILLUMINA ss833962642 Sep 08, 2015 (146)
42 EVA-GONL ss976058307 Aug 21, 2014 (142)
43 JMKIDD_LAB ss1068538594 Aug 21, 2014 (142)
44 1000GENOMES ss1294327565 Aug 21, 2014 (142)
45 DDI ss1426087480 Apr 01, 2015 (144)
46 EVA_GENOME_DK ss1574622409 Apr 01, 2015 (144)
47 EVA_DECODE ss1585453589 Apr 01, 2015 (144)
48 EVA_UK10K_ALSPAC ss1601965885 Apr 01, 2015 (144)
49 EVA_UK10K_TWINSUK ss1644959918 Apr 01, 2015 (144)
50 EVA_SVP ss1712398348 Apr 01, 2015 (144)
51 ILLUMINA ss1751893489 Sep 08, 2015 (146)
52 HAMMER_LAB ss1795615911 Sep 08, 2015 (146)
53 WEILL_CORNELL_DGM ss1919284906 Feb 12, 2016 (147)
54 ILLUMINA ss1946020784 Feb 12, 2016 (147)
55 GENOMED ss1966953005 Jul 19, 2016 (147)
56 JJLAB ss2020163099 Sep 14, 2016 (149)
57 ILLUMINA ss2094995655 Dec 20, 2016 (150)
58 USC_VALOUEV ss2148192509 Dec 20, 2016 (150)
59 HUMAN_LONGEVITY ss2169429445 Dec 20, 2016 (150)
60 SYSTEMSBIOZJU ss2624590294 Nov 08, 2017 (151)
61 ILLUMINA ss2632618804 Nov 08, 2017 (151)
62 GRF ss2698183209 Nov 08, 2017 (151)
63 ILLUMINA ss2710691747 Nov 08, 2017 (151)
64 GNOMAD ss2765306003 Nov 08, 2017 (151)
65 AFFY ss2984891584 Nov 08, 2017 (151)
66 AFFY ss2985536214 Nov 08, 2017 (151)
67 SWEGEN ss2988317357 Nov 08, 2017 (151)
68 ILLUMINA ss3021171631 Nov 08, 2017 (151)
69 BIOINF_KMB_FNS_UNIBA ss3023841606 Nov 08, 2017 (151)
70 CSHL ss3343874125 Nov 08, 2017 (151)
71 ILLUMINA ss3625559201 Oct 11, 2018 (152)
72 ILLUMINA ss3626288920 Oct 11, 2018 (152)
73 ILLUMINA ss3630649167 Oct 11, 2018 (152)
74 ILLUMINA ss3632922398 Oct 11, 2018 (152)
75 ILLUMINA ss3633618300 Oct 11, 2018 (152)
76 ILLUMINA ss3634368507 Oct 11, 2018 (152)
77 ILLUMINA ss3636047477 Oct 11, 2018 (152)
78 ILLUMINA ss3637062000 Oct 11, 2018 (152)
79 ILLUMINA ss3637808781 Oct 11, 2018 (152)
80 ILLUMINA ss3640075861 Oct 11, 2018 (152)
81 ILLUMINA ss3640990949 Oct 11, 2018 (152)
82 ILLUMINA ss3641285045 Oct 11, 2018 (152)
83 ILLUMINA ss3642815799 Oct 11, 2018 (152)
84 ILLUMINA ss3644516782 Oct 11, 2018 (152)
85 OMUKHERJEE_ADBS ss3646251871 Oct 11, 2018 (152)
86 URBANLAB ss3646869034 Oct 11, 2018 (152)
87 ILLUMINA ss3651514592 Oct 11, 2018 (152)
88 ILLUMINA ss3653661252 Oct 11, 2018 (152)
89 EGCUT_WGS ss3656277525 Jul 12, 2019 (153)
90 EVA_DECODE ss3688470437 Jul 12, 2019 (153)
91 ILLUMINA ss3725097891 Jul 12, 2019 (153)
92 ACPOP ss3727791210 Jul 12, 2019 (153)
93 ILLUMINA ss3744059365 Jul 12, 2019 (153)
94 ILLUMINA ss3744669344 Jul 12, 2019 (153)
95 EVA ss3747235229 Jul 12, 2019 (153)
96 ILLUMINA ss3772170312 Jul 12, 2019 (153)
97 PACBIO ss3783666287 Jul 12, 2019 (153)
98 PACBIO ss3789282070 Jul 12, 2019 (153)
99 PACBIO ss3794154334 Jul 12, 2019 (153)
100 KHV_HUMAN_GENOMES ss3800242125 Jul 12, 2019 (153)
101 EVA ss3825585945 Apr 25, 2020 (154)
102 EVA ss3826602609 Apr 25, 2020 (154)
103 EVA ss3836701655 Apr 25, 2020 (154)
104 EVA ss3842112860 Apr 25, 2020 (154)
105 SGDP_PRJ ss3850731223 Apr 25, 2020 (154)
106 KRGDB ss3896026963 Apr 25, 2020 (154)
107 KOGIC ss3946330462 Apr 25, 2020 (154)
108 FSA-LAB ss3983960378 Apr 27, 2021 (155)
109 EVA ss3984470535 Apr 27, 2021 (155)
110 EVA ss3986015016 Apr 27, 2021 (155)
111 EVA ss4016957333 Apr 27, 2021 (155)
112 TOPMED ss4480732772 Apr 27, 2021 (155)
113 TOMMO_GENOMICS ss5148066748 Apr 27, 2021 (155)
114 1000G_HIGH_COVERAGE ss5245514703 Oct 17, 2022 (156)
115 EVA ss5314675975 Oct 17, 2022 (156)
116 EVA ss5324274480 Oct 17, 2022 (156)
117 HUGCELL_USP ss5445981025 Oct 17, 2022 (156)
118 EVA ss5506160436 Oct 17, 2022 (156)
119 1000G_HIGH_COVERAGE ss5519469303 Oct 17, 2022 (156)
120 SANFORD_IMAGENETICS ss5627288133 Oct 17, 2022 (156)
121 TOMMO_GENOMICS ss5675721206 Oct 17, 2022 (156)
122 EVA ss5799509084 Oct 17, 2022 (156)
123 YY_MCH ss5801566939 Oct 17, 2022 (156)
124 EVA ss5833149516 Oct 17, 2022 (156)
125 EVA ss5847570557 Oct 17, 2022 (156)
126 EVA ss5849250040 Oct 17, 2022 (156)
127 EVA ss5911648902 Oct 17, 2022 (156)
128 EVA ss5939119065 Oct 17, 2022 (156)
129 1000Genomes NC_000001.10 - 204988535 Oct 11, 2018 (152)
130 1000Genomes_30x NC_000001.11 - 205019407 Oct 17, 2022 (156)
131 The Avon Longitudinal Study of Parents and Children NC_000001.10 - 204988535 Oct 11, 2018 (152)
132 Genetic variation in the Estonian population NC_000001.10 - 204988535 Oct 11, 2018 (152)
133 The Danish reference pan genome NC_000001.10 - 204988535 Apr 25, 2020 (154)
134 gnomAD - Genomes NC_000001.11 - 205019407 Apr 27, 2021 (155)
135 Genome of the Netherlands Release 5 NC_000001.10 - 204988535 Apr 25, 2020 (154)
136 HapMap NC_000001.11 - 205019407 Apr 25, 2020 (154)
137 KOREAN population from KRGDB NC_000001.10 - 204988535 Apr 25, 2020 (154)
138 Korean Genome Project NC_000001.11 - 205019407 Apr 25, 2020 (154)
139 Northern Sweden NC_000001.10 - 204988535 Jul 12, 2019 (153)
140 CNV burdens in cranial meningiomas NC_000001.10 - 204988535 Apr 27, 2021 (155)
141 Qatari NC_000001.10 - 204988535 Apr 25, 2020 (154)
142 SGDP_PRJ NC_000001.10 - 204988535 Apr 25, 2020 (154)
143 Siberian NC_000001.10 - 204988535 Apr 25, 2020 (154)
144 8.3KJPN NC_000001.10 - 204988535 Apr 27, 2021 (155)
145 14KJPN NC_000001.11 - 205019407 Oct 17, 2022 (156)
146 TopMed NC_000001.11 - 205019407 Apr 27, 2021 (155)
147 UK 10K study - Twins NC_000001.10 - 204988535 Oct 11, 2018 (152)
148 A Vietnamese Genetic Variation Database NC_000001.10 - 204988535 Jul 12, 2019 (153)
149 ALFA NC_000001.11 - 205019407 Apr 27, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs16854947 Oct 07, 2004 (123)
rs56600098 May 26, 2008 (130)
rs59936948 Feb 27, 2009 (130)
rs61371266 May 26, 2008 (130)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
3204357, ss3896026963 NC_000001.10:204988534:T:A NC_000001.11:205019406:T:A (self)
ss78104273, ss81635034 NC_000001.8:201720191:T:C NC_000001.11:205019406:T:C (self)
ss87944213, ss108886710, ss165714106, ss167450271, ss205293951, ss276186059, ss284214243, ss290717848, ss480664409, ss1585453589, ss1712398348, ss3642815799 NC_000001.9:203255157:T:C NC_000001.11:205019406:T:C (self)
5170716, 2847814, 2015773, 1851408, 1243657, 3204357, 1076075, 19853, 1326836, 2748203, 708863, 6036055, 2847814, 615256, ss218839671, ss230869528, ss238488432, ss480679879, ss481531730, ss485127120, ss537127029, ss555074445, ss648644734, ss778506453, ss783009892, ss783970174, ss832267217, ss833962642, ss976058307, ss1068538594, ss1294327565, ss1426087480, ss1574622409, ss1601965885, ss1644959918, ss1751893489, ss1795615911, ss1919284906, ss1946020784, ss1966953005, ss2020163099, ss2094995655, ss2148192509, ss2624590294, ss2632618804, ss2698183209, ss2710691747, ss2765306003, ss2984891584, ss2985536214, ss2988317357, ss3021171631, ss3343874125, ss3625559201, ss3626288920, ss3630649167, ss3632922398, ss3633618300, ss3634368507, ss3636047477, ss3637062000, ss3637808781, ss3640075861, ss3640990949, ss3641285045, ss3644516782, ss3646251871, ss3651514592, ss3653661252, ss3656277525, ss3727791210, ss3744059365, ss3744669344, ss3747235229, ss3772170312, ss3783666287, ss3789282070, ss3794154334, ss3825585945, ss3826602609, ss3836701655, ss3850731223, ss3896026963, ss3983960378, ss3984470535, ss3986015016, ss4016957333, ss5148066748, ss5314675975, ss5324274480, ss5506160436, ss5627288133, ss5799509084, ss5833149516, ss5847570557, ss5939119065 NC_000001.10:204988534:T:C NC_000001.11:205019406:T:C (self)
6995238, 37247698, 250048, 2708463, 9558310, 44339107, 13163156028, ss2169429445, ss3023841606, ss3646869034, ss3688470437, ss3725097891, ss3800242125, ss3842112860, ss3946330462, ss4480732772, ss5245514703, ss5445981025, ss5519469303, ss5675721206, ss5801566939, ss5849250040, ss5911648902 NC_000001.11:205019406:T:C NC_000001.11:205019406:T:C (self)
ss3957712, ss23700953, ss44103362, ss66203033, ss68790260, ss75125699, ss76292797, ss81869748, ss97998688, ss106626752, ss138140965, ss139093447, ss156192169, ss160579413, ss173151086, ss173464527 NT_004487.19:56477176:T:C NC_000001.11:205019406:T:C (self)
3204357, ss3896026963 NC_000001.10:204988534:T:G NC_000001.11:205019406:T:G (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs2794866

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post761+d5e8e07