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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs191076009

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr14:49587306 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
C>G
Variation Type
SNV Single Nucleotide Variation
Frequency
G=0.001560 (413/264690, TOPMED)
G=0.001934 (271/140130, GnomAD)
G=0.00302 (57/18890, ALFA) (+ 6 more)
G=0.0008 (5/6404, 1000G_30x)
G=0.0006 (3/5008, 1000G)
G=0.0063 (28/4480, Estonian)
G=0.0029 (11/3854, ALSPAC)
G=0.0046 (17/3708, TWINSUK)
G=0.002 (2/998, GoNL)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
RPS29 : Intron Variant
RN7SL1 : 500B Downstream Variant
Publications
0 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541
Population Group Sample Size Ref Allele Alt Allele
Total Global 18890 C=0.99698 G=0.00302
European Sub 14286 C=0.99615 G=0.00385
African Sub 2946 C=0.9993 G=0.0007
African Others Sub 114 C=1.000 G=0.000
African American Sub 2832 C=0.9993 G=0.0007
Asian Sub 112 C=1.000 G=0.000
East Asian Sub 86 C=1.00 G=0.00
Other Asian Sub 26 C=1.00 G=0.00
Latin American 1 Sub 146 C=1.000 G=0.000
Latin American 2 Sub 610 C=1.000 G=0.000
South Asian Sub 98 C=1.00 G=0.00
Other Sub 692 C=1.000 G=0.000


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
TopMed Global Study-wide 264690 C=0.998440 G=0.001560
gnomAD - Genomes Global Study-wide 140130 C=0.998066 G=0.001934
gnomAD - Genomes European Sub 75878 C=0.99681 G=0.00319
gnomAD - Genomes African Sub 42008 C=0.99950 G=0.00050
gnomAD - Genomes American Sub 13638 C=0.99985 G=0.00015
gnomAD - Genomes Ashkenazi Jewish Sub 3324 C=1.0000 G=0.0000
gnomAD - Genomes East Asian Sub 3130 C=1.0000 G=0.0000
gnomAD - Genomes Other Sub 2152 C=0.9972 G=0.0028
Allele Frequency Aggregator Total Global 18890 C=0.99698 G=0.00302
Allele Frequency Aggregator European Sub 14286 C=0.99615 G=0.00385
Allele Frequency Aggregator African Sub 2946 C=0.9993 G=0.0007
Allele Frequency Aggregator Other Sub 692 C=1.000 G=0.000
Allele Frequency Aggregator Latin American 2 Sub 610 C=1.000 G=0.000
Allele Frequency Aggregator Latin American 1 Sub 146 C=1.000 G=0.000
Allele Frequency Aggregator Asian Sub 112 C=1.000 G=0.000
Allele Frequency Aggregator South Asian Sub 98 C=1.00 G=0.00
1000Genomes_30x Global Study-wide 6404 C=0.9992 G=0.0008
1000Genomes_30x African Sub 1786 C=1.0000 G=0.0000
1000Genomes_30x Europe Sub 1266 C=0.9976 G=0.0024
1000Genomes_30x South Asian Sub 1202 C=1.0000 G=0.0000
1000Genomes_30x East Asian Sub 1170 C=1.0000 G=0.0000
1000Genomes_30x American Sub 980 C=0.998 G=0.002
1000Genomes Global Study-wide 5008 C=0.9994 G=0.0006
1000Genomes African Sub 1322 C=1.0000 G=0.0000
1000Genomes East Asian Sub 1008 C=1.0000 G=0.0000
1000Genomes Europe Sub 1006 C=0.9980 G=0.0020
1000Genomes South Asian Sub 978 C=1.000 G=0.000
1000Genomes American Sub 694 C=0.999 G=0.001
Genetic variation in the Estonian population Estonian Study-wide 4480 C=0.9938 G=0.0063
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 C=0.9971 G=0.0029
UK 10K study - Twins TWIN COHORT Study-wide 3708 C=0.9954 G=0.0046
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 C=0.998 G=0.002
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 14 NC_000014.9:g.49587306C>G
GRCh37.p13 chr 14 NC_000014.8:g.50054024C>G
RPS29 RefSeqGene (LRG_1147) NG_050638.2:g.16405G>C
Gene: RPS29, ribosomal protein S29 (minus strand)
Molecule type Change Amino acid[Codon] SO Term
RPS29 transcript variant 3 NM_001351375.2:c.54-1257G…

NM_001351375.2:c.54-1257G>C

N/A Intron Variant
RPS29 transcript variant 2 NM_001030001.4:c. N/A Genic Upstream Transcript Variant
RPS29 transcript variant 1 NM_001032.5:c. N/A Genic Upstream Transcript Variant
Gene: RN7SL1, RNA component of signal recognition particle 7SL1 (plus strand) : 500B Downstream Variant
Molecule type Change Amino acid[Codon] SO Term
RN7SL1 transcript NR_002715.1:n. N/A Downstream Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement C= G
GRCh38.p14 chr 14 NC_000014.9:g.49587306= NC_000014.9:g.49587306C>G
GRCh37.p13 chr 14 NC_000014.8:g.50054024= NC_000014.8:g.50054024C>G
RPS29 RefSeqGene (LRG_1147) NG_050638.2:g.16405= NG_050638.2:g.16405G>C
RPS29 transcript variant 3 NM_001351375.2:c.54-1257= NM_001351375.2:c.54-1257G>C
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

18 SubSNP, 9 Frequency submissions
No Submitter Submission ID Date (Build)
1 1000GENOMES ss463792637 Sep 17, 2011 (135)
2 EVA-GONL ss991129467 Aug 21, 2014 (142)
3 1000GENOMES ss1350941262 Aug 21, 2014 (142)
4 EVA_UK10K_ALSPAC ss1631699945 Apr 01, 2015 (144)
5 EVA_UK10K_TWINSUK ss1674693978 Apr 01, 2015 (144)
6 EVA_DECODE ss1695126641 Apr 01, 2015 (144)
7 HUMAN_LONGEVITY ss2201851561 Dec 20, 2016 (150)
8 GNOMAD ss2927520095 Nov 08, 2017 (151)
9 SWEGEN ss3012175919 Nov 08, 2017 (151)
10 EGCUT_WGS ss3679423472 Jul 13, 2019 (153)
11 EVA_DECODE ss3696646016 Jul 13, 2019 (153)
12 TOPMED ss4970110422 Apr 26, 2021 (155)
13 1000G_HIGH_COVERAGE ss5296167519 Oct 16, 2022 (156)
14 EVA ss5415166687 Oct 16, 2022 (156)
15 HUGCELL_USP ss5490216303 Oct 16, 2022 (156)
16 1000G_HIGH_COVERAGE ss5596427641 Oct 16, 2022 (156)
17 EVA ss5901274841 Oct 16, 2022 (156)
18 EVA ss5947617891 Oct 16, 2022 (156)
19 1000Genomes NC_000014.8 - 50054024 Oct 12, 2018 (152)
20 1000Genomes_30x NC_000014.9 - 49587306 Oct 16, 2022 (156)
21 The Avon Longitudinal Study of Parents and Children NC_000014.8 - 50054024 Oct 12, 2018 (152)
22 Genetic variation in the Estonian population NC_000014.8 - 50054024 Oct 12, 2018 (152)
23 gnomAD - Genomes NC_000014.9 - 49587306 Apr 26, 2021 (155)
24 Genome of the Netherlands Release 5 NC_000014.8 - 50054024 Apr 27, 2020 (154)
25 TopMed NC_000014.9 - 49587306 Apr 26, 2021 (155)
26 UK 10K study - Twins NC_000014.8 - 50054024 Oct 12, 2018 (152)
27 ALFA NC_000014.9 - 49587306 Apr 26, 2021 (155)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss1695126641 NC_000014.7:49123773:C:G NC_000014.9:49587305:C:G (self)
63919290, 35504456, 25161720, 15860971, 35504456, ss463792637, ss991129467, ss1350941262, ss1631699945, ss1674693978, ss2927520095, ss3012175919, ss3679423472, ss5415166687, ss5947617891 NC_000014.8:50054023:C:G NC_000014.9:49587305:C:G (self)
83953576, 450726586, 185656081, 11277859169, ss2201851561, ss3696646016, ss4970110422, ss5296167519, ss5490216303, ss5596427641, ss5901274841 NC_000014.9:49587305:C:G NC_000014.9:49587305:C:G (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs191076009

Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post761+d5e8e07