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Reference SNP (refSNP) Cluster Report: rs393692398                 
RefSNP
Organism:soybean (Glycine max)
Molecule Type:Genomic
Created/Updated in build:139/147
Map to Genome Build:102/Weight
Validation Status:byCluster
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/T (FWD)
Allele Origin:
Ancestral Allele:Not available
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss786373193 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs393692398 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss786373193KRIBB_SOYA|10Gmax_5Gsoja_SNP-4466749fwd/A/Tatagatatttactctattatatacttcattgtccttgagtctcttttcactaattcatac06/06/1306/07/13139Genomicunknown
ss1420384347TIANLAB|chr10_snp113073fwd/A/Ttatttactctattatatacttcattgtccttgagtctcttttcactaatt10/30/1410/31/14144Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs393692398|allelePos=151|totalLen=301|taxid=3847|snpclass=1|alleles='A/T'|mol=Genomic|build=144
 AATAGATGAG AGTTGACGAC AAAATCAATT TGTTATATTT TTTGCACCTT CATATACTAA
 ATTTGATTTT TCCATCTTTC ATGGATCAAT CTATCCACAC TCACACTTTT AGGAATTAAA
 ATAGATATTT ACTCTATTAT ATACTTCATT
 W
 GTCCTTGAGT CTCTTTTCAC TAATTCATAC CCTTAAGAAA GTTAATTATA TAGTTAATAA
 CATTAAATTT GTTAATAATT TATATCTTTA TCTTTAAGAT TATTGAGATT TATAATCTTT
 TTTTTTTCCA CTTAATTACT TTATCTCTTG

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

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