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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs770146143

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr8:132871519 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
A>G
Variation Type
SNV Single Nucleotide Variation
Frequency
G=0.000004 (1/250916, GnomAD_exome)
G=0.000008 (1/121006, ExAC)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
TG : Missense Variant
Publications
0 citations
Genomic View
See rs on genome
Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
gnomAD - Exomes Global Study-wide 250916 A=0.999996 G=0.000004
gnomAD - Exomes European Sub 134916 A=1.000000 G=0.000000
gnomAD - Exomes Asian Sub 49000 A=0.99998 G=0.00002
gnomAD - Exomes American Sub 34574 A=1.00000 G=0.00000
gnomAD - Exomes African Sub 16236 A=1.00000 G=0.00000
gnomAD - Exomes Ashkenazi Jewish Sub 10068 A=1.00000 G=0.00000
gnomAD - Exomes Other Sub 6122 A=1.0000 G=0.0000
ExAC Global Study-wide 121006 A=0.999992 G=0.000008
ExAC Europe Sub 73072 A=1.00000 G=0.00000
ExAC Asian Sub 25144 A=0.99996 G=0.00004
ExAC American Sub 11542 A=1.00000 G=0.00000
ExAC African Sub 10346 A=1.00000 G=0.00000
ExAC Other Sub 902 A=1.000 G=0.000
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 8 NC_000008.11:g.132871519A>G
GRCh37.p13 chr 8 NC_000008.10:g.133883764A>G
TG RefSeqGene NG_015832.2:g.9563A>G
TG RefSeqGene NG_015832.1:g.9560A>G
Gene: TG, thyroglobulin (plus strand)
Molecule type Change Amino acid[Codon] SO Term
TG transcript NM_003235.5:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin precursor NP_003226.4:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X1 XM_006716622.4:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X1 XP_006716685.1:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X2 XM_017013793.2:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X2 XP_016869282.1:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X3 XM_017013794.2:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X3 XP_016869283.1:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X4 XM_017013795.2:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X4 XP_016869284.1:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X5 XM_005251038.5:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X5 XP_005251095.1:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X6 XM_017013796.2:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X6 XP_016869285.1:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X7 XM_047422166.1:c.185A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X7 XP_047278122.1:p.Tyr62Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X8 XM_017013798.2:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X8 XP_016869287.1:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X9 XM_005251040.5:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X9 XP_005251097.1:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X10 XM_017013799.2:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X10 XP_016869288.1:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X11 XM_005251042.5:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X11 XP_005251099.1:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
TG transcript variant X12 XM_017013800.2:c.446A>G Y [TAT] > C [TGT] Coding Sequence Variant
thyroglobulin isoform X12 XP_016869289.1:p.Tyr149Cys Y (Tyr) > C (Cys) Missense Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement A= G
GRCh38.p14 chr 8 NC_000008.11:g.132871519= NC_000008.11:g.132871519A>G
GRCh37.p13 chr 8 NC_000008.10:g.133883764= NC_000008.10:g.133883764A>G
TG RefSeqGene NG_015832.2:g.9563= NG_015832.2:g.9563A>G
TG RefSeqGene NG_015832.1:g.9560= NG_015832.1:g.9560A>G
TG transcript NM_003235.5:c.446= NM_003235.5:c.446A>G
TG transcript NM_003235.4:c.446= NM_003235.4:c.446A>G
TG transcript variant X5 XM_005251038.5:c.446= XM_005251038.5:c.446A>G
TG transcript variant X5 XM_005251038.4:c.446= XM_005251038.4:c.446A>G
TG transcript variant X2 XM_005251038.3:c.446= XM_005251038.3:c.446A>G
TG transcript variant X4 XM_005251038.2:c.446= XM_005251038.2:c.446A>G
TG transcript variant X4 XM_005251038.1:c.446= XM_005251038.1:c.446A>G
TG transcript variant X9 XM_005251040.5:c.446= XM_005251040.5:c.446A>G
TG transcript variant X9 XM_005251040.4:c.446= XM_005251040.4:c.446A>G
TG transcript variant X3 XM_005251040.3:c.446= XM_005251040.3:c.446A>G
TG transcript variant X6 XM_005251040.2:c.446= XM_005251040.2:c.446A>G
TG transcript variant X6 XM_005251040.1:c.446= XM_005251040.1:c.446A>G
TG transcript variant X11 XM_005251042.5:c.446= XM_005251042.5:c.446A>G
TG transcript variant X11 XM_005251042.4:c.446= XM_005251042.4:c.446A>G
TG transcript variant X4 XM_005251042.3:c.446= XM_005251042.3:c.446A>G
TG transcript variant X8 XM_005251042.2:c.446= XM_005251042.2:c.446A>G
TG transcript variant X8 XM_005251042.1:c.446= XM_005251042.1:c.446A>G
TG transcript variant X1 XM_006716622.4:c.446= XM_006716622.4:c.446A>G
TG transcript variant X1 XM_006716622.3:c.446= XM_006716622.3:c.446A>G
TG transcript variant X1 XM_006716622.2:c.446= XM_006716622.2:c.446A>G
TG transcript variant X10 XM_006716622.1:c.446= XM_006716622.1:c.446A>G
TG transcript variant X2 XM_017013793.2:c.446= XM_017013793.2:c.446A>G
TG transcript variant X2 XM_017013793.1:c.446= XM_017013793.1:c.446A>G
TG transcript variant X3 XM_017013794.2:c.446= XM_017013794.2:c.446A>G
TG transcript variant X3 XM_017013794.1:c.446= XM_017013794.1:c.446A>G
TG transcript variant X4 XM_017013795.2:c.446= XM_017013795.2:c.446A>G
TG transcript variant X4 XM_017013795.1:c.446= XM_017013795.1:c.446A>G
TG transcript variant X6 XM_017013796.2:c.446= XM_017013796.2:c.446A>G
TG transcript variant X6 XM_017013796.1:c.446= XM_017013796.1:c.446A>G
TG transcript variant X8 XM_017013798.2:c.446= XM_017013798.2:c.446A>G
TG transcript variant X8 XM_017013798.1:c.446= XM_017013798.1:c.446A>G
TG transcript variant X12 XM_017013800.2:c.446= XM_017013800.2:c.446A>G
TG transcript variant X12 XM_017013800.1:c.446= XM_017013800.1:c.446A>G
TG transcript variant X10 XM_017013799.2:c.446= XM_017013799.2:c.446A>G
TG transcript variant X10 XM_017013799.1:c.446= XM_017013799.1:c.446A>G
TG transcript variant X7 XM_047422166.1:c.185= XM_047422166.1:c.185A>G
thyroglobulin precursor NP_003226.4:p.Tyr149= NP_003226.4:p.Tyr149Cys
thyroglobulin isoform X5 XP_005251095.1:p.Tyr149= XP_005251095.1:p.Tyr149Cys
thyroglobulin isoform X9 XP_005251097.1:p.Tyr149= XP_005251097.1:p.Tyr149Cys
thyroglobulin isoform X11 XP_005251099.1:p.Tyr149= XP_005251099.1:p.Tyr149Cys
thyroglobulin isoform X1 XP_006716685.1:p.Tyr149= XP_006716685.1:p.Tyr149Cys
thyroglobulin isoform X2 XP_016869282.1:p.Tyr149= XP_016869282.1:p.Tyr149Cys
thyroglobulin isoform X3 XP_016869283.1:p.Tyr149= XP_016869283.1:p.Tyr149Cys
thyroglobulin isoform X4 XP_016869284.1:p.Tyr149= XP_016869284.1:p.Tyr149Cys
thyroglobulin isoform X6 XP_016869285.1:p.Tyr149= XP_016869285.1:p.Tyr149Cys
thyroglobulin isoform X8 XP_016869287.1:p.Tyr149= XP_016869287.1:p.Tyr149Cys
thyroglobulin isoform X12 XP_016869289.1:p.Tyr149= XP_016869289.1:p.Tyr149Cys
thyroglobulin isoform X10 XP_016869288.1:p.Tyr149= XP_016869288.1:p.Tyr149Cys
thyroglobulin isoform X7 XP_047278122.1:p.Tyr62= XP_047278122.1:p.Tyr62Cys
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

3 SubSNP, 2 Frequency submissions
No Submitter Submission ID Date (Build)
1 EVA_EXAC ss1689322210 Apr 01, 2015 (144)
2 GNOMAD ss2737355524 Nov 08, 2017 (151)
3 ILLUMINA ss3625971542 Oct 12, 2018 (152)
4 ExAC NC_000008.10 - 133883764 Oct 12, 2018 (152)
5 gnomAD - Exomes NC_000008.10 - 133883764 Jul 13, 2019 (153)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
9433480, 6531104, ss1689322210, ss2737355524, ss3625971542 NC_000008.10:133883763:A:G NC_000008.11:132871518:A:G (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs770146143

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post761+d5e8e07