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Reference SNP (refSNP) Cluster Report: rs121907713                 
RefSNP
Organism:grape (Vitis vinifera)
Molecule Type:Genomic
Created/Updated in build:132/139
Map to Genome Build:100/Weight
Validation Status:
Allele
Variation Class:SNV:
single nucleotide variation
RefSNP Alleles:C/T (REV)
Allele Origin:
Ancestral Allele:Not available
MAF/MinorAlleleCount:NA
MAF Source:
Links
SNP Details are organized in the following sections:
GeneView Map Submission Fasta Resource Diversity Validation

  Integrated Maps (Hint: click on 'Chr Pos' to see variant in the new NCBI variation viewer) back to top

  GeneView back to top

GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A


  Submitter records for this RefSNP Cluster back to top
The submission ss212757645 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs121907713 during BLAST analysis for the current build.


NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss212757645CSHL-WARE|ENSVVVI00671801fwd/BC/Tctgaattttgatctaccccggtttgaattttatcattacctctacctcttgtctcaaggt03/31/1004/01/10132Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs121907713|allelePos=251|totalLen=501|taxid=29760|snpclass=1|alleles='C/T'|mol=Genomic|build=132
 ATGAAATGAA GTTCCTGAAT CCAAAACCCA ATCATCAAGT GGACTGTCTA TTGCAAGAAG
 TAATGCATCA TATACTTCTT CTGTTATAGC ATAAGCAGAA TCATCTTCAT TCTTCTTCTT
 AGGACTTTTG CATTGCCTTC TAAAGTGACC TGTTTTCCCA CAGTTCTAGC ATTGTATTTG
 TTGGCCTGAT CTAGATTTGC TTCTGTTCCG ATTAGAATTT CTGAATTTTG ATCTACCCCG
 GTTTGAATTT
 Y
 TATCATTACC TCTACCTCTT GTCTCAAGGT TTAGGGTAGA ACTAGATCCT AAGGTTTCGT
 CTACATCTCT TCGACGAATC TCCTCAACCA GAATTAAATC TTGTATATCA TTGTACTTGA
 GCTTTTCCTT TCCCGTAGAA TTGCTTACTA CAATCCTCAT TACCTCCTAA CTGTTTGGCA
 AAGAAGCCAA GACAATCAGA GCACAAATCT CATCATCAAA ATCAATTTCT ACAGACAACA
 ATTGATTTGT

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis

  Population Diversity (in rs orientation) Note: rs121907713 allele is reverse to the genome back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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