Malaria Genetics & Genomics African tree rats are closely related to field mice, and the laboratory rat and mouse. Their natural habitat is the gallery forests found lining streams and rivers, where they build nests of leaves at heights of 2 to 3 m above ground. Colonies of thicket rats have been introduced into the laboratory for use in parasitological studies, with limited sucess due to their poor breeding performance under laboratory conditions.
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   Reference table for P. chabaudi genome markers

 List of References

Probe Number

Marker Name

Accession Number/ Reference

Information

1

Ca2+ATPase GENE

X55197

P. yoelii Ca2+-ATPase

2

235 kDa

Ref [1]

P. yoelii 235 kDa virulence antigen gene

3

pBS 110

Ref [14]

P. chabaudi schizont-specific gene

4

MSP1

M61203

P. chabaudi major merozoite surface protein gene

5

PcEMA1

M95789

P. chabaudi PcEMA1 acidic phosphoprotein gene

6

DHFR-TS

M30834

P. chabaudi dihydrofolate reductase-thymidylate synthase gene

7

mdr-1

Ref [2]

P. chabaudi multi-drug resistance gene

8

TBP

L06060

P. falciparum TATA-binding protein gene

9

Enolase

U00152

P. falciparum enolase gene

10

DHPS

Z30658

P. falciparum dihydropteroate synthetase gene

11

H2A

M86865

P. falciparum histone 2A gene

12

CSP

M28887

P. berghei circumsporozoite protein gene

13

RPIII

M73770

P. falciparum RNA polymerase III gene

14

5S rRNA

M19136

P. falciparum 5S rRNA gene

15

EF1-a

X60488

P. falciparum elongation factor gene

16

CRK2

AJ224152

P. berghei cdc2-related kinase 2 gene

17

VAP A

L08200

P. falciparum vacuolar ATPase subunit A gene

18

VAP B

U03915

P. falciparum vacuolar ATPase subunit B gene

19

G6PD

X74988

P. falciparum glucose 6 phospate dehydrogenase gene

20

hsp-70

J04005

P. chabaudi heat shock protein gene

21

CRK1

X80759

P. falciparum cdc2-related protein kinase-1 gene

22

MAP-1

X82646

P. falciparum mitogen-activated protein kinase gene

23

CRK3

X87839

P. falciparum cdc2-related protein kinase-3 gene

24

DNA pol a

L18785

P. falciparum DNA polymerase a gene

25

DNA pol d

X62423

P. falciparum DNA polymerase d gene

26

SSPII

M84732

P. yoelii sporozoite surface protein 2 gene

27

Topo I

X83758

P. falciparum topoisomerase I gene

28

Topo II

X79345

P. falciparum topoisomerase II gene

29

PCNA

X68739

P. falciparum proliferating cell nuclear antigen gene

30

GPI

J05544

P. falciparum glucose phosphate isomerase gene

31

GGMP

L05517

P. chabaudi GGMP repeat gene

32

Calmodulin

M59770

P. falciparum calmodulin gene

33

Pcsv4

Ref [3]

P. chabaudi fingerprinting probe

34

RESA

AF019972

P. chabaudi RESA gene

35

aI tubulin

X15979

P. falciparum a I tubulin gene

36

aII tubulin

M34390

P. falciparum a II tubulin gene

37

aldo-1

M81793

P. berghei aldolase-1 gene

38

b tubulin

M58750

P. berghei b tubulin gene

39

AMA1

M25248

P. chabaudi apical membrane antigen gene

40

ran

X73954

P. falciparum Ran/TC4 GTPase gene

41

RNA pol II

X61281

P. berghei RNA polymerase II gene

42

cDNA 167

Ref [4],
Ref [5]

Uncharacterized P. chabaudi cDNA clone

43

cDNA 121

Ref [4],
Ref [5]

Uncharacterized P. chabaudi cDNA clone

44

cDNA 365

Ref [4],
Ref [5]

Uncharacterized P. chabaudi cDNA clone

45

cDNA 148

Ref [4],
Ref [5]

P. chabaudi 37 kDa antigen gene

46

Ag3008

Ref [6]

P. chabaudi 24 kDa parasitophorous vacuole membrane protein gene

47

Ag3003A

Ref [6]

P. chabaudi gene, protein reacts strongly with hyperimmune serum

48

Ag3003B

Ref [6]

P. chabaudi gene, protein does not react with hyperimmune serum

49

Ag3020

Ref [6]

Uncharacterized P. chabaudi cDNA clone

50

Ag3024

Ref [6]

Uncharacterized P. chabaudi cDNA clone

51

Ag3015

Ref [6]

Uncharacterized P. chabaudi cDNA clone

52

Ag3027

Ref [6]

Uncharacterized P. chabaudi cDNA clone

53

Ag3042A

Ref [6]

Probably non-coding P. chabaudi clone

54

Ag3042B

Ref [6]

P. chabaudi cDNA, cross-hybridises with EDGA (exported dense-granule antigen) cDNA

55

Ag3010

Ref [6]

Uncharacterised P. chabaudi cDNA clone

56

Ag3012

Ref [6]

Uncharacterised P. chabaudi cDNA clone

57

Ag3035

Ref [6]

P. chabaudi cDNA, protein reacts strongly with hyperimmune serum

58

Ag3037

Ref [6]

Uncharacterised P. chabaudi cDNA clone

59

Ag3040

Ref [6]

Uncharacterised P. chabaudi cDNA clone

60

Ag3062

Ref [6]

Uncharacterised P. chabaudi cDNA clone

61

Ag3057

Ref [6]

Uncharacterised P. chabaudi cDNA clone

62

9.2

Ref [7]

P. berghei anonymous probe

63

7.1

Ref [7]

P. berghei anonymous probe

64

SPII

Ref [7]

P. berghei anonymous probe

65

4.1

Ref [7]

P. berghei anonymous probe

66

2.2

Ref [7]

P. berghei anonymous probe

67

1.9

Ref [7]

P. berghei anonymous probe

68

3.50

Ref [7]

P. berghei anonymous probe

69

3.18

Ref [7]

P. berghei anonymous probe

70

HPII2

Ref [7]

P. berghei anonymous probe

71

X-ORF

Ref [8]

P. berghei unidentified open reading frame

72

SSU rRNA

Ref [9]

P. berghei small subunit ribosomal RNA gene

73

ADPRF

Ref [8]

P. berghei ADP ribosylation factor

74

S21

Ref [10]

P. berghei 21kDa ookinete surface antigen gene

75

UFP

Ref [11]

Dictyostelium discoideum ubiquitin fusion protein

76

HK

M92054

P. falciparum hexokinase gene

77

CP

U33420

P. berghei cysteine proteinase gene

78

PM

AJ223308

P. berghei plasmepsin gene

79

TCTP

Ref [12]

P. falciparum translationally controlled tumour protein gene

80

PGK

M59249

P. falciparum phosphoglycerate kinase gene

81

OPL-04

Ref [13]

P. chabaudi RAPD marker

82

OPL-12

Ref [13]

P. chabaudi RAPD marker

83

OPL-16

Ref [13]

P. chabaudi RAPD marker

84

OPR-02

Ref [13]

P. chabaudi RAPD marker

85

OPR-14

Ref [13]

P. chabaudi RAPD marker

86

OPL-08

Ref [13]

P. chabaudi RAPD marker

87

OPL-13

Ref [13]

P. chabaudi RAPD marker

88

P.1

Ref [14]

P. chabaudi anonymous marker

89

P.9

Ref [14]

P. chabaudi anonymous marker

90

P.10

J. Carlton, University of Edinburgh, U.K.

P. chabaudi anonymous marker

91

P.12

Ref [14]

P. chabaudi anonymous marker

92

P.13

J. Carlton, University of Edinburgh, U.K.

P. chabaudi anonymous marker

93

P.22

Ref [14]

P. chabaudi anonymous marker

94

P.23

Ref [14]

P. chabaudi anonymous marker

95

P.29

Ref [14]

P. chabaudi anonymous marker

96

P.36

J. Carlton, University of Edinburgh, U.K.

P. chabaudi anonymous marker

97

P.38

J. Carlton, University of Edinburgh, U.K.

P. chabaudi anonymous marker

98

pcpS590.7

Ref [14]

P. chabaudi putative homolog to P. falciparum pS590.7 chloroquine resistance marker (AF030694)

99

hsp86

G37828

P. falciparum heat shock protein 86

 

Last updated: May 17, 1999

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