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Malaria / Mosquito BLAST Databases The Malaria/Mosquito BLAST databases were derived from several sources. The various Sequencing Center's FTP sites or Web sites that are accessible in the Eukaryotic Genome BLAST. It is no longer accessible from the Plasmodium Custom BLAST. GenBank submitted sequences arranged by organism (Plasmodium falciparum only, all Plasmodium, and all Toxoplasma) which are accessible from the GenBank BLAST. The FASTA file used in the CustomBlast are available for download () and are available on the FTP server for archival purpose. Much of this data is preliminary in nature and should be used with caution. Please review the NCBI data release policy. Additional BLAST access to the Plasmodium falciparum Genome sequence are also available at: BLAST at TIGR-- all chromosome BLAST at Sanger -- all chromosomes BLAST at Plasmodb - all chromosomes BLAST the Plasmodium falciparum / Plasmodium yoelli genomes -- all chromosomes. Malaria/Mosquito Custom BLAST Archive/ReadMe    P. falciparum Databases:  Source (Update Date)/FTP Site Chromosome 01 pf01_genome.n.gil/GenBank Chromosome 02 pf02_genome.n.gil Chromosome 03 pf03_genome.n.gil Chromosome 04 pf04_genome.n.gil Chromosome 05 pf05_genome.n.gil Chromosome 06 pf06_genome.n.gil Chromosome 07 pf07_genome.n.gil Chromosome 08 pf08_genome.n.gil Chromosome 09 pf09_genome.n.gil Chromosome 10 pf10_genome.n.gil Chromosome 11 pf11_genome.n.gil Chromosome 12 pf12_genome.n.gil Chromosome 13 pf13_genome.n.gil Chromosome 14 pf14_genome.n.gil       Complete Genome (nucleotide) p_falciparum.n.gil Go to BLAST P. falciparum Genome Complete Genome (protein) p_falciparum.p.gil Go to BLAST P. falciparum Genome   P. falciparum Trace Plasmodium_Falciparum_OTHER Go to TraceArchive MegaBlast Go to DiscontigTraceMegaBlast What is a Trace?       P. falciparum Dd2 EST P. falciparum Gene Seq Tag Project / pf_est.n.gil P. falciparum HB3 GSS P. falciparum Gene Seq Tag Project / pf_gss.n.gil P. falciparum full length cDNA Malaria Full Length cDNA Project (P. falciparum) (Dec 28-00) / U of Tokyo HTTP pf_cdna_tokyo.n.gil         P. berghei Databases:   P. berghei ANKA GSS P. berghei Gene Seq Tag Project (Nov-13-99) / UFL FTP Access pbgss (custom) Not included in Malaria Custom Blast P. berghei ANKA EST P. berghei Gene Seq Tag Project (Feb-15-00) / UFL FTP Access pbest (custom) Not included in Malaria Custom Blast P. berghei GSS pb_gss (list of gi) P. berghei EST pb_est (list of gi) P. berghei Contig Assembled RPBERG.contigs (Feb-18-03) P. berghei Partial Genome Shotgun Project / Sanger FTP pbcontig_assembled (custom) P. berghei Contig Unassembled unassembled.cons (Feb-18-03) P. berghei Partial Genome Shotgun Project / Sanger FTP pbcontig_unassembled (custom)         P. vivax Databases:   P. vivax Belem/ Salvador I GSS P. vivax Gene Seq Tag Project / UFL FTP Access pv_gss.n.gil P. vivax IVD10 YAC clone Sanger Centre P. vivax YAC Seq. Project (May-26-00) / Sanger FTP pvyac (custom)   P. vivax Shotgun sequence Only Available at TIGR P. vivax website TIGR P. vivax BLAST         P. chabaudi Databases:   P. chabaudi AS GSS P. chabaudi Project / Sanger FTP University of Glasgow GSS Project Go to Sanger P. chabaudi BLAST pc_gss.n.gil (list of gi) P. chabaudi contig assembled RPCHAB.contigs (Feb-18-03) P. chabaudi Partial Genome Shotgun Project / Sanger FTP pccontig_assembled (gnl custom) P. chabaudi contig unassembled chab.unassembled (Feb-18-03) P. chabaudi Partial Genome Shotgun Project / Sanger FTP pccontig_unassembled (gnl custom)         P. knowlesi Databases:   P. knowlesi genomic shotgun PKN.contigs.18.9.02 (Aug-18-02) P. knowlesi Partial Genome Shotgun Project / Sanger FTP  P. knowlesi Partial Genome Shotgun Project  Go to Sanger P. knowlesi BLAST pkcontig (custom)         P. reichenowi Databases:   P. reichenowi genomic shotgun reich.fasta (Jan-23-03) P. reichenowi Partial Genome Shotgun Project / Sanger FTP Go to Sanger P. reichenowi BLAST prshotgun (custom)         P. yoelii Databases:   Contigs (5x coverage) Pyoelii.NoAnnot.contig.fa [2.89MB] P. yoelii Genome Database (TIGR/NMRC) P. yoelii Genome Seq TIGR / FTP  Go to TIGR BLAST Singletons Pyoelii.NoAnnot.singleton.fa [6.60MB] P. yoelii Genome Database (TIGR/NMRC) P. yoelii Genome Seq TIGR / FTP  Go to TIGR BLAST Shotgun Genome (nucleotide) p_yoelii.n.gil -- same linked data used as BLAST P. falciparum Genome Genome (protein) p_yoelii.p.gil -- same linked data used as BLAST P. falciparum Genome         An. gambiaeDatabases:   An. gambiae STC plate_01 to plate_32 (Mar-4-99) / Genoscope > An. gambiae STC Sequence (Genoscope) > Go to Genoscope BLAST angstc (custom) An. gambiae scaffold agambiae_scaff_gi.n.gil -- same linked data used as BLAST Drosophilae/An gambiae Genomes An. gambiae proteins agambiae_prot_gi.p.gil-- same linked data used as BLAST Drosophilae/An gambiae Genomes           Malaria GenBank BLAST   P. falciparum only, all Plasmodium, all Toxoplasma Databases nr (NonRedundant) GenBank, BLAST databases ESTs (Expressed Sequence Tags) dbEST, Division Info GSSs (Genomic Survey Sequences) dbGSS, Division Info STS (Sequence Tag Sites) dbSTS, Division Info HTGS (High Throughput Genome Seq.) HTGS, Division Info Revised: April 13, 2005 Disclaimer | Write to the Help Desk NCBI | NLM | NIH