Name: rs10517550
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs10517550

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr4:61931351 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: G>A / G>T
Variation Type: SNV Single Nucleotide Variation
Frequency: A=0.032816 (8686/264690, TOPMED)
A=0.030736 (4309/140194, GnomAD)
A=0.06476 (5097/78702, PAGE_STUDY) (+ 18 more)
A=0.16303 (4607/28258, 14KJPN)
A=0.02546 (493/19366, ALFA)
A=0.16319 (2735/16760, 8.3KJPN)
A=0.0582 (373/6404, 1000G_30x)
A=0.0607 (304/5008, 1000G)
A=0.0350 (157/4480, Estonian)
A=0.0189 (73/3854, ALSPAC)
A=0.0194 (72/3708, TWINSUK)
A=0.1870 (548/2930, KOREAN)
A=0.1681 (308/1832, Korea1K)
A=0.033 (33/998, GoNL)
A=0.043 (26/600, NorthernSweden)
A=0.040 (13/328, HapMap)
A=0.046 (10/216, Qatari)
A=0.139 (30/216, Vietnamese)
G=0.392 (51/130, SGDP_PRJ)
A=0.05 (2/40, GENOME_DK)
G=0.4 (3/8, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: ADGRL3 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	19366	G=0.97454	A=0.02546
European	Sub	14286	G=0.97739	A=0.02261
African	Sub	3370	G=0.9777	A=0.0223
African Others	Sub	114	G=0.982	A=0.018
African American	Sub	3256	G=0.9776	A=0.0224
Asian	Sub	112	G=0.875	A=0.125
East Asian	Sub	86	G=0.88	A=0.12
Other Asian	Sub	26	G=0.85	A=0.15
Latin American 1	Sub	146	G=0.945	A=0.055
Latin American 2	Sub	610	G=0.936	A=0.064
South Asian	Sub	98	G=0.91	A=0.09
Other	Sub	744	G=0.966	A=0.034

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	G=0.967184	A=0.032816
gnomAD - Genomes	Global	Study-wide	140194	G=0.969264	A=0.030736
gnomAD - Genomes	European	Sub	75926	G=0.97520	A=0.02480
gnomAD - Genomes	African	Sub	42022	G=0.97901	A=0.02099
gnomAD - Genomes	American	Sub	13642	G=0.94099	A=0.05901
gnomAD - Genomes	Ashkenazi Jewish	Sub	3320	G=0.9807	A=0.0193
gnomAD - Genomes	East Asian	Sub	3130	G=0.8121	A=0.1879
gnomAD - Genomes	Other	Sub	2154	G=0.9596	A=0.0404
The PAGE Study	Global	Study-wide	78702	G=0.93524	A=0.06476
The PAGE Study	AfricanAmerican	Sub	32516	G=0.97976	A=0.02024
The PAGE Study	Mexican	Sub	10810	G=0.93108	A=0.06892
The PAGE Study	Asian	Sub	8318	G=0.8385	A=0.1615
The PAGE Study	PuertoRican	Sub	7918	G=0.9563	A=0.0437
The PAGE Study	NativeHawaiian	Sub	4534	G=0.7106	A=0.2894
The PAGE Study	Cuban	Sub	4230	G=0.9757	A=0.0243
The PAGE Study	Dominican	Sub	3828	G=0.9681	A=0.0319
The PAGE Study	CentralAmerican	Sub	2450	G=0.9339	A=0.0661
The PAGE Study	SouthAmerican	Sub	1982	G=0.9082	A=0.0918
The PAGE Study	NativeAmerican	Sub	1260	G=0.9484	A=0.0516
The PAGE Study	SouthAsian	Sub	856	G=0.931	A=0.069
14KJPN	JAPANESE	Study-wide	28258	G=0.83697	A=0.16303
Allele Frequency Aggregator	Total	Global	19366	G=0.97454	A=0.02546
Allele Frequency Aggregator	European	Sub	14286	G=0.97739	A=0.02261
Allele Frequency Aggregator	African	Sub	3370	G=0.9777	A=0.0223
Allele Frequency Aggregator	Other	Sub	744	G=0.966	A=0.034
Allele Frequency Aggregator	Latin American 2	Sub	610	G=0.936	A=0.064
Allele Frequency Aggregator	Latin American 1	Sub	146	G=0.945	A=0.055
Allele Frequency Aggregator	Asian	Sub	112	G=0.875	A=0.125
Allele Frequency Aggregator	South Asian	Sub	98	G=0.91	A=0.09
8.3KJPN	JAPANESE	Study-wide	16760	G=0.83681	A=0.16319
1000Genomes_30x	Global	Study-wide	6404	G=0.9418	A=0.0582
1000Genomes_30x	African	Sub	1786	G=0.9905	A=0.0095
1000Genomes_30x	Europe	Sub	1266	G=0.9763	A=0.0237
1000Genomes_30x	South Asian	Sub	1202	G=0.9235	A=0.0765
1000Genomes_30x	East Asian	Sub	1170	G=0.8427	A=0.1573
1000Genomes_30x	American	Sub	980	G=0.949	A=0.051
1000Genomes	Global	Study-wide	5008	G=0.9393	A=0.0607
1000Genomes	African	Sub	1322	G=0.9871	A=0.0129
1000Genomes	East Asian	Sub	1008	G=0.8442	A=0.1558
1000Genomes	Europe	Sub	1006	G=0.9751	A=0.0249
1000Genomes	South Asian	Sub	978	G=0.927	A=0.073
1000Genomes	American	Sub	694	G=0.951	A=0.049
Genetic variation in the Estonian population	Estonian	Study-wide	4480	G=0.9650	A=0.0350
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.9811	A=0.0189
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.9806	A=0.0194
KOREAN population from KRGDB	KOREAN	Study-wide	2930	G=0.8130	A=0.1870, T=0.0000
Korean Genome Project	KOREAN	Study-wide	1832	G=0.8319	A=0.1681
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	G=0.967	A=0.033
Northern Sweden	ACPOP	Study-wide	600	G=0.957	A=0.043
HapMap	Global	Study-wide	328	G=0.960	A=0.040
HapMap	African	Sub	120	G=0.983	A=0.017
HapMap	American	Sub	120	G=0.992	A=0.008
HapMap	Asian	Sub	88	G=0.89	A=0.11
Qatari	Global	Study-wide	216	G=0.954	A=0.046
A Vietnamese Genetic Variation Database	Global	Study-wide	216	G=0.861	A=0.139
SGDP_PRJ	Global	Study-wide	130	G=0.392	A=0.608
The Danish reference pan genome	Danish	Study-wide	40	G=0.95	A=0.05
Siberian	Global	Study-wide	8	G=0.4	A=0.6

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 4	NC_000004.12:g.61931351G>A
GRCh38.p14 chr 4	NC_000004.12:g.61931351G>T
GRCh37.p13 chr 4	NC_000004.11:g.62797069G>A
GRCh37.p13 chr 4	NC_000004.11:g.62797069G>T
ADGRL3 RefSeqGene	NG_033950.2:g.735096G>A
ADGRL3 RefSeqGene	NG_033950.2:g.735096G>T

Gene: ADGRL3, adhesion G protein-coupled receptor L3 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
ADGRL3 transcript variant 3	NM_001322246.3:c.1909-348… NM_001322246.3:c.1909-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 1	NM_001322402.3:c.2113-348… NM_001322402.3:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 4	NM_001371342.1:c.1855-348… NM_001371342.1:c.1855-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 5	NM_001371343.2:c.2059-348… NM_001371343.2:c.2059-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 6	NM_001371344.2:c.2113-348… NM_001371344.2:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 7	NM_001371345.2:c.2074-348… NM_001371345.2:c.2074-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 8	NM_001371346.2:c.1894-348… NM_001371346.2:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 9	NM_001387522.1:c.2113-348… NM_001387522.1:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 10	NM_001387523.1:c.2059-348… NM_001387523.1:c.2059-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 11	NM_001387524.1:c.2059-348… NM_001387524.1:c.2059-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 12	NM_001387525.1:c.2059-348… NM_001387525.1:c.2059-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 13	NM_001387526.1:c.1894-348… NM_001387526.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 14	NM_001387527.1:c.1894-348… NM_001387527.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 15	NM_001387528.1:c.1909-348… NM_001387528.1:c.1909-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 16	NM_001387529.1:c.1909-348… NM_001387529.1:c.1909-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 17	NM_001387530.1:c.1894-348… NM_001387530.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 18	NM_001387531.1:c.1894-348… NM_001387531.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 19	NM_001387532.1:c.1894-348… NM_001387532.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 20	NM_001387533.1:c.1909-348… NM_001387533.1:c.1909-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 21	NM_001387534.1:c.1909-348… NM_001387534.1:c.1909-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 22	NM_001387535.1:c.1894-348… NM_001387535.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 23	NM_001387536.1:c.1894-348… NM_001387536.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 24	NM_001387537.1:c.1870-348… NM_001387537.1:c.1870-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 25	NM_001387538.1:c.1870-348… NM_001387538.1:c.1870-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 26	NM_001387539.1:c.1870-348… NM_001387539.1:c.1870-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 27	NM_001387540.1:c.1855-348… NM_001387540.1:c.1855-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 28	NM_001387541.1:c.1831-348… NM_001387541.1:c.1831-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 29	NM_001387542.1:c.1894-348… NM_001387542.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 30	NM_001387543.1:c.1612-348… NM_001387543.1:c.1612-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 31	NM_001387544.1:c.1612-348… NM_001387544.1:c.1612-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 32	NM_001387545.1:c.2113-348… NM_001387545.1:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 33	NM_001387546.1:c.1894-348… NM_001387546.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 34	NM_001387547.1:c.1909-348… NM_001387547.1:c.1909-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 35	NM_001387548.1:c.1894-348… NM_001387548.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 36	NM_001387549.1:c.1894-348… NM_001387549.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 37	NM_001387552.1:c.2113-348… NM_001387552.1:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant 2	NM_015236.7:c.1909-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X13	XM_011531791.2:c.2074-348… XM_011531791.2:c.2074-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X2	XM_017007929.2:c.2113-348… XM_017007929.2:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X1	XM_017007930.1:c.2113-348… XM_017007930.1:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X3	XM_017007931.1:c.2113-348… XM_017007931.1:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X7	XM_017007933.1:c.2113-348… XM_017007933.1:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X8	XM_017007934.1:c.2098-348… XM_017007934.1:c.2098-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X9	XM_017007936.1:c.2074-348… XM_017007936.1:c.2074-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X12	XM_017007937.1:c.1909-348… XM_017007937.1:c.1909-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X17	XM_017007940.1:c.2113-348… XM_017007940.1:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X19	XM_017007941.1:c.2113-348… XM_017007941.1:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X4	XM_047449934.1:c.2098-348… XM_047449934.1:c.2098-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X5	XM_047449935.1:c.2074-348… XM_047449935.1:c.2074-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X6	XM_047449936.1:c.2059-348… XM_047449936.1:c.2059-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X10	XM_047449937.1:c.2098-348… XM_047449937.1:c.2098-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X11	XM_047449938.1:c.2083-348… XM_047449938.1:c.2083-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X14	XM_047449939.1:c.1894-348… XM_047449939.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X15	XM_047449940.1:c.1894-348… XM_047449940.1:c.1894-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X16	XM_047449941.1:c.1855-348… XM_047449941.1:c.1855-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X18	XM_047449942.1:c.2098-348… XM_047449942.1:c.2098-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X20	XM_047449943.1:c.2098-348… XM_047449943.1:c.2098-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X21	XM_047449944.1:c.2113-348… XM_047449944.1:c.2113-3489G>A	N/A	Intron Variant
ADGRL3 transcript variant X22	XM_047449945.1:c.2074-348… XM_047449945.1:c.2074-3489G>A	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	G=	A	T
GRCh38.p14 chr 4	NC_000004.12:g.61931351=	NC_000004.12:g.61931351G>A	NC_000004.12:g.61931351G>T
GRCh37.p13 chr 4	NC_000004.11:g.62797069=	NC_000004.11:g.62797069G>A	NC_000004.11:g.62797069G>T
ADGRL3 RefSeqGene	NG_033950.2:g.735096=	NG_033950.2:g.735096G>A	NG_033950.2:g.735096G>T
ADGRL3 transcript variant 3	NM_001322246.3:c.1909-3489=	NM_001322246.3:c.1909-3489G>A	NM_001322246.3:c.1909-3489G>T
ADGRL3 transcript variant 1	NM_001322402.3:c.2113-3489=	NM_001322402.3:c.2113-3489G>A	NM_001322402.3:c.2113-3489G>T
ADGRL3 transcript variant 4	NM_001371342.1:c.1855-3489=	NM_001371342.1:c.1855-3489G>A	NM_001371342.1:c.1855-3489G>T
ADGRL3 transcript variant 5	NM_001371343.2:c.2059-3489=	NM_001371343.2:c.2059-3489G>A	NM_001371343.2:c.2059-3489G>T
ADGRL3 transcript variant 6	NM_001371344.2:c.2113-3489=	NM_001371344.2:c.2113-3489G>A	NM_001371344.2:c.2113-3489G>T
ADGRL3 transcript variant 7	NM_001371345.2:c.2074-3489=	NM_001371345.2:c.2074-3489G>A	NM_001371345.2:c.2074-3489G>T
ADGRL3 transcript variant 8	NM_001371346.2:c.1894-3489=	NM_001371346.2:c.1894-3489G>A	NM_001371346.2:c.1894-3489G>T
ADGRL3 transcript variant 9	NM_001387522.1:c.2113-3489=	NM_001387522.1:c.2113-3489G>A	NM_001387522.1:c.2113-3489G>T
ADGRL3 transcript variant 10	NM_001387523.1:c.2059-3489=	NM_001387523.1:c.2059-3489G>A	NM_001387523.1:c.2059-3489G>T
ADGRL3 transcript variant 11	NM_001387524.1:c.2059-3489=	NM_001387524.1:c.2059-3489G>A	NM_001387524.1:c.2059-3489G>T
ADGRL3 transcript variant 12	NM_001387525.1:c.2059-3489=	NM_001387525.1:c.2059-3489G>A	NM_001387525.1:c.2059-3489G>T
ADGRL3 transcript variant 13	NM_001387526.1:c.1894-3489=	NM_001387526.1:c.1894-3489G>A	NM_001387526.1:c.1894-3489G>T
ADGRL3 transcript variant 14	NM_001387527.1:c.1894-3489=	NM_001387527.1:c.1894-3489G>A	NM_001387527.1:c.1894-3489G>T
ADGRL3 transcript variant 15	NM_001387528.1:c.1909-3489=	NM_001387528.1:c.1909-3489G>A	NM_001387528.1:c.1909-3489G>T
ADGRL3 transcript variant 16	NM_001387529.1:c.1909-3489=	NM_001387529.1:c.1909-3489G>A	NM_001387529.1:c.1909-3489G>T
ADGRL3 transcript variant 17	NM_001387530.1:c.1894-3489=	NM_001387530.1:c.1894-3489G>A	NM_001387530.1:c.1894-3489G>T
ADGRL3 transcript variant 18	NM_001387531.1:c.1894-3489=	NM_001387531.1:c.1894-3489G>A	NM_001387531.1:c.1894-3489G>T
ADGRL3 transcript variant 19	NM_001387532.1:c.1894-3489=	NM_001387532.1:c.1894-3489G>A	NM_001387532.1:c.1894-3489G>T
ADGRL3 transcript variant 20	NM_001387533.1:c.1909-3489=	NM_001387533.1:c.1909-3489G>A	NM_001387533.1:c.1909-3489G>T
ADGRL3 transcript variant 21	NM_001387534.1:c.1909-3489=	NM_001387534.1:c.1909-3489G>A	NM_001387534.1:c.1909-3489G>T
ADGRL3 transcript variant 22	NM_001387535.1:c.1894-3489=	NM_001387535.1:c.1894-3489G>A	NM_001387535.1:c.1894-3489G>T
ADGRL3 transcript variant 23	NM_001387536.1:c.1894-3489=	NM_001387536.1:c.1894-3489G>A	NM_001387536.1:c.1894-3489G>T
ADGRL3 transcript variant 24	NM_001387537.1:c.1870-3489=	NM_001387537.1:c.1870-3489G>A	NM_001387537.1:c.1870-3489G>T
ADGRL3 transcript variant 25	NM_001387538.1:c.1870-3489=	NM_001387538.1:c.1870-3489G>A	NM_001387538.1:c.1870-3489G>T
ADGRL3 transcript variant 26	NM_001387539.1:c.1870-3489=	NM_001387539.1:c.1870-3489G>A	NM_001387539.1:c.1870-3489G>T
ADGRL3 transcript variant 27	NM_001387540.1:c.1855-3489=	NM_001387540.1:c.1855-3489G>A	NM_001387540.1:c.1855-3489G>T
ADGRL3 transcript variant 28	NM_001387541.1:c.1831-3489=	NM_001387541.1:c.1831-3489G>A	NM_001387541.1:c.1831-3489G>T
ADGRL3 transcript variant 29	NM_001387542.1:c.1894-3489=	NM_001387542.1:c.1894-3489G>A	NM_001387542.1:c.1894-3489G>T
ADGRL3 transcript variant 30	NM_001387543.1:c.1612-3489=	NM_001387543.1:c.1612-3489G>A	NM_001387543.1:c.1612-3489G>T
ADGRL3 transcript variant 31	NM_001387544.1:c.1612-3489=	NM_001387544.1:c.1612-3489G>A	NM_001387544.1:c.1612-3489G>T
ADGRL3 transcript variant 32	NM_001387545.1:c.2113-3489=	NM_001387545.1:c.2113-3489G>A	NM_001387545.1:c.2113-3489G>T
ADGRL3 transcript variant 33	NM_001387546.1:c.1894-3489=	NM_001387546.1:c.1894-3489G>A	NM_001387546.1:c.1894-3489G>T
ADGRL3 transcript variant 34	NM_001387547.1:c.1909-3489=	NM_001387547.1:c.1909-3489G>A	NM_001387547.1:c.1909-3489G>T
ADGRL3 transcript variant 35	NM_001387548.1:c.1894-3489=	NM_001387548.1:c.1894-3489G>A	NM_001387548.1:c.1894-3489G>T
ADGRL3 transcript variant 36	NM_001387549.1:c.1894-3489=	NM_001387549.1:c.1894-3489G>A	NM_001387549.1:c.1894-3489G>T
ADGRL3 transcript variant 37	NM_001387552.1:c.2113-3489=	NM_001387552.1:c.2113-3489G>A	NM_001387552.1:c.2113-3489G>T
ADGRL3 transcript	NM_015236.4:c.1909-3489=	NM_015236.4:c.1909-3489G>A	NM_015236.4:c.1909-3489G>T
ADGRL3 transcript variant 2	NM_015236.7:c.1909-3489=	NM_015236.7:c.1909-3489G>A	NM_015236.7:c.1909-3489G>T
LPHN3 transcript variant X1	XM_005265660.1:c.2113-3489=	XM_005265660.1:c.2113-3489G>A	XM_005265660.1:c.2113-3489G>T
LPHN3 transcript variant X2	XM_005265661.1:c.1909-3489=	XM_005265661.1:c.1909-3489G>A	XM_005265661.1:c.1909-3489G>T
ADGRL3 transcript variant X13	XM_011531791.2:c.2074-3489=	XM_011531791.2:c.2074-3489G>A	XM_011531791.2:c.2074-3489G>T
ADGRL3 transcript variant X2	XM_017007929.2:c.2113-3489=	XM_017007929.2:c.2113-3489G>A	XM_017007929.2:c.2113-3489G>T
ADGRL3 transcript variant X1	XM_017007930.1:c.2113-3489=	XM_017007930.1:c.2113-3489G>A	XM_017007930.1:c.2113-3489G>T
ADGRL3 transcript variant X3	XM_017007931.1:c.2113-3489=	XM_017007931.1:c.2113-3489G>A	XM_017007931.1:c.2113-3489G>T
ADGRL3 transcript variant X7	XM_017007933.1:c.2113-3489=	XM_017007933.1:c.2113-3489G>A	XM_017007933.1:c.2113-3489G>T
ADGRL3 transcript variant X8	XM_017007934.1:c.2098-3489=	XM_017007934.1:c.2098-3489G>A	XM_017007934.1:c.2098-3489G>T
ADGRL3 transcript variant X9	XM_017007936.1:c.2074-3489=	XM_017007936.1:c.2074-3489G>A	XM_017007936.1:c.2074-3489G>T
ADGRL3 transcript variant X12	XM_017007937.1:c.1909-3489=	XM_017007937.1:c.1909-3489G>A	XM_017007937.1:c.1909-3489G>T
ADGRL3 transcript variant X17	XM_017007940.1:c.2113-3489=	XM_017007940.1:c.2113-3489G>A	XM_017007940.1:c.2113-3489G>T
ADGRL3 transcript variant X19	XM_017007941.1:c.2113-3489=	XM_017007941.1:c.2113-3489G>A	XM_017007941.1:c.2113-3489G>T
ADGRL3 transcript variant X4	XM_047449934.1:c.2098-3489=	XM_047449934.1:c.2098-3489G>A	XM_047449934.1:c.2098-3489G>T
ADGRL3 transcript variant X5	XM_047449935.1:c.2074-3489=	XM_047449935.1:c.2074-3489G>A	XM_047449935.1:c.2074-3489G>T
ADGRL3 transcript variant X6	XM_047449936.1:c.2059-3489=	XM_047449936.1:c.2059-3489G>A	XM_047449936.1:c.2059-3489G>T
ADGRL3 transcript variant X10	XM_047449937.1:c.2098-3489=	XM_047449937.1:c.2098-3489G>A	XM_047449937.1:c.2098-3489G>T
ADGRL3 transcript variant X11	XM_047449938.1:c.2083-3489=	XM_047449938.1:c.2083-3489G>A	XM_047449938.1:c.2083-3489G>T
ADGRL3 transcript variant X14	XM_047449939.1:c.1894-3489=	XM_047449939.1:c.1894-3489G>A	XM_047449939.1:c.1894-3489G>T
ADGRL3 transcript variant X15	XM_047449940.1:c.1894-3489=	XM_047449940.1:c.1894-3489G>A	XM_047449940.1:c.1894-3489G>T
ADGRL3 transcript variant X16	XM_047449941.1:c.1855-3489=	XM_047449941.1:c.1855-3489G>A	XM_047449941.1:c.1855-3489G>T
ADGRL3 transcript variant X18	XM_047449942.1:c.2098-3489=	XM_047449942.1:c.2098-3489G>A	XM_047449942.1:c.2098-3489G>T
ADGRL3 transcript variant X20	XM_047449943.1:c.2098-3489=	XM_047449943.1:c.2098-3489G>A	XM_047449943.1:c.2098-3489G>T
ADGRL3 transcript variant X21	XM_047449944.1:c.2113-3489=	XM_047449944.1:c.2113-3489G>A	XM_047449944.1:c.2113-3489G>T
ADGRL3 transcript variant X22	XM_047449945.1:c.2074-3489=	XM_047449945.1:c.2074-3489G>A	XM_047449945.1:c.2074-3489G>T

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

61 SubSNP, 21 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	PERLEGEN	ss14919024	Dec 05, 2003 (119)
2	PERLEGEN	ss24221946	Sep 20, 2004 (123)
3	AFFY	ss66014213	Dec 02, 2006 (127)
4	1000GENOMES	ss220949381	Jul 14, 2010 (132)
5	1000GENOMES	ss239700257	Jul 15, 2010 (132)
6	GMI	ss277738487	May 04, 2012 (137)
7	TISHKOFF	ss557544361	Apr 25, 2013 (138)
8	SSMP	ss651344920	Apr 25, 2013 (138)
9	EVA-GONL	ss980159986	Aug 21, 2014 (142)
10	JMKIDD_LAB	ss1071571160	Aug 21, 2014 (142)
11	1000GENOMES	ss1309907137	Aug 21, 2014 (142)
12	EVA_GENOME_DK	ss1580574951	Apr 01, 2015 (144)
13	EVA_DECODE	ss1589660556	Apr 01, 2015 (144)
14	EVA_UK10K_ALSPAC	ss1610172601	Apr 01, 2015 (144)
15	EVA_UK10K_TWINSUK	ss1653166634	Apr 01, 2015 (144)
16	WEILL_CORNELL_DGM	ss1923400076	Feb 12, 2016 (147)
17	ILLUMINA	ss1958686987	Feb 12, 2016 (147)
18	ILLUMINA	ss1958686988	Feb 12, 2016 (147)
19	GENOMED	ss1969751637	Jul 19, 2016 (147)
20	JJLAB	ss2022284902	Sep 14, 2016 (149)
21	USC_VALOUEV	ss2150411386	Dec 20, 2016 (150)
22	HUMAN_LONGEVITY	ss2263233733	Dec 20, 2016 (150)
23	SYSTEMSBIOZJU	ss2625641906	Nov 08, 2017 (151)
24	GRF	ss2705879837	Nov 08, 2017 (151)
25	GNOMAD	ss2809786576	Nov 08, 2017 (151)
26	AFFY	ss2985917454	Nov 08, 2017 (151)
27	SWEGEN	ss2994770378	Nov 08, 2017 (151)
28	ILLUMINA	ss3022377256	Nov 08, 2017 (151)
29	ILLUMINA	ss3022377257	Nov 08, 2017 (151)
30	ILLUMINA	ss3652862103	Oct 12, 2018 (152)
31	ILLUMINA	ss3652862104	Oct 12, 2018 (152)
32	EGCUT_WGS	ss3662660397	Jul 13, 2019 (153)
33	EVA_DECODE	ss3712136667	Jul 13, 2019 (153)
34	ILLUMINA	ss3726136582	Jul 13, 2019 (153)
35	ACPOP	ss3731187870	Jul 13, 2019 (153)
36	EVA	ss3761850109	Jul 13, 2019 (153)
37	PAGE_CC	ss3771127205	Jul 13, 2019 (153)
38	KHV_HUMAN_GENOMES	ss3804987491	Jul 13, 2019 (153)
39	EVA	ss3828563825	Apr 26, 2020 (154)
40	SGDP_PRJ	ss3859039243	Apr 26, 2020 (154)
41	KRGDB	ss3905283483	Apr 26, 2020 (154)
42	KOGIC	ss3954264734	Apr 26, 2020 (154)
43	TOPMED	ss4615323068	Apr 27, 2021 (155)
44	TOMMO_GENOMICS	ss5165905665	Apr 27, 2021 (155)
45	EVA	ss5237349930	Apr 27, 2021 (155)
46	1000G_HIGH_COVERAGE	ss5259352498	Oct 17, 2022 (156)
47	EVA	ss5349279901	Oct 17, 2022 (156)
48	HUGCELL_USP	ss5458094413	Oct 17, 2022 (156)
49	EVA	ss5507532054	Oct 17, 2022 (156)
50	1000G_HIGH_COVERAGE	ss5540504614	Oct 17, 2022 (156)
51	SANFORD_IMAGENETICS	ss5624556747	Oct 17, 2022 (156)
52	SANFORD_IMAGENETICS	ss5635117385	Oct 17, 2022 (156)
53	TOMMO_GENOMICS	ss5700303232	Oct 17, 2022 (156)
54	YY_MCH	ss5805123042	Oct 17, 2022 (156)
55	EVA	ss5844056111	Oct 17, 2022 (156)
56	EVA	ss5847243908	Oct 17, 2022 (156)
57	EVA	ss5848011563	Oct 17, 2022 (156)
58	EVA	ss5854241478	Oct 17, 2022 (156)
59	EVA	ss5863610647	Oct 17, 2022 (156)
60	EVA	ss5963492517	Oct 17, 2022 (156)
61	EVA	ss5979701508	Oct 17, 2022 (156)
62	1000Genomes	NC_000004.11 - 62797069	Oct 12, 2018 (152)
63	1000Genomes_30x	NC_000004.12 - 61931351	Oct 17, 2022 (156)
64	The Avon Longitudinal Study of Parents and Children	NC_000004.11 - 62797069	Oct 12, 2018 (152)
65	Genetic variation in the Estonian population	NC_000004.11 - 62797069	Oct 12, 2018 (152)
66	The Danish reference pan genome	NC_000004.11 - 62797069	Apr 26, 2020 (154)
67	gnomAD - Genomes	NC_000004.12 - 61931351	Apr 27, 2021 (155)
68	Genome of the Netherlands Release 5	NC_000004.11 - 62797069	Apr 26, 2020 (154)
69	HapMap	NC_000004.12 - 61931351	Apr 26, 2020 (154)
70	KOREAN population from KRGDB	NC_000004.11 - 62797069	Apr 26, 2020 (154)
71	Korean Genome Project	NC_000004.12 - 61931351	Apr 26, 2020 (154)
72	Northern Sweden	NC_000004.11 - 62797069	Jul 13, 2019 (153)
73	The PAGE Study	NC_000004.12 - 61931351	Jul 13, 2019 (153)
74	Qatari	NC_000004.11 - 62797069	Apr 26, 2020 (154)
75	SGDP_PRJ	NC_000004.11 - 62797069	Apr 26, 2020 (154)
76	Siberian	NC_000004.11 - 62797069	Apr 26, 2020 (154)
77	8.3KJPN	NC_000004.11 - 62797069	Apr 27, 2021 (155)
78	14KJPN	NC_000004.12 - 61931351	Oct 17, 2022 (156)
79	TopMed	NC_000004.12 - 61931351	Apr 27, 2021 (155)
80	UK 10K study - Twins	NC_000004.11 - 62797069	Oct 12, 2018 (152)
81	A Vietnamese Genetic Variation Database	NC_000004.11 - 62797069	Jul 13, 2019 (153)
82	ALFA	NC_000004.12 - 61931351	Apr 27, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs17292093	Oct 07, 2004 (123)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss277738487, ss1589660556	NC_000004.10:62479663:G:A	NC_000004.12:61931350:G:A	(self)
21308495, 11854366, 8398645, 6739890, 5230885, 12460877, 4472735, 5442006, 11056223, 2927740, 23874972, 11854366, 2606646, ss220949381, ss239700257, ss557544361, ss651344920, ss980159986, ss1071571160, ss1309907137, ss1580574951, ss1610172601, ss1653166634, ss1923400076, ss1958686987, ss1958686988, ss1969751637, ss2022284902, ss2150411386, ss2625641906, ss2705879837, ss2809786576, ss2985917454, ss2994770378, ss3022377256, ss3022377257, ss3652862103, ss3652862104, ss3662660397, ss3731187870, ss3761850109, ss3828563825, ss3859039243, ss3905283483, ss5165905665, ss5237349930, ss5349279901, ss5507532054, ss5624556747, ss5635117385, ss5844056111, ss5847243908, ss5848011563, ss5963492517, ss5979701508	NC_000004.11:62797068:G:A	NC_000004.12:61931350:G:A	(self)
28030549, 150999832, 2622994, 10642735, 348674, 34140336, 452700624, 5407644789, ss2263233733, ss3712136667, ss3726136582, ss3771127205, ss3804987491, ss3954264734, ss4615323068, ss5259352498, ss5458094413, ss5540504614, ss5700303232, ss5805123042, ss5854241478, ss5863610647	NC_000004.12:61931350:G:A	NC_000004.12:61931350:G:A	(self)
ss14919024, ss24221946, ss66014213	NT_022778.16:3007735:G:A	NC_000004.12:61931350:G:A	(self)
12460877, ss3905283483	NC_000004.11:62797068:G:T	NC_000004.12:61931350:G:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs10517550

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs10517550