Name: rs16884459
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs16884459

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr5:55691550 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: G>C / G>T
Variation Type: SNV Single Nucleotide Variation
Frequency: G=0.418112 (110670/264690, TOPMED)
G=0.402784 (56372/139956, GnomAD)
G=0.48889 (13815/28258, 14KJPN) (+ 17 more)
G=0.36300 (6857/18890, ALFA)
G=0.49039 (8219/16760, 8.3KJPN)
G=0.4408 (2823/6404, 1000G_30x)
G=0.4391 (2199/5008, 1000G)
G=0.2900 (1299/4480, Estonian)
G=0.3339 (1287/3854, ALSPAC)
G=0.3293 (1221/3708, TWINSUK)
T=0.4792 (1404/2930, KOREAN)
T=0.4618 (846/1832, Korea1K)
G=0.357 (356/998, GoNL)
G=0.308 (185/600, NorthernSweden)
G=0.274 (119/434, SGDP_PRJ)
G=0.394 (85/216, Qatari)
T=0.397 (85/214, Vietnamese)
G=0.44 (38/86, Ancient Sardinia)
G=0.32 (14/44, Siberian)
G=0.30 (12/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: SLC38A9 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	18890	G=0.36300	T=0.63700
European	Sub	14286	G=0.32724	T=0.67276
African	Sub	2946	G=0.5139	T=0.4861
African Others	Sub	114	G=0.561	T=0.439
African American	Sub	2832	G=0.5120	T=0.4880
Asian	Sub	112	G=0.571	T=0.429
East Asian	Sub	86	G=0.58	T=0.42
Other Asian	Sub	26	G=0.54	T=0.46
Latin American 1	Sub	146	G=0.473	T=0.527
Latin American 2	Sub	610	G=0.387	T=0.613
South Asian	Sub	98	G=0.36	T=0.64
Other	Sub	692	G=0.382	T=0.618

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	G=0.418112	T=0.581888
gnomAD - Genomes	Global	Study-wide	139956	G=0.402784	T=0.597216
gnomAD - Genomes	European	Sub	75832	G=0.32929	T=0.67071
gnomAD - Genomes	African	Sub	41904	G=0.51983	T=0.48017
gnomAD - Genomes	American	Sub	13636	G=0.42872	T=0.57128
gnomAD - Genomes	Ashkenazi Jewish	Sub	3320	G=0.3795	T=0.6205
gnomAD - Genomes	East Asian	Sub	3116	G=0.5282	T=0.4718
gnomAD - Genomes	Other	Sub	2148	G=0.4032	T=0.5968
14KJPN	JAPANESE	Study-wide	28258	G=0.48889	T=0.51111
Allele Frequency Aggregator	Total	Global	18890	G=0.36300	T=0.63700
Allele Frequency Aggregator	European	Sub	14286	G=0.32724	T=0.67276
Allele Frequency Aggregator	African	Sub	2946	G=0.5139	T=0.4861
Allele Frequency Aggregator	Other	Sub	692	G=0.382	T=0.618
Allele Frequency Aggregator	Latin American 2	Sub	610	G=0.387	T=0.613
Allele Frequency Aggregator	Latin American 1	Sub	146	G=0.473	T=0.527
Allele Frequency Aggregator	Asian	Sub	112	G=0.571	T=0.429
Allele Frequency Aggregator	South Asian	Sub	98	G=0.36	T=0.64
8.3KJPN	JAPANESE	Study-wide	16760	G=0.49039	T=0.50961
1000Genomes_30x	Global	Study-wide	6404	G=0.4408	T=0.5592
1000Genomes_30x	African	Sub	1786	G=0.5666	T=0.4334
1000Genomes_30x	Europe	Sub	1266	G=0.3373	T=0.6627
1000Genomes_30x	South Asian	Sub	1202	G=0.2870	T=0.7130
1000Genomes_30x	East Asian	Sub	1170	G=0.5402	T=0.4598
1000Genomes_30x	American	Sub	980	G=0.415	T=0.585
1000Genomes	Global	Study-wide	5008	G=0.4391	T=0.5609
1000Genomes	African	Sub	1322	G=0.5628	T=0.4372
1000Genomes	East Asian	Sub	1008	G=0.5387	T=0.4613
1000Genomes	Europe	Sub	1006	G=0.3370	T=0.6630
1000Genomes	South Asian	Sub	978	G=0.291	T=0.709
1000Genomes	American	Sub	694	G=0.415	T=0.585
Genetic variation in the Estonian population	Estonian	Study-wide	4480	G=0.2900	T=0.7100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.3339	T=0.6661
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.3293	T=0.6707
KOREAN population from KRGDB	KOREAN	Study-wide	2930	G=0.5208	C=0.0000, T=0.4792
Korean Genome Project	KOREAN	Study-wide	1832	G=0.5382	T=0.4618
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	G=0.357	T=0.643
Northern Sweden	ACPOP	Study-wide	600	G=0.308	T=0.692
SGDP_PRJ	Global	Study-wide	434	G=0.274	T=0.726
Qatari	Global	Study-wide	216	G=0.394	T=0.606
A Vietnamese Genetic Variation Database	Global	Study-wide	214	G=0.603	T=0.397
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	86	G=0.44	T=0.56
Siberian	Global	Study-wide	44	G=0.32	T=0.68
The Danish reference pan genome	Danish	Study-wide	40	G=0.30	T=0.70

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 5	NC_000005.10:g.55691550G>C
GRCh38.p14 chr 5	NC_000005.10:g.55691550G>T
GRCh37.p13 chr 5	NC_000005.9:g.54987378G>C
GRCh37.p13 chr 5	NC_000005.9:g.54987378G>T

Gene: SLC38A9, solute carrier family 38 member 9 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
SLC38A9 transcript variant 2	NM_001258286.1:c.-77+1040… NM_001258286.1:c.-77+1040C>G	N/A	Intron Variant
SLC38A9 transcript variant 3	NM_001258287.1:c.-72-258C… NM_001258287.1:c.-72-258C>G	N/A	Intron Variant
SLC38A9 transcript variant 4	NM_001282429.1:c.-127+629… NM_001282429.1:c.-127+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant 6	NM_001349382.1:c.113+6296… NM_001349382.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant 7	NM_001349383.1:c.113+6296… NM_001349383.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant 8	NM_001349384.1:c.113+6296… NM_001349384.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant 9	NM_001349385.1:c.113+6296… NM_001349385.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant 1	NM_173514.4:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant 5	NR_047649.1:n.	N/A	Intron Variant
SLC38A9 transcript variant 10	NR_146165.1:n.	N/A	Intron Variant
SLC38A9 transcript variant X3	XM_006714539.4:c.113+6296… XM_006714539.4:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X2	XM_011543174.2:c.113+6296… XM_011543174.2:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X7	XM_011543176.2:c.113+6296… XM_011543176.2:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X9	XM_011543177.2:c.113+6296… XM_011543177.2:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X15	XM_011543178.2:c.113+6296… XM_011543178.2:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X29	XM_011543180.2:c.113+6296… XM_011543180.2:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X33	XM_011543183.2:c.113+6296… XM_011543183.2:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X4	XM_017009077.2:c.113+6296… XM_017009077.2:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X13	XM_017009078.3:c.113+6296… XM_017009078.3:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X19	XM_017009080.2:c.113+6296… XM_017009080.2:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X26	XM_017009081.2:c.113+6296… XM_017009081.2:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X28	XM_017009082.2:c.113+6296… XM_017009082.2:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X8	XM_024454369.2:c.113+6296… XM_024454369.2:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X1	XM_047416778.1:c.113+6296… XM_047416778.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X5	XM_047416779.1:c.113+6296… XM_047416779.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X6	XM_047416780.1:c.113+6296… XM_047416780.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X10	XM_047416781.1:c.113+6296… XM_047416781.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X11	XM_047416782.1:c.113+6296… XM_047416782.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X12	XM_047416783.1:c.113+6296… XM_047416783.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X14	XM_047416784.1:c.113+6296… XM_047416784.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X16	XM_047416785.1:c.113+6296… XM_047416785.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X17	XM_047416786.1:c.113+6296… XM_047416786.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X18	XM_047416787.1:c.113+6296… XM_047416787.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X20	XM_047416788.1:c.113+6296… XM_047416788.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X22	XM_047416789.1:c.113+6296… XM_047416789.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X23	XM_047416790.1:c.113+6296… XM_047416790.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X24	XM_047416791.1:c.113+6296… XM_047416791.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X25	XM_047416792.1:c.113+6296… XM_047416792.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X27	XM_047416793.1:c.113+6296… XM_047416793.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X30	XM_047416794.1:c.113+6296… XM_047416794.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X31	XM_047416795.1:c.113+6296… XM_047416795.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X34	XM_047416796.1:c.113+6296… XM_047416796.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X35	XM_047416797.1:c.113+6296… XM_047416797.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X36	XM_047416798.1:c.113+6296… XM_047416798.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X37	XM_047416799.1:c.113+6296… XM_047416799.1:c.113+6296C>G	N/A	Intron Variant
SLC38A9 transcript variant X21	XR_007058582.1:n.	N/A	Intron Variant
SLC38A9 transcript variant X32	XR_007058583.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	G=	C	T
GRCh38.p14 chr 5	NC_000005.10:g.55691550=	NC_000005.10:g.55691550G>C	NC_000005.10:g.55691550G>T
GRCh37.p13 chr 5	NC_000005.9:g.54987378=	NC_000005.9:g.54987378G>C	NC_000005.9:g.54987378G>T
SLC38A9 transcript variant 2	NM_001258286.1:c.-77+1040=	NM_001258286.1:c.-77+1040C>G	NM_001258286.1:c.-77+1040C>A
SLC38A9 transcript variant 3	NM_001258287.1:c.-72-258=	NM_001258287.1:c.-72-258C>G	NM_001258287.1:c.-72-258C>A
SLC38A9 transcript variant 4	NM_001282429.1:c.-127+6296=	NM_001282429.1:c.-127+6296C>G	NM_001282429.1:c.-127+6296C>A
SLC38A9 transcript variant 6	NM_001349382.1:c.113+6296=	NM_001349382.1:c.113+6296C>G	NM_001349382.1:c.113+6296C>A
SLC38A9 transcript variant 7	NM_001349383.1:c.113+6296=	NM_001349383.1:c.113+6296C>G	NM_001349383.1:c.113+6296C>A
SLC38A9 transcript variant 8	NM_001349384.1:c.113+6296=	NM_001349384.1:c.113+6296C>G	NM_001349384.1:c.113+6296C>A
SLC38A9 transcript variant 9	NM_001349385.1:c.113+6296=	NM_001349385.1:c.113+6296C>G	NM_001349385.1:c.113+6296C>A
SLC38A9 transcript variant 1	NM_173514.3:c.113+6296=	NM_173514.3:c.113+6296C>G	NM_173514.3:c.113+6296C>A
SLC38A9 transcript variant 1	NM_173514.4:c.113+6296=	NM_173514.4:c.113+6296C>G	NM_173514.4:c.113+6296C>A
SLC38A9 transcript variant X3	XM_006714539.4:c.113+6296=	XM_006714539.4:c.113+6296C>G	XM_006714539.4:c.113+6296C>A
SLC38A9 transcript variant X2	XM_011543174.2:c.113+6296=	XM_011543174.2:c.113+6296C>G	XM_011543174.2:c.113+6296C>A
SLC38A9 transcript variant X7	XM_011543176.2:c.113+6296=	XM_011543176.2:c.113+6296C>G	XM_011543176.2:c.113+6296C>A
SLC38A9 transcript variant X9	XM_011543177.2:c.113+6296=	XM_011543177.2:c.113+6296C>G	XM_011543177.2:c.113+6296C>A
SLC38A9 transcript variant X15	XM_011543178.2:c.113+6296=	XM_011543178.2:c.113+6296C>G	XM_011543178.2:c.113+6296C>A
SLC38A9 transcript variant X29	XM_011543180.2:c.113+6296=	XM_011543180.2:c.113+6296C>G	XM_011543180.2:c.113+6296C>A
SLC38A9 transcript variant X33	XM_011543183.2:c.113+6296=	XM_011543183.2:c.113+6296C>G	XM_011543183.2:c.113+6296C>A
SLC38A9 transcript variant X4	XM_017009077.2:c.113+6296=	XM_017009077.2:c.113+6296C>G	XM_017009077.2:c.113+6296C>A
SLC38A9 transcript variant X13	XM_017009078.3:c.113+6296=	XM_017009078.3:c.113+6296C>G	XM_017009078.3:c.113+6296C>A
SLC38A9 transcript variant X19	XM_017009080.2:c.113+6296=	XM_017009080.2:c.113+6296C>G	XM_017009080.2:c.113+6296C>A
SLC38A9 transcript variant X26	XM_017009081.2:c.113+6296=	XM_017009081.2:c.113+6296C>G	XM_017009081.2:c.113+6296C>A
SLC38A9 transcript variant X28	XM_017009082.2:c.113+6296=	XM_017009082.2:c.113+6296C>G	XM_017009082.2:c.113+6296C>A
SLC38A9 transcript variant X8	XM_024454369.2:c.113+6296=	XM_024454369.2:c.113+6296C>G	XM_024454369.2:c.113+6296C>A
SLC38A9 transcript variant X1	XM_047416778.1:c.113+6296=	XM_047416778.1:c.113+6296C>G	XM_047416778.1:c.113+6296C>A
SLC38A9 transcript variant X5	XM_047416779.1:c.113+6296=	XM_047416779.1:c.113+6296C>G	XM_047416779.1:c.113+6296C>A
SLC38A9 transcript variant X6	XM_047416780.1:c.113+6296=	XM_047416780.1:c.113+6296C>G	XM_047416780.1:c.113+6296C>A
SLC38A9 transcript variant X10	XM_047416781.1:c.113+6296=	XM_047416781.1:c.113+6296C>G	XM_047416781.1:c.113+6296C>A
SLC38A9 transcript variant X11	XM_047416782.1:c.113+6296=	XM_047416782.1:c.113+6296C>G	XM_047416782.1:c.113+6296C>A
SLC38A9 transcript variant X12	XM_047416783.1:c.113+6296=	XM_047416783.1:c.113+6296C>G	XM_047416783.1:c.113+6296C>A
SLC38A9 transcript variant X14	XM_047416784.1:c.113+6296=	XM_047416784.1:c.113+6296C>G	XM_047416784.1:c.113+6296C>A
SLC38A9 transcript variant X16	XM_047416785.1:c.113+6296=	XM_047416785.1:c.113+6296C>G	XM_047416785.1:c.113+6296C>A
SLC38A9 transcript variant X17	XM_047416786.1:c.113+6296=	XM_047416786.1:c.113+6296C>G	XM_047416786.1:c.113+6296C>A
SLC38A9 transcript variant X18	XM_047416787.1:c.113+6296=	XM_047416787.1:c.113+6296C>G	XM_047416787.1:c.113+6296C>A
SLC38A9 transcript variant X20	XM_047416788.1:c.113+6296=	XM_047416788.1:c.113+6296C>G	XM_047416788.1:c.113+6296C>A
SLC38A9 transcript variant X22	XM_047416789.1:c.113+6296=	XM_047416789.1:c.113+6296C>G	XM_047416789.1:c.113+6296C>A
SLC38A9 transcript variant X23	XM_047416790.1:c.113+6296=	XM_047416790.1:c.113+6296C>G	XM_047416790.1:c.113+6296C>A
SLC38A9 transcript variant X24	XM_047416791.1:c.113+6296=	XM_047416791.1:c.113+6296C>G	XM_047416791.1:c.113+6296C>A
SLC38A9 transcript variant X25	XM_047416792.1:c.113+6296=	XM_047416792.1:c.113+6296C>G	XM_047416792.1:c.113+6296C>A
SLC38A9 transcript variant X27	XM_047416793.1:c.113+6296=	XM_047416793.1:c.113+6296C>G	XM_047416793.1:c.113+6296C>A
SLC38A9 transcript variant X30	XM_047416794.1:c.113+6296=	XM_047416794.1:c.113+6296C>G	XM_047416794.1:c.113+6296C>A
SLC38A9 transcript variant X31	XM_047416795.1:c.113+6296=	XM_047416795.1:c.113+6296C>G	XM_047416795.1:c.113+6296C>A
SLC38A9 transcript variant X34	XM_047416796.1:c.113+6296=	XM_047416796.1:c.113+6296C>G	XM_047416796.1:c.113+6296C>A
SLC38A9 transcript variant X35	XM_047416797.1:c.113+6296=	XM_047416797.1:c.113+6296C>G	XM_047416797.1:c.113+6296C>A
SLC38A9 transcript variant X36	XM_047416798.1:c.113+6296=	XM_047416798.1:c.113+6296C>G	XM_047416798.1:c.113+6296C>A
SLC38A9 transcript variant X37	XM_047416799.1:c.113+6296=	XM_047416799.1:c.113+6296C>G	XM_047416799.1:c.113+6296C>A

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

75 SubSNP, 20 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	PERLEGEN	ss23951767	Sep 20, 2004 (123)
2	HGSV	ss81133044	Dec 15, 2007 (130)
3	HGSV	ss81181688	Dec 15, 2007 (130)
4	HGSV	ss81733294	Dec 15, 2007 (130)
5	HUMANGENOME_JCVI	ss98723766	Feb 05, 2009 (130)
6	BGI	ss104196220	Dec 01, 2009 (131)
7	1000GENOMES	ss109044433	Jan 23, 2009 (130)
8	1000GENOMES	ss111846302	Jan 25, 2009 (130)
9	ILLUMINA-UK	ss116616246	Feb 14, 2009 (130)
10	ENSEMBL	ss139437674	Dec 01, 2009 (131)
11	GMI	ss155447239	Dec 01, 2009 (131)
12	COMPLETE_GENOMICS	ss162260501	Jul 04, 2010 (132)
13	COMPLETE_GENOMICS	ss164955312	Jul 04, 2010 (132)
14	COMPLETE_GENOMICS	ss166551452	Jul 04, 2010 (132)
15	BUSHMAN	ss200258297	Jul 04, 2010 (132)
16	BCM-HGSC-SUB	ss206751560	Jul 04, 2010 (132)
17	1000GENOMES	ss221681974	Jul 14, 2010 (132)
18	1000GENOMES	ss232948463	Jul 14, 2010 (132)
19	1000GENOMES	ss240120708	Jul 15, 2010 (132)
20	GMI	ss278294657	May 04, 2012 (137)
21	GMI	ss285178882	Apr 25, 2013 (138)
22	PJP	ss293359233	May 09, 2011 (134)
23	TISHKOFF	ss558394999	Apr 25, 2013 (138)
24	SSMP	ss652262558	Apr 25, 2013 (138)
25	EVA-GONL	ss981570632	Aug 21, 2014 (142)
26	JMKIDD_LAB	ss1072635202	Aug 21, 2014 (142)
27	1000GENOMES	ss1315122422	Aug 21, 2014 (142)
28	DDI	ss1430345113	Apr 01, 2015 (144)
29	EVA_GENOME_DK	ss1581140139	Apr 01, 2015 (144)
30	EVA_DECODE	ss1591089526	Apr 01, 2015 (144)
31	EVA_UK10K_ALSPAC	ss1612900754	Apr 01, 2015 (144)
32	EVA_UK10K_TWINSUK	ss1655894787	Apr 01, 2015 (144)
33	HAMMER_LAB	ss1803523935	Sep 08, 2015 (146)
34	WEILL_CORNELL_DGM	ss1924829398	Feb 12, 2016 (147)
35	GENOMED	ss1970088987	Jul 19, 2016 (147)
36	JJLAB	ss2023018452	Sep 14, 2016 (149)
37	USC_VALOUEV	ss2151173996	Dec 20, 2016 (150)
38	HUMAN_LONGEVITY	ss2273741454	Dec 20, 2016 (150)
39	SYSTEMSBIOZJU	ss2626006739	Nov 08, 2017 (151)
40	GRF	ss2706716574	Nov 08, 2017 (151)
41	GNOMAD	ss2824667421	Nov 08, 2017 (151)
42	SWEGEN	ss2996942675	Nov 08, 2017 (151)
43	BIOINF_KMB_FNS_UNIBA	ss3025293626	Nov 08, 2017 (151)
44	CSHL	ss3346390452	Nov 08, 2017 (151)
45	URBANLAB	ss3648062442	Oct 12, 2018 (152)
46	EGCUT_WGS	ss3664820464	Jul 13, 2019 (153)
47	EVA_DECODE	ss3714697341	Jul 13, 2019 (153)
48	ACPOP	ss3732360299	Jul 13, 2019 (153)
49	EVA	ss3763438228	Jul 13, 2019 (153)
50	PACBIO	ss3785112140	Jul 13, 2019 (153)
51	PACBIO	ss3790518578	Jul 13, 2019 (153)
52	PACBIO	ss3795395194	Jul 13, 2019 (153)
53	KHV_HUMAN_GENOMES	ss3806609684	Jul 13, 2019 (153)
54	EVA	ss3829246705	Apr 26, 2020 (154)
55	EVA	ss3838094900	Apr 26, 2020 (154)
56	EVA	ss3843535471	Apr 26, 2020 (154)
57	SGDP_PRJ	ss3861866291	Apr 26, 2020 (154)
58	KRGDB	ss3908401962	Apr 26, 2020 (154)
59	KOGIC	ss3956700207	Apr 26, 2020 (154)
60	EVA	ss3985140953	Apr 26, 2021 (155)
61	TOPMED	ss4660139827	Apr 26, 2021 (155)
62	TOMMO_GENOMICS	ss5171766965	Apr 26, 2021 (155)
63	1000G_HIGH_COVERAGE	ss5263993822	Oct 17, 2022 (156)
64	EVA	ss5357603253	Oct 17, 2022 (156)
65	HUGCELL_USP	ss5462174501	Oct 17, 2022 (156)
66	EVA	ss5508024520	Oct 17, 2022 (156)
67	1000G_HIGH_COVERAGE	ss5547655294	Oct 17, 2022 (156)
68	SANFORD_IMAGENETICS	ss5637815975	Oct 17, 2022 (156)
69	TOMMO_GENOMICS	ss5708170442	Oct 17, 2022 (156)
70	YY_MCH	ss5806327902	Oct 17, 2022 (156)
71	EVA	ss5834935094	Oct 17, 2022 (156)
72	EVA	ss5854816113	Oct 17, 2022 (156)
73	EVA	ss5894208836	Oct 17, 2022 (156)
74	EVA	ss5966239560	Oct 17, 2022 (156)
75	EVA	ss5980294466	Oct 17, 2022 (156)
76	1000Genomes	NC_000005.9 - 54987378	Oct 12, 2018 (152)
77	1000Genomes_30x	NC_000005.10 - 55691550	Oct 17, 2022 (156)
78	The Avon Longitudinal Study of Parents and Children	NC_000005.9 - 54987378	Oct 12, 2018 (152)
79	Genetic variation in the Estonian population	NC_000005.9 - 54987378	Oct 12, 2018 (152)
80	The Danish reference pan genome	NC_000005.9 - 54987378	Apr 26, 2020 (154)
81	gnomAD - Genomes	NC_000005.10 - 55691550	Apr 26, 2021 (155)
82	Genome of the Netherlands Release 5	NC_000005.9 - 54987378	Apr 26, 2020 (154)
83	KOREAN population from KRGDB	NC_000005.9 - 54987378	Apr 26, 2020 (154)
84	Korean Genome Project	NC_000005.10 - 55691550	Apr 26, 2020 (154)
85	Northern Sweden	NC_000005.9 - 54987378	Jul 13, 2019 (153)
86	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000005.9 - 54987378	Apr 26, 2021 (155)
87	Qatari	NC_000005.9 - 54987378	Apr 26, 2020 (154)
88	SGDP_PRJ	NC_000005.9 - 54987378	Apr 26, 2020 (154)
89	Siberian	NC_000005.9 - 54987378	Apr 26, 2020 (154)
90	8.3KJPN	NC_000005.9 - 54987378	Apr 26, 2021 (155)
91	14KJPN	NC_000005.10 - 55691550	Oct 17, 2022 (156)
92	TopMed	NC_000005.10 - 55691550	Apr 26, 2021 (155)
93	UK 10K study - Twins	NC_000005.9 - 54987378	Oct 12, 2018 (152)
94	A Vietnamese Genetic Variation Database	NC_000005.9 - 54987378	Jul 13, 2019 (153)
95	ALFA	NC_000005.10 - 55691550	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs59441040	May 25, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
15579356, ss3908401962	NC_000005.9:54987377:G:C	NC_000005.10:55691549:G:C	(self)
ss81133044, ss81181688, ss81733294, ss109044433, ss111846302, ss116616246, ss162260501, ss164955312, ss166551452, ss200258297, ss206751560, ss278294657, ss285178882, ss293359233, ss1591089526	NC_000005.8:55023134:G:T	NC_000005.10:55691549:G:T	(self)
26722763, 14853617, 10558712, 7305078, 6603589, 15579356, 5645164, 366880, 6871328, 13883271, 3690350, 29736272, 14853617, 3300453, ss221681974, ss232948463, ss240120708, ss558394999, ss652262558, ss981570632, ss1072635202, ss1315122422, ss1430345113, ss1581140139, ss1612900754, ss1655894787, ss1803523935, ss1924829398, ss1970088987, ss2023018452, ss2151173996, ss2626006739, ss2706716574, ss2824667421, ss2996942675, ss3346390452, ss3664820464, ss3732360299, ss3763438228, ss3785112140, ss3790518578, ss3795395194, ss3829246705, ss3838094900, ss3861866291, ss3908401962, ss3985140953, ss5171766965, ss5357603253, ss5508024520, ss5637815975, ss5834935094, ss5966239560, ss5980294466	NC_000005.9:54987377:G:T	NC_000005.10:55691549:G:T	(self)
35181229, 188824970, 13078208, 42007546, 497517384, 2225818355, ss2273741454, ss3025293626, ss3648062442, ss3714697341, ss3806609684, ss3843535471, ss3956700207, ss4660139827, ss5263993822, ss5462174501, ss5547655294, ss5708170442, ss5806327902, ss5854816113, ss5894208836	NC_000005.10:55691549:G:T	NC_000005.10:55691549:G:T	(self)
ss23951767, ss98723766, ss104196220, ss139437674, ss155447239	NT_006713.15:5581736:G:T	NC_000005.10:55691549:G:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs16884459

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs16884459