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Reference SNP (refSNP) Cluster Report: rs84190043                 
RefSNP
Organism:zebra_finch (Taeniopygia guttata)
Molecule Type:Genomic
Created/Updated in build:131/139
Map to Genome Build:101/Weight
Validation Status:
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:Not available
MAF/MinorAlleleCount:NA
MAF Source:
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss181339382 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs84190043 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss181339382ENSEMBL|temptgu999989fwd/BC/Ttatttggtctaatgcctcctgtgcatttattcaaaccaactggaaactgcagtgatcatg11/20/0912/01/09131Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs84190043|allelePos=401|totalLen=801|taxid=59729|snpclass=1|alleles='C/T'|mol=Genomic|build=131
 ATGAGGTGTG AACACCATTC TGAGATCTCT CCAAATCCCA CCACATCTGG GCAGATCTTT
 ACATGTTTTT AAAAATACAT AAGATACCAA TGAATTTTGC TATTTCCAAC GTAAGAAGTG
 TCTGACTGGA TCAGCTTCAC ACCTCACTGA TGCAGACAGG CAGGAGCACC CTGAACAGAT
 GGAGTGCTGG ATCTTTTCTA CAGCTGGGTT AATCCTTATG CTCCCATTTT TATTTTTTCT
 TACAAGCACA TACCAGAAAC AAATAGATCA AACTGCCGTT CACCCATTTC CCCCCAAAGC
 TTTGCCAGCA GTTTCCTGTC AGAGTTCTCC AAATTCCTAG GTCTACTTCT GATGCCTTAA
 TAAATTCAGA TATTTGGTCT AATGCCTCCT GTGCATTTAT
 Y
 TCAAACCAAC TGGAAACTGC AGTGATCATG CTCAGAGTAT TTTATAACTG AACCCCTGCT
 CTGGCAAGAG CAGCTCTCCA CTGTTTTGGA TTTCCCAATG CCTTGGAAAA CTTGGATCAC
 TCAGTCTGTT TGATTTTTAT GAATTAAGAG TCCTAAAGGT TGATCTGTTC AGCTCTCCTC
 CCCAGTTATT GTACAATACT TCACAAATTA TATTCACAAA CGGATATATT AATTCATAAT
 TTTGCATGTA AGACTTTATC AAGAGTTTAG TACAACTTAA GCCCCACTTA GTTCTGCTTA
 AGTTCACTCA TCCAGATAAC GCAACTTCAT AATAAAATCA AGCTGCTTCT ACACAAACAC
 CTATTATTGT CTTGCCAATA AAATTACAAA ATAATTGAAA

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (in rs orientation) back to top

Sample AscertainmentGenotype DetailAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceC/T
HWPC
T
ss181339382ENSEMBL_Zebrafinch 2IG 1.000 0.500 0.500

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.500+/-01000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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