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Reference SNP (refSNP) Cluster Report: rs21785577                 
RefSNP
Organism:honey bee (Apis mellifera)
Molecule Type:Genomic
Created/Updated in build:125/140
Map to Genome Build:102/Weight 3
Validation Status:
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (REV)
Allele Origin:
Ancestral Allele:Not available
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss38320068 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs21785577 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss38320068BCM-HGSC|AAM-00258fwd/BC/Taacgcgatagggttttgaagaaaaacgcttgagggacgcggaagaacgggaagcacgata05/02/0505/02/05125Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs21785577|allelePos=251|totalLen=501|taxid=7460|snpclass=1|alleles='C/T'|mol=Genomic|build=125
 CCTCTTTTTT TTTATTGCTA CTCGGTAACG ATTATCTTTT GCTCTATTAG TACCGTCGTT
 AAACGGGTAT CTCGTTTTCA TCATTGCTAA AACTGGCAAT ATATATACTA TATTATCCTT
 TTAAATAGAC GTCTAACGAC CCATCCGAGA TTTAAATCAC AAAAAACTAG ATACGCACGT
 AATGTCGAGT TGGGATTGAA ATCGAGGATT CATTCCAGGC AACGCGATAG GGTTTTGAAG
 AAAAACGCTT
 Y
 GAGGGACGCG GAAGAACGGG AAGCACGATA AACGCTAGAA GAAAAATCGT CGGCCAAATA
 TTAGGAGAGA GGCGAATGAA TCGCGGCGGA CGAATCGAAA CGGATAGGTC CCCGAGTAAC
 TTGGATCCAT CGGGGGGCTC CGGTCGAGAA ATCGCGAGGT AATGGCCGAT TTTTTGCTCG
 ATCCGGAGAC ACAGGCCGAA CCGGGGGCTT TTATTGGGGC TTAAGCTGCC GAGAAAAGAA
 GGTGGCTCCA

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NW_622670
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) Note: rs21785577 allele is reverse to the genome back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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