Skip to main content
NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP (refSNP) Cluster Report: rs386134087                 
RefSNP
Organism:cow (Bos taurus)
Molecule Type:Genomic
Created/Updated in build:138/146
Map to Genome Build:104/Weight 1
Validation Status:byCluster
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:A/C (FWD)
Allele Origin:
Ancestral Allele:Not available
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss704283615 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs386134087 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss704283615TZ_TUM|25_12270625fwd/TA/Ctacatctgggtgtgctcagggacaggggagctggtgggctgccgtctatggggtcgggga01/19/1301/23/13138Genomicunknown
ss7754804651000_BULL_GENOMES|25:g12270625A>Cfwd/TA/Cctgggtgtgctcagggacaggggagctggtgggctgccgtctatggggtc05/08/1305/10/13140Genomicunknown
ss954916179COFACTOR_GENOMICS|GCF_000003055.4:Chr25:g.12270625A>Gfwd/TA/Gctgggtgtgctcagggacaggggagctggtgggctgccgtctatggggtc12/31/1302/12/14140Genomicunknown
ss1102674426EVA_LIVESTOCK|IRBT.25:g12270625a>cfwd/TA/Cctgggtgtgctcagggacaggggagctggtgggctgccgtctatggggtc07/26/1407/28/14142Genomicunknown
ss1412578688HAFL_QUALITAS|HAFL_QUALITAS_SLIG_12611234fwd/TA/Cctgggtgtgctcagggacaggggagctggtgggctgccgtctatggggtc10/17/1410/18/14143Genomicunknown
ss1445396750WBARENDSE|25.12270625>Cfwd/TA/Cctgggtgtgctcagggacaggggagctggtgggctgccgtctatggggtc11/06/1411/07/14143Genomicunknown
ss1532641888EVA_LIVESTOCK|UGBT.25:g12270625a>cfwd/TA/Cctgggtgtgctcagggacaggggagctggtgggctgccgtctatggggtc12/08/1412/13/14143Genomicunknown
ss1846580455MARC|25_12270625fwd/TA/Cctgggtgtgctcagggacaggggagctggtgggctgccgtctatggggtc08/29/1508/31/15146Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs386134087|allelePos=51|totalLen=101|taxid=9913|snpclass=1|alleles='A/C'|mol=Genomic|build=146
 CCCCTGATCT GGATGTCAAT TACATCTGGG TGTGCTCAGG GACAGGGGAG
 M
 CTGGTGGGCT GCCGTCTATG GGGTCGGGGA CACGACTGAA GCGACTTAGC

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement