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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs762098236

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr2:127426139 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
T>C
Variation Type
SNV Single Nucleotide Variation
Frequency
C=0.000004 (1/251424, GnomAD_exome)
C=0.000008 (1/121218, ExAC)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
PROC : Missense Variant
LOC105373608 : Non Coding Transcript Variant
Publications
0 citations
Genomic View
See rs on genome
Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
gnomAD - Exomes Global Study-wide 251424 T=0.999996 C=0.000004
gnomAD - Exomes European Sub 135364 T=0.999993 C=0.000007
gnomAD - Exomes Asian Sub 49008 T=1.00000 C=0.00000
gnomAD - Exomes American Sub 34590 T=1.00000 C=0.00000
gnomAD - Exomes African Sub 16252 T=1.00000 C=0.00000
gnomAD - Exomes Ashkenazi Jewish Sub 10074 T=1.00000 C=0.00000
gnomAD - Exomes Other Sub 6136 T=1.0000 C=0.0000
ExAC Global Study-wide 121218 T=0.999992 C=0.000008
ExAC Europe Sub 73214 T=0.99999 C=0.00001
ExAC Asian Sub 25164 T=1.00000 C=0.00000
ExAC American Sub 11568 T=1.00000 C=0.00000
ExAC African Sub 10368 T=1.00000 C=0.00000
ExAC Other Sub 904 T=1.000 C=0.000
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 2 NC_000002.12:g.127426139T>C
GRCh37.p13 chr 2 NC_000002.11:g.128183715T>C
PROC RefSeqGene (LRG_599) NG_016323.1:g.12720T>C
Gene: PROC, protein C, inactivator of coagulation factors Va and VIIIa (plus strand)
Molecule type Change Amino acid[Codon] SO Term
PROC transcript variant 7 NM_001375610.1:c.584T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 7 preproprotein NP_001362539.1:p.Leu195Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant 12 NM_001375613.1:c.590T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 10 preproprotein NP_001362542.1:p.Leu197Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant 6 NM_001375604.1:c.653T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 6 precursor NP_001362533.1:p.Leu218Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant 11 NM_001375611.1:c.590T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 10 preproprotein NP_001362540.1:p.Leu197Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant 3 NM_001375606.1:c.758T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 3 precursor NP_001362535.1:p.Leu253Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant 9 NM_001375608.1:c.533T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 9 precursor NP_001362537.1:p.Leu178Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant 1 NM_001375607.1:c.776T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 1 NP_001362536.1:p.Leu259Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant 8 NM_001375609.1:c.566T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 8 NP_001362538.1:p.Leu189Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant 4 NM_001375603.1:c.755T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 4 precursor NP_001362532.1:p.Leu252Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant 5 NM_001375605.1:c.692T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 5 preproprotein NP_001362534.1:p.Leu231Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant 2 NM_001375602.1:c.773T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 2 NP_001362531.1:p.Leu258Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant 10 NM_000312.4:c.590T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform 10 preproprotein NP_000303.1:p.Leu197Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant X1 XM_024453002.2:c.275T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform X1 XP_024308770.2:p.Leu92Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant X2 XM_024453003.2:c.875T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform X2 XP_024308771.1:p.Leu292Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant X3 XM_017004505.2:c.23T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform X3 XP_016859994.2:p.Leu8Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant X4 XM_047445117.1:c.779T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform X4 XP_047301073.1:p.Leu260Pro L (Leu) > P (Pro) Missense Variant
PROC transcript variant X5 XM_047445118.1:c.275T>C L [CTG] > P [CCG] Coding Sequence Variant
vitamin K-dependent protein C isoform X1 XP_047301074.1:p.Leu92Pro L (Leu) > P (Pro) Missense Variant
Gene: LOC105373608, uncharacterized LOC105373608 (minus strand)
Molecule type Change Amino acid[Codon] SO Term
LOC105373608 transcript XR_007087228.1:n.3166A>G N/A Non Coding Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement T= C
GRCh38.p14 chr 2 NC_000002.12:g.127426139= NC_000002.12:g.127426139T>C
GRCh37.p13 chr 2 NC_000002.11:g.128183715= NC_000002.11:g.128183715T>C
PROC RefSeqGene (LRG_599) NG_016323.1:g.12720= NG_016323.1:g.12720T>C
PROC transcript variant 10 NM_000312.4:c.590= NM_000312.4:c.590T>C
PROC transcript variant 10 NM_000312.3:c.590= NM_000312.3:c.590T>C
PROC transcript variant 12 NM_001375613.1:c.590= NM_001375613.1:c.590T>C
PROC transcript variant 1 NM_001375607.1:c.776= NM_001375607.1:c.776T>C
PROC transcript variant 2 NM_001375602.1:c.773= NM_001375602.1:c.773T>C
PROC transcript variant 5 NM_001375605.1:c.692= NM_001375605.1:c.692T>C
PROC transcript variant 3 NM_001375606.1:c.758= NM_001375606.1:c.758T>C
PROC transcript variant 4 NM_001375603.1:c.755= NM_001375603.1:c.755T>C
PROC transcript variant 11 NM_001375611.1:c.590= NM_001375611.1:c.590T>C
PROC transcript variant 6 NM_001375604.1:c.653= NM_001375604.1:c.653T>C
PROC transcript variant 7 NM_001375610.1:c.584= NM_001375610.1:c.584T>C
PROC transcript variant 9 NM_001375608.1:c.533= NM_001375608.1:c.533T>C
PROC transcript variant 8 NM_001375609.1:c.566= NM_001375609.1:c.566T>C
PROC transcript variant X2 XM_024453003.2:c.875= XM_024453003.2:c.875T>C
PROC transcript variant X2 XM_024453003.1:c.875= XM_024453003.1:c.875T>C
PROC transcript variant X1 XM_024453002.2:c.275= XM_024453002.2:c.275T>C
PROC transcript variant X1 XM_024453002.1:c.935= XM_024453002.1:c.935T>C
PROC transcript variant X3 XM_017004505.2:c.23= XM_017004505.2:c.23T>C
PROC transcript variant X3 XM_017004505.1:c.833= XM_017004505.1:c.833T>C
LOC105373608 transcript XR_007087228.1:n.3166= XR_007087228.1:n.3166A>G
PROC transcript variant X4 XM_047445117.1:c.779= XM_047445117.1:c.779T>C
PROC transcript variant X5 XM_047445118.1:c.275= XM_047445118.1:c.275T>C
vitamin K-dependent protein C isoform 10 preproprotein NP_000303.1:p.Leu197= NP_000303.1:p.Leu197Pro
vitamin K-dependent protein C isoform 10 preproprotein NP_001362542.1:p.Leu197= NP_001362542.1:p.Leu197Pro
vitamin K-dependent protein C isoform 1 NP_001362536.1:p.Leu259= NP_001362536.1:p.Leu259Pro
vitamin K-dependent protein C isoform 2 NP_001362531.1:p.Leu258= NP_001362531.1:p.Leu258Pro
vitamin K-dependent protein C isoform 5 preproprotein NP_001362534.1:p.Leu231= NP_001362534.1:p.Leu231Pro
vitamin K-dependent protein C isoform 3 precursor NP_001362535.1:p.Leu253= NP_001362535.1:p.Leu253Pro
vitamin K-dependent protein C isoform 4 precursor NP_001362532.1:p.Leu252= NP_001362532.1:p.Leu252Pro
vitamin K-dependent protein C isoform 10 preproprotein NP_001362540.1:p.Leu197= NP_001362540.1:p.Leu197Pro
vitamin K-dependent protein C isoform 6 precursor NP_001362533.1:p.Leu218= NP_001362533.1:p.Leu218Pro
vitamin K-dependent protein C isoform 7 preproprotein NP_001362539.1:p.Leu195= NP_001362539.1:p.Leu195Pro
vitamin K-dependent protein C isoform 9 precursor NP_001362537.1:p.Leu178= NP_001362537.1:p.Leu178Pro
vitamin K-dependent protein C isoform 8 NP_001362538.1:p.Leu189= NP_001362538.1:p.Leu189Pro
vitamin K-dependent protein C isoform X2 XP_024308771.1:p.Leu292= XP_024308771.1:p.Leu292Pro
vitamin K-dependent protein C isoform X1 XP_024308770.2:p.Leu92= XP_024308770.2:p.Leu92Pro
vitamin K-dependent protein C isoform X3 XP_016859994.2:p.Leu8= XP_016859994.2:p.Leu8Pro
vitamin K-dependent protein C isoform X4 XP_047301073.1:p.Leu260= XP_047301073.1:p.Leu260Pro
vitamin K-dependent protein C isoform X1 XP_047301074.1:p.Leu92= XP_047301074.1:p.Leu92Pro
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

2 SubSNP, 2 Frequency submissions
No Submitter Submission ID Date (Build)
1 EVA_EXAC ss1686496697 Apr 01, 2015 (144)
2 GNOMAD ss2732958773 Nov 08, 2017 (151)
3 ExAC NC_000002.11 - 128183715 Oct 11, 2018 (152)
4 gnomAD - Exomes NC_000002.11 - 128183715 Jul 13, 2019 (153)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
6382295, 2015675, ss1686496697, ss2732958773 NC_000002.11:128183714:T:C NC_000002.12:127426138:T:C (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs762098236

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post761+d5e8e07