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Reference SNP (refSNP) Cluster Report: rs45220428                 
RefSNP
Organism:honey bee (Apis mellifera)
Molecule Type:Genomic
Created/Updated in build:127/140
Map to Genome Build:102/Weight
Validation Status:
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (FWD)
Allele Origin:
Ancestral Allele:Not available
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' or 'Contig Pos' column value to see variation in NCBI sequence viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss62997128 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs45220428 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss62997128BCM-HGSC|AMB-00423149fwd/BC/Ttaccatatattctttttacaaattatattatattattaatttatatttttataaattaga07/11/0607/12/06127Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs45220428|allelePos=251|totalLen=501|taxid=7460|snpclass=1|alleles='C/T'|mol=Genomic|build=127
 TATCTTTATA TACCTGTTGA TGATTTTACC ATATATTCTT TTTATAAATT ATATTATTAT
 TATTAATTTA TATTTTTATA AATTAGATAG ACACATATAT CTTTATATAC CTGTTGATGA
 TTTTACCATA TATTCTTTTT ACAAATTATA TTATTATTAT TAATTTATAT TTTTATAAAT
 TAGGTAGACA CATATATCTT TATATACCTG TTGATGATTT TACCATATAT TCTTTTTACA
 AATTATATTA
 Y
 TATTATTAAT TTATATTTTT ATAAATTAGA TAGACACATA TATCTTTATA TACCTGTTGA
 TGATTTTACC ATATATTCTT TTTACAAATT ATATTATTAT AATTAATTTA AATAAATTAG
 ATAGACACAT ATATCTTTAT ATACCTGTTG ATGATTTTAC CATATATTCT TTTCATAAAT
 TATATTATTA TTATTAATTT ATATTTTTAT AAATTAGATA GACACATATA TCTTTATATA
 CCTGTTGATG

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (in rs orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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