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Reference SNP (refSNP) Cluster Report: rs59871418                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:129/144
Map to Genome Build:107/Weight
Validation Status:byClusterbyFreqWith1000GenomeData
Allele
Variation Class:DIV:
deletion/insertion variation
RefSNP Alleles:-/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:unknown
Clinical Significance:NA
MAF/MinorAlleleCount:-=0.0196/98
MAF Source:1000 Genomes
HGVS Names
  • NC_000001.10:g.30208123delT
  • NC_000001.11:g.29735276delT
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss83325370 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs59871418 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss83325370HGSV|Cor18517_DIV_20070510.chr1_29877221-29877223_1fwd/-/Tatcaccacatgtggcgaatttttattttttgtagagatggggttttgctatgttgcccag12/04/0712/04/07129Genomicunknown
ss3260244521000GENOMES|YRI_chr1_29980709_indelfwd/-/Tgtgctcatcaccacatgtggcgaatttttattttttgtagagatggggttttgctatgtt03/11/1104/01/11137Genomicunknown
ss4988177621000GENOMES|20110316_indels_chr1_30208122_30208122fwd/-/Tcatcaccacatgtggcgaatttttattttttgtagagatggggttttgct03/19/1203/19/12137Genomicunknown
ss550920595LUNTER|YRI_1_29980710-29980710fwd/-/Tcatcaccacatgtggcgaatttttattttttgtagagatggggttttgct11/21/1211/21/12138Genomic95 %
ss553722389TISHKOFF|del_chr1_30208129-30208129fwd/-/Tcacatgtggcgaatttttattttttgtagagatggggttttgctatgttg11/22/1211/22/12138Genomicunknown
ss663180190SSMP|indel_1_30208123fwd/-/Tcatcaccacatgtggcgaatttttattttttgtagagatggggttttgct12/18/1202/09/15144Genomicunknown
ss13676798211000GENOMES|PHASE3_V1_905639fwd/-/Tcatcaccacatgtggcgaatttttattttttgtagagatggggttttgct08/16/1408/17/14142Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs59871418|allelePos=501|totalLen=819|taxid=9606|snpclass=2|alleles='-/T'|mol=Genomic|build=144
 AGGCCAGGTC CCTTTTGCTG TTCCACACGT GAGTTGGAAG CTCAGGCCTC AGGCTTCCAG
 CACAAAAACC TTAGAAGTAT GGGTTGTGAG CAAAGAGCAA GGTACAGAAG GAAAATGAGA
 AAGAGTGGGG GTCAGGGGAG AGGCGGGGAG AGGACAGGTT TCTATCTTTA GTACAAAATG
 TCAAAAGCAT GGGCTCTAGA AATGGAGAAA CCTGAAATCA AAGGCTGGCT TCATTACTCA
 CTAATTCAGT GACTAATTCA GAGATAGTTA CCCAGTTCTA ATTCTGTTTT CATATTCATA
 AAATGGAAAT GAGAATGGCA TCACTTTTTT TCTTTTTAAG AGATAGGATC TTGCTCTGTT
 GCTTAGACTG GAGTGCAGTG GCATGACCAT AGCTCACTGC AGCCTTGACC TCCTGGACTC
 AGGGGATCCT CCTGCCTTAG CCTCCCGAGT AGTTAGGACT TCAGGTGCTC ATCACCACAT
 GTGGCGAATT TTTATTTTTT
 N
 GTAGAGATGG GGTTTTGCTA TGTTGCCCAG GTTGGTCTCC AACTCCTGGC CTAAACAGTA
 CTCCCGCCTT GGCCTCCCAA AGTGCTGGGA TTACAAGTGT GAGCCATTGT GCCCTGCCAG
 AATGGCACAT TTCTCTGAGT GTAATGCTGG CACTTAGCTC TCCACTAGTC CAGTTTAAGT
 TCTCAATACT CAGTAGCCAG CAGTAGCAGC AGCAAAGTAT GTAGAGTTGT TGCATATCTA
 CAAAGCGATG TGTCCTTTGG GGTTGGGGGC ACTGCAGAAT ATCTTCCTTG CTGACCATAA
 GGACAGAAAG ACAATGGG

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (in rs orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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