Skip to main content
NCBI
 dbSNP
PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs11567977                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/137
Map to Genome Build:37.4/Weight
Validation Status:
Allele
Variation Class:DIV:
deletion/insertion variation
RefSNP Alleles:-/C (FWD)
Allele Origin:
Ancestral Allele:C
Clinical Channel:unknown
Clinical Significance:NA
MAF/MinorAlleleCount:NA
MAF Source:
HGVS Names
NC_000005.9:g.137654174delG
NM_001790.3:c.615+734delC
NM_022809.2:c.396+734delC
NT_034772.6:g.45968046delG
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' or 'Contig Pos' column value to see variation in NCBI sequence viewer) back to top

  GeneView back to top

  Submitter records for this RefSNP Cluster back to top
The submission ss287781668 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11567977 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss16338867EGP_SNPS|CDC25C-015331fwd/B-/Ctcttaaactcctggcctcaggtgatctaccacctcaggcttccaaagtgctgggattgca12/12/0301/23/04120Genomicunknown
ss256069745BL|SNP7720_5_137682072rev/-/Gtgcaatcccagcactttggaagcctgaggtgggtagatcacctgaggccaggagtttaag08/20/1008/20/10137Genomicunknown
ss287781668GMI|GMI_NA10851_INDEL_114561rev/-/Gtgcaatcccagcactttggaagcctgaggtggtagatcacctgaggccaggagtttaaga04/26/1012/21/10134Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs11567977|allelePos=501|totalLen=1001|taxid=9606|snpclass=2|alleles='-/C'|mol=Genomic|build=137
 ACAGCCCAGT TGGTTGCAGC CTTGAGTTTG CCTTATTTGA ACATGGTTTA AACAGTTGAT
 TGCTTGTGGT TGACTGAAGC TCAGCTGCTG TGCTTTCCTG AGACTCAGCT TTTTGATACA
 AAAGTATACT TCTAAATTAG GCTTTCAGTT AGTTTAAGTA CTAAGTTAGG TTGCAACTTG
 GTATATAAAG ACTCAAGTAC AGAGGCATCC CCAGGCCAAA TTTAGTTTAA TTAAGAATTC
 ATTCTTCTTT TTTTTGTTGT TTGTTTTTTT TAAGACAGAT TCTCGCTCTG TCGCCTAGGC
 TGGAGTGCAG TGGCGCCATC TTGGCTCACT GCGACCTCCT CTTCCCAGGT TCAAGCGATT
 CTCCTGCCTC AGCCTCTCGA GTAGCTGGGA TTACAGGTGT GCACCACCAC ACCCGGGTAA
 TTTTTAGTAT TTTTAGTAGA GACAGGGTTT CACCATGTTG GCCAGGCTGG TCTTAAACTC
 CTGGCCTCAG GTGATCTACC
 N
 ACCTCAGGCT TCCAAAGTGC TGGGATTGCA AGCGTGAGCC ACCATGCCCA GCCAACAATT
 CATTCTTGAA TAAACATTTT ATGCCTGATA TGTATGAGTC ACTCTACTAA ATGCTAGAGC
 TACAGAGATC AACAAGATGT GATAACCTAT CTTTATTTAT TTATTTATTT TTGAGATGGA
 GTCTTGCTGT GTCACCTAGG CTGGAGTGCA GTGGTGGTAT CTCAGCTCAC TGCAACCTCC
 GTCTCCTGGG TTTAAGTGAT TCTCTTGCCT CAGCCTCCCA AAGCACGCCA TCATGCCTGG
 CTAATTTTTT GTAATTTTAG TAGAGACGGG GTTTTGCCAT GTTGGCCAGA CTGGTCTCGA
 ACTCCTGACC TCAAGTGATC TGCCCGCCTT GGCCTCCCAA AGAGCTGGGA TTACAGGCAT
 GAGCCACCAC GCCTGGCGTA ACCTATCTTT AGACTGTAGG GTTACCTGAC TGATAGGTTA
 TCAGGTCACT ACAGAAATCT

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
AY497474
dbSNP Blast Analysis

  Population Diversity back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
Source-/C
C/C
HWP-
C
ss16338867PDR90Global 176IG 0.011 0.989 1.000 0.006 0.994

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
-1.000+/-0909000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNYES

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement