Name: rs10408163
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs10408163

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr19:47093845 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: T>A / T>C
Variation Type: SNV Single Nucleotide Variation
Frequency: T=0.330340 (107572/325640, ALFA)
T=0.495769 (131225/264690, TOPMED)
T=0.474502 (66398/139932, GnomAD) (+ 22 more)
C=0.37280 (29339/78700, PAGE_STUDY)
C=0.22624 (6393/28258, 14KJPN)
C=0.22691 (3803/16760, 8.3KJPN)
C=0.3710 (2376/6404, 1000G_30x)
C=0.3756 (1881/5008, 1000G)
T=0.3261 (1461/4480, Estonian)
T=0.2929 (1129/3854, ALSPAC)
T=0.2861 (1061/3708, TWINSUK)
C=0.2403 (704/2930, KOREAN)
C=0.4400 (917/2084, HGDP_Stanford)
C=0.3309 (626/1892, HapMap)
C=0.2200 (403/1832, Korea1K)
T=0.285 (284/998, GoNL)
C=0.308 (243/790, PRJEB37584)
T=0.310 (186/600, NorthernSweden)
C=0.109 (58/534, MGP)
T=0.341 (118/346, SGDP_PRJ)
T=0.472 (102/216, Qatari)
C=0.316 (67/212, Vietnamese)
T=0.25 (14/56, Ancient Sardinia)
T=0.33 (15/46, Siberian)
T=0.30 (12/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: ZC3H4 : Intron Variant
Publications: 1 citation
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	325856	T=0.330388	C=0.669612
European	Sub	281150	T=0.294370	C=0.705630
African	Sub	8440	T=0.7934	C=0.2066
African Others	Sub	318	T=0.881	C=0.119
African American	Sub	8122	T=0.7900	C=0.2100
Asian	Sub	6870	T=0.7261	C=0.2739
East Asian	Sub	4932	T=0.7378	C=0.2622
Other Asian	Sub	1938	T=0.6961	C=0.3039
Latin American 1	Sub	1130	T=0.4779	C=0.5221
Latin American 2	Sub	7200	T=0.4444	C=0.5556
South Asian	Sub	5224	T=0.5433	C=0.4567
Other	Sub	15842	T=0.41882	C=0.58118

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	325640	T=0.330340	C=0.669660
Allele Frequency Aggregator	European	Sub	280970	T=0.294316	C=0.705684
Allele Frequency Aggregator	Other	Sub	15820	T=0.41890	C=0.58110
Allele Frequency Aggregator	African	Sub	8426	T=0.7934	C=0.2066
Allele Frequency Aggregator	Latin American 2	Sub	7200	T=0.4444	C=0.5556
Allele Frequency Aggregator	Asian	Sub	6870	T=0.7261	C=0.2739
Allele Frequency Aggregator	South Asian	Sub	5224	T=0.5433	C=0.4567
Allele Frequency Aggregator	Latin American 1	Sub	1130	T=0.4779	C=0.5221
TopMed	Global	Study-wide	264690	T=0.495769	C=0.504231
gnomAD - Genomes	Global	Study-wide	139932	T=0.474502	C=0.525498
gnomAD - Genomes	European	Sub	75822	T=0.29990	C=0.70010
gnomAD - Genomes	African	Sub	41900	T=0.79184	C=0.20816
gnomAD - Genomes	American	Sub	13624	T=0.44025	C=0.55975
gnomAD - Genomes	Ashkenazi Jewish	Sub	3322	T=0.3721	C=0.6279
gnomAD - Genomes	East Asian	Sub	3114	T=0.7129	C=0.2871
gnomAD - Genomes	Other	Sub	2150	T=0.4777	C=0.5223
The PAGE Study	Global	Study-wide	78700	T=0.62720	C=0.37280
The PAGE Study	AfricanAmerican	Sub	32516	T=0.78208	C=0.21792
The PAGE Study	Mexican	Sub	10810	T=0.42081	C=0.57919
The PAGE Study	Asian	Sub	8318	T=0.7282	C=0.2718
The PAGE Study	PuertoRican	Sub	7918	T=0.5075	C=0.4925
The PAGE Study	NativeHawaiian	Sub	4534	T=0.4618	C=0.5382
The PAGE Study	Cuban	Sub	4230	T=0.4064	C=0.5936
The PAGE Study	Dominican	Sub	3828	T=0.5964	C=0.4036
The PAGE Study	CentralAmerican	Sub	2448	T=0.5151	C=0.4849
The PAGE Study	SouthAmerican	Sub	1982	T=0.4919	C=0.5081
The PAGE Study	NativeAmerican	Sub	1260	T=0.3857	C=0.6143
The PAGE Study	SouthAsian	Sub	856	T=0.571	C=0.429
14KJPN	JAPANESE	Study-wide	28258	T=0.77376	C=0.22624
8.3KJPN	JAPANESE	Study-wide	16760	T=0.77309	C=0.22691
1000Genomes_30x	Global	Study-wide	6404	T=0.6290	C=0.3710
1000Genomes_30x	African	Sub	1786	T=0.9020	C=0.0980
1000Genomes_30x	Europe	Sub	1266	T=0.3191	C=0.6809
1000Genomes_30x	South Asian	Sub	1202	T=0.5965	C=0.4035
1000Genomes_30x	East Asian	Sub	1170	T=0.7248	C=0.2752
1000Genomes_30x	American	Sub	980	T=0.457	C=0.543
1000Genomes	Global	Study-wide	5008	T=0.6244	C=0.3756
1000Genomes	African	Sub	1322	T=0.8986	C=0.1014
1000Genomes	East Asian	Sub	1008	T=0.7252	C=0.2748
1000Genomes	Europe	Sub	1006	T=0.3121	C=0.6879
1000Genomes	South Asian	Sub	978	T=0.588	C=0.412
1000Genomes	American	Sub	694	T=0.460	C=0.540
Genetic variation in the Estonian population	Estonian	Study-wide	4480	T=0.3261	C=0.6739
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.2929	C=0.7071
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.2861	C=0.7139
KOREAN population from KRGDB	KOREAN	Study-wide	2930	T=0.7597	A=0.0000, C=0.2403
HGDP-CEPH-db Supplement 1	Global	Study-wide	2084	T=0.5600	C=0.4400
HGDP-CEPH-db Supplement 1	Est_Asia	Sub	470	T=0.679	C=0.321
HGDP-CEPH-db Supplement 1	Central_South_Asia	Sub	414	T=0.502	C=0.498
HGDP-CEPH-db Supplement 1	Middle_Est	Sub	350	T=0.451	C=0.549
HGDP-CEPH-db Supplement 1	Europe	Sub	320	T=0.312	C=0.688
HGDP-CEPH-db Supplement 1	Africa	Sub	242	T=0.942	C=0.058
HGDP-CEPH-db Supplement 1	America	Sub	216	T=0.477	C=0.523
HGDP-CEPH-db Supplement 1	Oceania	Sub	72	T=0.71	C=0.29
HapMap	Global	Study-wide	1892	T=0.6691	C=0.3309
HapMap	American	Sub	770	T=0.536	C=0.464
HapMap	African	Sub	692	T=0.899	C=0.101
HapMap	Asian	Sub	254	T=0.736	C=0.264
HapMap	Europe	Sub	176	T=0.250	C=0.750
Korean Genome Project	KOREAN	Study-wide	1832	T=0.7800	C=0.2200
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	T=0.285	C=0.715
CNV burdens in cranial meningiomas	Global	Study-wide	790	T=0.692	C=0.308
CNV burdens in cranial meningiomas	CRM	Sub	790	T=0.692	C=0.308
Northern Sweden	ACPOP	Study-wide	600	T=0.310	C=0.690
Medical Genome Project healthy controls from Spanish population	Spanish controls	Study-wide	534	T=0.891	C=0.109
SGDP_PRJ	Global	Study-wide	346	T=0.341	C=0.659
Qatari	Global	Study-wide	216	T=0.472	C=0.528
A Vietnamese Genetic Variation Database	Global	Study-wide	212	T=0.684	C=0.316
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	56	T=0.25	C=0.75
Siberian	Global	Study-wide	46	T=0.33	C=0.67
The Danish reference pan genome	Danish	Study-wide	40	T=0.30	C=0.70

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 19	NC_000019.10:g.47093845T>A
GRCh38.p14 chr 19	NC_000019.10:g.47093845T>C
GRCh37.p13 chr 19	NC_000019.9:g.47597102T>A
GRCh37.p13 chr 19	NC_000019.9:g.47597102T>C
ZC3H4 RefSeqGene	NG_027798.1:g.24908A>T
ZC3H4 RefSeqGene	NG_027798.1:g.24908A>G

Gene: ZC3H4, zinc finger CCCH-type containing 4 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
ZC3H4 transcript	NM_015168.2:c.492+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X2	XM_005258676.4:c.384+125A… XM_005258676.4:c.384+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X3	XM_005258677.5:c.369+125A… XM_005258677.5:c.369+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X6	XM_005258678.3:c.345+125A… XM_005258678.3:c.345+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X1	XM_006723113.4:c.492+125A… XM_006723113.4:c.492+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X4	XM_011526668.4:c.369+125A… XM_011526668.4:c.369+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X5	XM_011526669.4:c.354+125A… XM_011526669.4:c.354+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X7	XM_011526670.4:c.342+125A… XM_011526670.4:c.342+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X8	XM_017026530.3:c.492+125A… XM_017026530.3:c.492+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X9	XM_047438514.1:c.384+125A… XM_047438514.1:c.384+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X10	XM_047438515.1:c.354+125A… XM_047438515.1:c.354+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X11	XM_047438516.1:c.345+125A… XM_047438516.1:c.345+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X12	XM_047438517.1:c.-61+125A… XM_047438517.1:c.-61+125A>T	N/A	Intron Variant
ZC3H4 transcript variant X13	XM_047438518.1:c.	N/A	Genic Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	T=	A	C
GRCh38.p14 chr 19	NC_000019.10:g.47093845=	NC_000019.10:g.47093845T>A	NC_000019.10:g.47093845T>C
GRCh37.p13 chr 19	NC_000019.9:g.47597102=	NC_000019.9:g.47597102T>A	NC_000019.9:g.47597102T>C
ZC3H4 RefSeqGene	NG_027798.1:g.24908=	NG_027798.1:g.24908A>T	NG_027798.1:g.24908A>G
ZC3H4 transcript	NM_015168.1:c.492+125=	NM_015168.1:c.492+125A>T	NM_015168.1:c.492+125A>G
ZC3H4 transcript	NM_015168.2:c.492+125=	NM_015168.2:c.492+125A>T	NM_015168.2:c.492+125A>G
ZC3H4 transcript variant X1	XM_005258676.1:c.384+125=	XM_005258676.1:c.384+125A>T	XM_005258676.1:c.384+125A>G
ZC3H4 transcript variant X2	XM_005258676.4:c.384+125=	XM_005258676.4:c.384+125A>T	XM_005258676.4:c.384+125A>G
ZC3H4 transcript variant X2	XM_005258677.1:c.369+125=	XM_005258677.1:c.369+125A>T	XM_005258677.1:c.369+125A>G
ZC3H4 transcript variant X3	XM_005258677.5:c.369+125=	XM_005258677.5:c.369+125A>T	XM_005258677.5:c.369+125A>G
ZC3H4 transcript variant X6	XM_005258678.1:c.345+125=	XM_005258678.1:c.345+125A>T	XM_005258678.1:c.345+125A>G
ZC3H4 transcript variant X6	XM_005258678.3:c.345+125=	XM_005258678.3:c.345+125A>T	XM_005258678.3:c.345+125A>G
ZC3H4 transcript variant X1	XM_006723113.4:c.492+125=	XM_006723113.4:c.492+125A>T	XM_006723113.4:c.492+125A>G
ZC3H4 transcript variant X4	XM_011526668.4:c.369+125=	XM_011526668.4:c.369+125A>T	XM_011526668.4:c.369+125A>G
ZC3H4 transcript variant X5	XM_011526669.4:c.354+125=	XM_011526669.4:c.354+125A>T	XM_011526669.4:c.354+125A>G
ZC3H4 transcript variant X7	XM_011526670.4:c.342+125=	XM_011526670.4:c.342+125A>T	XM_011526670.4:c.342+125A>G
ZC3H4 transcript variant X8	XM_017026530.3:c.492+125=	XM_017026530.3:c.492+125A>T	XM_017026530.3:c.492+125A>G
ZC3H4 transcript variant X9	XM_047438514.1:c.384+125=	XM_047438514.1:c.384+125A>T	XM_047438514.1:c.384+125A>G
ZC3H4 transcript variant X10	XM_047438515.1:c.354+125=	XM_047438515.1:c.354+125A>T	XM_047438515.1:c.354+125A>G
ZC3H4 transcript variant X11	XM_047438516.1:c.345+125=	XM_047438516.1:c.345+125A>T	XM_047438516.1:c.345+125A>G
ZC3H4 transcript variant X12	XM_047438517.1:c.-61+125=	XM_047438517.1:c.-61+125A>T	XM_047438517.1:c.-61+125A>G

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

154 SubSNP, 25 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	BCM_SSAHASNP	ss14700803	Dec 05, 2003 (119)
2	CSHL-HAPMAP	ss16801154	Feb 27, 2004 (120)
3	PERLEGEN	ss24432904	Sep 20, 2004 (123)
4	ABI	ss44165084	Mar 15, 2006 (126)
5	ILLUMINA	ss66600329	Dec 01, 2006 (127)
6	ILLUMINA	ss66881981	Dec 01, 2006 (127)
7	ILLUMINA	ss66974358	Dec 01, 2006 (127)
8	PERLEGEN	ss69229523	May 17, 2007 (127)
9	ILLUMINA	ss70365110	May 17, 2007 (127)
10	ILLUMINA	ss70477690	May 23, 2008 (130)
11	ILLUMINA	ss71000819	May 17, 2007 (127)
12	ILLUMINA	ss75452298	Dec 07, 2007 (129)
13	KRIBB_YJKIM	ss84934754	Dec 14, 2007 (130)
14	BCMHGSC_JDW	ss90990497	Mar 24, 2008 (129)
15	1000GENOMES	ss111443565	Jan 25, 2009 (130)
16	ILLUMINA	ss121302387	Dec 01, 2009 (131)
17	ENSEMBL	ss137702228	Dec 01, 2009 (131)
18	ILLUMINA	ss152719603	Dec 01, 2009 (131)
19	ILLUMINA	ss159122339	Dec 01, 2009 (131)
20	ILLUMINA	ss159890249	Dec 01, 2009 (131)
21	ENSEMBL	ss161881673	Dec 01, 2009 (131)
22	COMPLETE_GENOMICS	ss168270580	Jul 04, 2010 (132)
23	ILLUMINA	ss169374731	Jul 04, 2010 (132)
24	ILLUMINA	ss170032833	Jul 04, 2010 (132)
25	COMPLETE_GENOMICS	ss171800052	Jul 04, 2010 (132)
26	BCM-HGSC-SUB	ss208460756	Jul 04, 2010 (132)
27	1000GENOMES	ss228163459	Jul 14, 2010 (132)
28	1000GENOMES	ss237694615	Jul 15, 2010 (132)
29	1000GENOMES	ss243896505	Jul 15, 2010 (132)
30	BL	ss255713135	May 09, 2011 (134)
31	GMI	ss283229758	May 04, 2012 (137)
32	GMI	ss287390729	Apr 25, 2013 (138)
33	PJP	ss292186407	May 09, 2011 (134)
34	ILLUMINA	ss410886566	Sep 17, 2011 (135)
35	ILLUMINA	ss479258272	May 04, 2012 (137)
36	ILLUMINA	ss479261200	May 04, 2012 (137)
37	ILLUMINA	ss479626848	Sep 08, 2015 (146)
38	ILLUMINA	ss484429840	May 04, 2012 (137)
39	EXOME_CHIP	ss491550269	May 04, 2012 (137)
40	ILLUMINA	ss536602143	Sep 08, 2015 (146)
41	TISHKOFF	ss566017722	Apr 25, 2013 (138)
42	SSMP	ss661884369	Apr 25, 2013 (138)
43	ILLUMINA	ss778355025	Sep 08, 2015 (146)
44	ILLUMINA	ss780680419	Sep 08, 2015 (146)
45	ILLUMINA	ss782661376	Sep 08, 2015 (146)
46	ILLUMINA	ss783353696	Sep 08, 2015 (146)
47	ILLUMINA	ss783630371	Sep 08, 2015 (146)
48	ILLUMINA	ss825334841	Apr 01, 2015 (144)
49	ILLUMINA	ss831911888	Sep 08, 2015 (146)
50	ILLUMINA	ss832635061	Jul 13, 2019 (153)
51	ILLUMINA	ss833809753	Sep 08, 2015 (146)
52	EVA-GONL	ss994355643	Aug 21, 2014 (142)
53	JMKIDD_LAB	ss1081941520	Aug 21, 2014 (142)
54	1000GENOMES	ss1363392723	Aug 21, 2014 (142)
55	DDI	ss1428418228	Apr 01, 2015 (144)
56	EVA_GENOME_DK	ss1578659869	Apr 01, 2015 (144)
57	EVA_UK10K_ALSPAC	ss1638074958	Apr 01, 2015 (144)
58	EVA_UK10K_TWINSUK	ss1681068991	Apr 01, 2015 (144)
59	EVA_DECODE	ss1698410995	Apr 01, 2015 (144)
60	EVA_MGP	ss1711518835	Apr 01, 2015 (144)
61	EVA_SVP	ss1713665832	Apr 01, 2015 (144)
62	ILLUMINA	ss1752289453	Sep 08, 2015 (146)
63	ILLUMINA	ss1752289454	Sep 08, 2015 (146)
64	HAMMER_LAB	ss1809333154	Sep 08, 2015 (146)
65	ILLUMINA	ss1917939496	Feb 12, 2016 (147)
66	WEILL_CORNELL_DGM	ss1937853633	Feb 12, 2016 (147)
67	ILLUMINA	ss1946538451	Feb 12, 2016 (147)
68	ILLUMINA	ss1959872136	Feb 12, 2016 (147)
69	GENOMED	ss1968653244	Jul 19, 2016 (147)
70	JJLAB	ss2029703283	Sep 14, 2016 (149)
71	ILLUMINA	ss2094804190	Dec 20, 2016 (150)
72	ILLUMINA	ss2095085523	Dec 20, 2016 (150)
73	USC_VALOUEV	ss2158248349	Dec 20, 2016 (150)
74	HUMAN_LONGEVITY	ss2226147598	Dec 20, 2016 (150)
75	SYSTEMSBIOZJU	ss2629348720	Nov 08, 2017 (151)
76	ILLUMINA	ss2633546246	Nov 08, 2017 (151)
77	ILLUMINA	ss2633546247	Nov 08, 2017 (151)
78	ILLUMINA	ss2633546248	Nov 08, 2017 (151)
79	GRF	ss2702861414	Nov 08, 2017 (151)
80	GNOMAD	ss2963525363	Nov 08, 2017 (151)
81	AFFY	ss2985145653	Nov 08, 2017 (151)
82	AFFY	ss2985776365	Nov 08, 2017 (151)
83	SWEGEN	ss3017569715	Nov 08, 2017 (151)
84	ILLUMINA	ss3021914108	Nov 08, 2017 (151)
85	BIOINF_KMB_FNS_UNIBA	ss3028682003	Nov 08, 2017 (151)
86	CSHL	ss3352328459	Nov 08, 2017 (151)
87	ILLUMINA	ss3627945612	Oct 12, 2018 (152)
88	ILLUMINA	ss3627945613	Oct 12, 2018 (152)
89	ILLUMINA	ss3631517060	Oct 12, 2018 (152)
90	ILLUMINA	ss3633181971	Oct 12, 2018 (152)
91	ILLUMINA	ss3633892584	Oct 12, 2018 (152)
92	ILLUMINA	ss3634739244	Oct 12, 2018 (152)
93	ILLUMINA	ss3634739245	Oct 12, 2018 (152)
94	ILLUMINA	ss3635579315	Oct 12, 2018 (152)
95	ILLUMINA	ss3636426018	Oct 12, 2018 (152)
96	ILLUMINA	ss3637331070	Oct 12, 2018 (152)
97	ILLUMINA	ss3638231078	Oct 12, 2018 (152)
98	ILLUMINA	ss3639120876	Oct 12, 2018 (152)
99	ILLUMINA	ss3639571180	Oct 12, 2018 (152)
100	ILLUMINA	ss3640446552	Oct 12, 2018 (152)
101	ILLUMINA	ss3640446553	Oct 12, 2018 (152)
102	ILLUMINA	ss3643203485	Oct 12, 2018 (152)
103	ILLUMINA	ss3644726971	Oct 12, 2018 (152)
104	ILLUMINA	ss3652340486	Oct 12, 2018 (152)
105	ILLUMINA	ss3652340487	Oct 12, 2018 (152)
106	ILLUMINA	ss3653918483	Oct 12, 2018 (152)
107	EGCUT_WGS	ss3684313457	Jul 13, 2019 (153)
108	EVA_DECODE	ss3702880673	Jul 13, 2019 (153)
109	ILLUMINA	ss3725735631	Jul 13, 2019 (153)
110	ACPOP	ss3743087445	Jul 13, 2019 (153)
111	ILLUMINA	ss3744466749	Jul 13, 2019 (153)
112	ILLUMINA	ss3745039254	Jul 13, 2019 (153)
113	ILLUMINA	ss3745039255	Jul 13, 2019 (153)
114	EVA	ss3756131006	Jul 13, 2019 (153)
115	PAGE_CC	ss3772018620	Jul 13, 2019 (153)
116	ILLUMINA	ss3772536320	Jul 13, 2019 (153)
117	ILLUMINA	ss3772536321	Jul 13, 2019 (153)
118	PACBIO	ss3788546476	Jul 13, 2019 (153)
119	PACBIO	ss3793453802	Jul 13, 2019 (153)
120	PACBIO	ss3798340697	Jul 13, 2019 (153)
121	KHV_HUMAN_GENOMES	ss3821379232	Jul 13, 2019 (153)
122	EVA	ss3835489798	Apr 27, 2020 (154)
123	EVA	ss3841367786	Apr 27, 2020 (154)
124	EVA	ss3846873977	Apr 27, 2020 (154)
125	HGDP	ss3847600748	Apr 27, 2020 (154)
126	SGDP_PRJ	ss3888340949	Apr 27, 2020 (154)
127	KRGDB	ss3938476758	Apr 27, 2020 (154)
128	KOGIC	ss3981477385	Apr 27, 2020 (154)
129	FSA-LAB	ss3984157996	Apr 27, 2021 (155)
130	EVA	ss3984743148	Apr 27, 2021 (155)
131	EVA	ss3985856926	Apr 27, 2021 (155)
132	EVA	ss3986804553	Apr 27, 2021 (155)
133	EVA	ss4017827747	Apr 27, 2021 (155)
134	TOPMED	ss5076729236	Apr 27, 2021 (155)
135	TOMMO_GENOMICS	ss5228032002	Apr 27, 2021 (155)
136	EVA	ss5237248262	Apr 27, 2021 (155)
137	1000G_HIGH_COVERAGE	ss5307458652	Oct 13, 2022 (156)
138	EVA	ss5315978488	Oct 13, 2022 (156)
139	EVA	ss5435193462	Oct 13, 2022 (156)
140	HUGCELL_USP	ss5499945799	Oct 13, 2022 (156)
141	EVA	ss5512116294	Oct 13, 2022 (156)
142	1000G_HIGH_COVERAGE	ss5613279811	Oct 13, 2022 (156)
143	EVA	ss5624092043	Oct 13, 2022 (156)
144	SANFORD_IMAGENETICS	ss5662508573	Oct 13, 2022 (156)
145	TOMMO_GENOMICS	ss5786755767	Oct 13, 2022 (156)
146	EVA	ss5800010137	Oct 13, 2022 (156)
147	EVA	ss5800224256	Oct 13, 2022 (156)
148	YY_MCH	ss5817651335	Oct 13, 2022 (156)
149	EVA	ss5840630067	Oct 13, 2022 (156)
150	EVA	ss5848496827	Oct 13, 2022 (156)
151	EVA	ss5852310601	Oct 13, 2022 (156)
152	EVA	ss5928323007	Oct 13, 2022 (156)
153	EVA	ss5936574624	Oct 13, 2022 (156)
154	EVA	ss5953918160	Oct 13, 2022 (156)
155	1000Genomes	NC_000019.9 - 47597102	Oct 12, 2018 (152)
156	1000Genomes_30x	NC_000019.10 - 47093845	Oct 13, 2022 (156)
157	The Avon Longitudinal Study of Parents and Children	NC_000019.9 - 47597102	Oct 12, 2018 (152)
158	Genetic variation in the Estonian population	NC_000019.9 - 47597102	Oct 12, 2018 (152)
159	The Danish reference pan genome	NC_000019.9 - 47597102	Apr 27, 2020 (154)
160	gnomAD - Genomes	NC_000019.10 - 47093845	Apr 27, 2021 (155)
161	Genome of the Netherlands Release 5	NC_000019.9 - 47597102	Apr 27, 2020 (154)
162	HGDP-CEPH-db Supplement 1	NC_000019.8 - 52288942	Apr 27, 2020 (154)
163	HapMap	NC_000019.10 - 47093845	Apr 27, 2020 (154)
164	KOREAN population from KRGDB	NC_000019.9 - 47597102	Apr 27, 2020 (154)
165	Korean Genome Project	NC_000019.10 - 47093845	Apr 27, 2020 (154)
166	Medical Genome Project healthy controls from Spanish population	NC_000019.9 - 47597102	Apr 27, 2020 (154)
167	Northern Sweden	NC_000019.9 - 47597102	Jul 13, 2019 (153)
168	The PAGE Study	NC_000019.10 - 47093845	Jul 13, 2019 (153)
169	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000019.9 - 47597102	Apr 27, 2021 (155)
170	CNV burdens in cranial meningiomas	NC_000019.9 - 47597102	Apr 27, 2021 (155)
171	Qatari	NC_000019.9 - 47597102	Apr 27, 2020 (154)
172	SGDP_PRJ	NC_000019.9 - 47597102	Apr 27, 2020 (154)
173	Siberian	NC_000019.9 - 47597102	Apr 27, 2020 (154)
174	8.3KJPN	NC_000019.9 - 47597102	Apr 27, 2021 (155)
175	14KJPN	NC_000019.10 - 47093845	Oct 13, 2022 (156)
176	TopMed	NC_000019.10 - 47093845	Apr 27, 2021 (155)
177	UK 10K study - Twins	NC_000019.9 - 47597102	Oct 12, 2018 (152)
178	A Vietnamese Genetic Variation Database	NC_000019.9 - 47597102	Jul 13, 2019 (153)
179	ALFA	NC_000019.10 - 47093845	Apr 27, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs17369087	Oct 08, 2004 (123)
rs57567628	May 23, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
45654152, ss3938476758	NC_000019.9:47597101:T:A	NC_000019.10:47093844:T:A	(self)
278640, ss90990497, ss111443565, ss168270580, ss171800052, ss208460756, ss255713135, ss283229758, ss287390729, ss292186407, ss479258272, ss825334841, ss1698410995, ss1713665832, ss3639120876, ss3639571180, ss3643203485, ss3847600748	NC_000019.8:52288941:T:C	NC_000019.10:47093844:T:C	(self)
76807797, 42529236, 30051705, 4841630, 18945482, 45654152, 634595, 16372310, 1082853, 292710, 19895555, 40357929, 10764703, 86001309, 42529236, 9390271, ss228163459, ss237694615, ss243896505, ss479261200, ss479626848, ss484429840, ss491550269, ss536602143, ss566017722, ss661884369, ss778355025, ss780680419, ss782661376, ss783353696, ss783630371, ss831911888, ss832635061, ss833809753, ss994355643, ss1081941520, ss1363392723, ss1428418228, ss1578659869, ss1638074958, ss1681068991, ss1711518835, ss1752289453, ss1752289454, ss1809333154, ss1917939496, ss1937853633, ss1946538451, ss1959872136, ss1968653244, ss2029703283, ss2094804190, ss2095085523, ss2158248349, ss2629348720, ss2633546246, ss2633546247, ss2633546248, ss2702861414, ss2963525363, ss2985145653, ss2985776365, ss3017569715, ss3021914108, ss3352328459, ss3627945612, ss3627945613, ss3631517060, ss3633181971, ss3633892584, ss3634739244, ss3634739245, ss3635579315, ss3636426018, ss3637331070, ss3638231078, ss3640446552, ss3640446553, ss3644726971, ss3652340486, ss3652340487, ss3653918483, ss3684313457, ss3743087445, ss3744466749, ss3745039254, ss3745039255, ss3756131006, ss3772536320, ss3772536321, ss3788546476, ss3793453802, ss3798340697, ss3835489798, ss3841367786, ss3888340949, ss3938476758, ss3984157996, ss3984743148, ss3985856926, ss3986804553, ss4017827747, ss5228032002, ss5315978488, ss5435193462, ss5512116294, ss5624092043, ss5662508573, ss5800010137, ss5800224256, ss5840630067, ss5848496827, ss5936574624, ss5953918160	NC_000019.9:47597101:T:C	NC_000019.10:47093844:T:C	(self)
100805746, 541683771, 1703870, 37855386, 1240089, 120592871, 292274900, 6996585486, ss2226147598, ss3028682003, ss3702880673, ss3725735631, ss3772018620, ss3821379232, ss3846873977, ss3981477385, ss5076729236, ss5237248262, ss5307458652, ss5499945799, ss5613279811, ss5786755767, ss5817651335, ss5852310601, ss5928323007	NC_000019.10:47093844:T:C	NC_000019.10:47093844:T:C	(self)
ss14700803, ss16801154	NT_011109.15:19865319:T:C	NC_000019.10:47093844:T:C	(self)
ss24432904, ss44165084, ss66600329, ss66881981, ss66974358, ss69229523, ss70365110, ss70477690, ss71000819, ss75452298, ss84934754, ss121302387, ss137702228, ss152719603, ss159122339, ss159890249, ss161881673, ss169374731, ss170032833, ss410886566	NT_011109.16:19865319:T:C	NC_000019.10:47093844:T:C	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

1 citation for rs10408163

PMID	Title	Author	Year	Journal
27351487	Obesity and Multiple Sclerosis: A Mendelian Randomization Study.	Mokry LE et al.	2016	PLoS medicine

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs10408163