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Reference SNP (refSNP) Cluster Report: rs150540209                 
RefSNP
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:134/147
Map to Genome Build:107/Weight 1
Validation Status:byClusterWith1000GenomeData
Allele
Variation Class:DIV:
deletion/insertion variation
RefSNP Alleles:-/G (FWD)
Allele Origin:
Ancestral Allele:G
Variation Viewer:link to VariationViewer
Clinical Significance:NA
MAF/MinorAlleleCount:-=0.0427/214 (1000 Genomes)
HGVS Names
  • NC_000010.10:g.93016617delG
  • NC_000010.11:g.91256860delG
  • NM_001256549.1:c.475-4466del
  • NM_001256549.1:c.475-4466delG
  • NM_001257101.1:c.475-4466del
  • NM_001257101.1:c.475-4466delG
  • NM_032373.4:c.475-4466del
  • NM_032373.4:c.475-4466delG
  • XM_006718030.1:c.280-4466del
  • XM_011540271.1:c.475-4466del
  • XM_011540272.1:c.475-4466del
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss327737346 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs150540209 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss3277373461000GENOMES|YRI_chr10_93006596_indelfwd/-/Gtattcatcaaaaatctatagccttccaaaagaaggagaaattaagatattcccatgacct03/11/1104/03/11134Genomicunknown
ss4992975741000GENOMES|20110316_indels_chr10_93016616_93016616fwd/-/Gatcaaaaatctatagccttccaaaagaaggagaaattaagatattcccat03/19/1203/19/12137Genomicunknown
ss552303090LUNTER|YRI_10_93006597-93006597fwd/-/Gatcaaaaatctatagccttccaaaagaaggagaaattaagatattcccat11/21/1211/21/12138Genomic95 %
ss554541786TISHKOFF|del_chr10_93016618-93016618fwd/-/Gtcaaaaatctatagccttccaaaagaaggagaaattaagatattcccatg11/22/1211/22/12138Genomicunknown
ss13699110681000GENOMES|PHASE3_V1_51229159fwd/-/Gatcaaaaatctatagccttccaaaagaaggagaaattaagatattcccat08/16/1408/17/14144Genomicunknown
ss1597452932EVA_DECODE|EVA_DECODE_10_93006596_708919_rs150540209fwd/-/Gatcaaaaatctatagccttccaaaagaaggagaaattaagatattcccat03/02/1503/04/15144Genomicunknown
ss1706846174EVA_UK10K_ALSPAC|EVA_UK10K_ALSPAC_10_93016616_28290175fwd/-/Gatcaaaaatctatagccttccaaaagaaggagaaattaagatattcccat03/04/1503/07/15144Genomicunknown
ss1706846456EVA_UK10K_TWINSUK|EVA_UK10K_TWINSUK_10_93016616_28290175fwd/-/Gatcaaaaatctatagccttccaaaagaaggagaaattaagatattcccat03/04/1503/07/15144Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs150540209|allelePos=51|totalLen=101|taxid=9606|snpclass=2|alleles='-/G'|mol=Genomic|build=144
 CTGTCAACTA GTTAAGTCTA TATTCATCAA AAATCTATAG CCTTCCAAAA
 N
 GAAGGAGAAA TTAAGATATT CCCATGACCT TGGATTTGGC AGTGGATTCT

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (Alleles in RefSNP orientation) . See additional population frequency from 1000Genome [here] back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterWith1000GenomeDataUNKNOWNUNKNOWNUNKNOWN

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