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Reference SNP (refSNP) Cluster Report: rs398107673                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:138/142
Map to Genome Build:106/Weight
Validation Status:
Allele
Variation Class:DIV:
deletion/insertion variation
RefSNP Alleles:-/T (FWD)
Allele Origin:
Ancestral Allele:T
Variation Viewer:unknown
Clinical Significance:NA
MAF/MinorAlleleCount:NA
MAF Source:
HGVS Names
  • NC_000004.11:g.95225185_95225186insT
  • NC_000004.12:g.94304034_94304035insT
  • NG_032150.1:g.43842_43843insA
  • NM_014485.2:c.337-1791_337-1790insA
  • XM_005262932.1:c.244-1791_244-1790insA
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss287752856 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs398107673 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss287752856GMI|GMI_NA10851_INDEL_85662fwd/-/Tgataagatttgattacacttctttttttttccagatatattttaaaaaacacatttcctg04/26/1012/21/10138Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs398107673|allelePos=501|totalLen=1001|taxid=9606|snpclass=2|alleles='-/T'|mol=Genomic|build=138
 GTTCTTTCCC TTGTTCTATA AAGTGCTCTG TGGTCAGTAT GTTCATAGTT TTAAAGAAAA
 CATTAGTTAT GAGTCTTTCT GCTGCTTACA CAGAATTTGT AATCCCATTG AAGGGCAGTG
 AGTCGATAAC CATGTGGTGC TTGCCACAGA TCTGCTCACC TCAGTTGGCA TCAGTCAGAA
 AAGTAATGGC CAATTTGATT GTTGGACAAC TTTCCAAAAA CTCCTGTGTG CACTCCTGGC
 AAATTCTGTT CTTCTAACGT GCATTTCCAG AGCTTCAGGT GCACCAATGT TTGTGTATAT
 GCAGAGTCAA ATAAAACTCT TATATCTGTG CTACTGACTT CTCCTTGAGC CCAGATTGTC
 TTTGTAAGTT TGGTGAATTA TTTCAGTCTA ATGAAATGTA AATTAATAAA CAGTGTAATT
 AGTATTTAAG TTTCATTTTA AAGTACAATC AACCAAAATA ACATAAAGAA GATAAGATTT
 GATTACACTT CTTTTTTTTT
 N
 CCAGATATAT TTTAAAAAAC ACATTTCCTG ATCCATCCTA GATAGCCACT CCTTTACTTG
 ATGGATTCAG AAATTTCTAG CCTCCCTTTT CAGAGGAGGT TTTTTCACCC TGAGAATTTG
 TTGCTATGAA AGTTTAACAA ATGACTTTTA GAGAGGTTCG TATATTTCTC AAAAGCATTT
 TCAGATATGC ACTACCAAAA TTATTTTGTG TTGGAACCAC GACATCAGAA TGTCCTCAGG
 CCTTCTCATT CTTCTTCCCC ATCCTGTTCT TTAGATGAGG AAATGGAAAC ACAGATACAT
 TAAATAACCA AAGTAACACT AATGGTGAGT TCAAGGATTG TCATGGTGAC CAATATCCAA
 AGGCATCTTT TGCTTTTAAT TCTTTTTTTA TTGGAAATGG AATTTTTAGT AATAAATACT
 GTAAAATTGT GTGTATTTGG TAGATTTTTA AGGTGTATAT GACAAGAATA TATTCACTAT
 CCATCTTAAG TGCATCAATA

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (in rs orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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