|
Abelson murine leukemia virus
|
2 |
2 |
1
|
|
Acidithiobacillus ferrooxidans
|
1 |
1 |
1
|
|
Acinetobacter sp. ADP1
|
1 |
1 |
1
|
|
Adeno-associated virus - 1
|
1 |
1 |
1
|
|
Adeno-associated virus - 2
|
14 |
7 |
9
|
|
Aedes aegypti (yellow fever mosquito)
|
1 |
1 |
1
|
|
Aeromonas phage Aeh1
|
2 |
1 |
2
|
|
Aeromonas salmonicida subsp. salmonicida
|
1 |
1 |
1
|
|
Aeropyrum pernix K1
|
13 |
12 |
12
|
|
African horsesickness virus
|
1 |
1 |
1
|
|
African swine fever virus
|
8 |
8 |
6
|
|
Agrobacterium rhizogenes
|
1 |
1 |
1
|
|
Agrobacterium tumefaciens
|
16 |
13 |
11
|
|
Agrobacterium tumefaciens str. C58
|
43 |
33 |
39
|
|
Alcelaphine herpesvirus 1 (wildebeest herpesvirus)
|
1 |
1 |
1
|
|
Alfalfa mosaic virus
|
1 |
1 |
1
|
|
Anabaena variabilis ATCC 29413
|
1 |
1 |
1
|
|
Anopheles gambiae str. PEST
|
27 |
21 |
23
|
|
Apis mellifera (honey bee)
|
38 |
34 |
29
|
|
Apple latent spherical virus
|
1 |
1 |
1
|
|
Aquifex aeolicus VF5
|
14 |
14 |
11
|
|
Arabidopsis thaliana (thale cress)
|
3115 |
2316 |
1955
|
|
Archaeoglobus fulgidus DSM 4304
|
19 |
18 |
18
|
|
Ashbya gossypii ATCC 10895
|
3 |
3 |
3
|
|
Aspergillus clavatus NRRL 1
|
1 |
1 |
1
|
|
Aspergillus fumigatus Af293
|
25 |
23 |
23
|
|
Aspergillus nidulans FGSC A4
|
16 |
14 |
15
|
|
Aspergillus oryzae RIB40
|
1 |
1 |
1
|
|
Autographa californica nucleopolyhedrovirus
|
10 |
10 |
7
|
|
Avian metapneumovirus
|
1 |
1 |
1
|
|
Azoarcus sp. BH72
|
1 |
1 |
1
|
|
BK polyomavirus
|
1 |
1 |
1
|
|
Bacillus amyloliquefaciens FZB42
|
1 |
1 |
1
|
|
Bacillus anthracis str. 'Ames Ancestor'
|
22 |
20 |
11
|
|
Bacillus anthracis str. A2012
|
2 |
2 |
2
|
|
Bacillus anthracis str. Ames
|
9 |
5 |
8
|
|
Bacillus anthracis str. Sterne
|
3 |
2 |
3
|
|
Bacillus cereus ATCC 10987
|
3 |
3 |
2
|
|
Bacillus cereus ATCC 14579
|
13 |
13 |
11
|
|
Bacillus cereus E33L
|
7 |
7 |
7
|
|
Bacillus cereus subsp. cytotoxis NVH 391-98
|
1 |
1 |
1
|
|
Bacillus halodurans C-125
|
6 |
6 |
6
|
|
Bacillus licheniformis ATCC 14580
|
5 |
5 |
4
|
|
Bacillus phage GA-1
|
1 |
1 |
1
|
|
Bacillus phage SPP1
|
1 |
1 |
1
|
|
Bacillus phage phi29
|
7 |
6 |
6
|
|
Bacillus subtilis subsp. subtilis str. 168
|
414 |
304 |
300
|
|
Bacillus thuringiensis
|
1 |
1 |
1
|
|
Bacillus thuringiensis serovar israelensis
|
4 |
3 |
3
|
|
Bacillus thuringiensis serovar konkukian str. 97-27
|
3 |
2 |
3
|
|
Bacteroides fragilis NCTC 9343
|
3 |
3 |
3
|
|
Bacteroides thetaiotaomicron VPI-5482
|
2 |
2 |
2
|
|
Bamboo mosaic virus
|
1 |
1 |
1
|
|
Banna virus
|
1 |
1 |
1
|
|
Barley stripe mosaic virus
|
1 |
1 |
1
|
|
Bartonella quintana str. Toulouse
|
3 |
1 |
3
|
|
Beet curly top virus
|
1 |
1 |
1
|
|
Beet necrotic yellow vein virus
|
1 |
1 |
1
|
|
Beet yellows virus
|
2 |
2 |
1
|
|
Bhendi yellow vein mosaic virus
|
1 |
1 |
1
|
|
Bhendi yellow vein mosaic virus satellite DNA beta
|
1 |
1 |
1
|
|
Bifidobacterium longum NCC2705
|
2 |
2 |
2
|
|
Bluetongue virus
|
5 |
5 |
5
|
|
Bombyx mori (domestic silkworm)
|
48 |
37 |
41
|
|
Bombyx mori NPV
|
6 |
6 |
5
|
|
Bordetella bronchiseptica RB50
|
10 |
7 |
9
|
|
Bordetella parapertussis 12822
|
2 |
1 |
2
|
|
Bordetella pertussis Tohama I
|
15 |
13 |
7
|
|
Borna disease virus
|
6 |
6 |
4
|
|
Borrelia afzelii PKo
|
2 |
2 |
2
|
|
Borrelia burgdorferi B31
|
51 |
36 |
29
|
|
Borrelia garinii PBi
|
1 |
1 |
1
|
|
Bos indicus (zebu)
|
2 |
2 |
2
|
|
Bos taurus (cattle)
|
1945 |
1540 |
893
|
|
Bovine coronavirus
|
3 |
1 |
3
|
|
Bovine herpesvirus 1
|
13 |
11 |
7
|
|
Bovine herpesvirus 5
|
1 |
1 |
1
|
|
Bovine immunodeficiency virus
|
3 |
3 |
2
|
|
Bovine papillomavirus - 1
|
15 |
13 |
5
|
|
Bovine papular stomatitis virus
|
1 |
1 |
1
|
|
Bovine respiratory syncytial virus
|
1 |
1 |
1
|
|
Bovine viral diarrhea virus 1
|
3 |
3 |
1
|
|
Bradyrhizobium japonicum USDA 110
|
30 |
23 |
25
|
|
Brome mosaic virus
|
3 |
2 |
2
|
|
Brucella abortus bv. 1 str. 9-941
|
4 |
3 |
4
|
|
Brucella melitensis 16M
|
2 |
2 |
2
|
|
Brucella melitensis biovar Abortus 2308
|
4 |
2 |
4
|
|
Brucella suis 1330
|
8 |
6 |
7
|
|
Bunyamwera virus
|
1 |
1 |
1
|
|
Burkholderia cenocepacia AU 1054
|
2 |
2 |
2
|
|
Burkholderia mallei ATCC 23344
|
1 |
1 |
1
|
|
Burkholderia pseudomallei K96243
|
8 |
7 |
5
|
|
Burkholderia xenovorans LB400
|
3 |
3 |
2
|
|
Caenorhabditis elegans (nematode)
|
1579 |
1111 |
948
|
|
Campylobacter coli
|
1 |
1 |
1
|
|
Campylobacter jejuni RM1221
|
1 |
1 |
1
|
|
Campylobacter jejuni subsp. jejuni 81-176
|
2 |
2 |
2
|
|
Campylobacter jejuni subsp. jejuni 81116
|
1 |
1 |
1
|
|
Campylobacter jejuni subsp. jejuni NCTC 11168
|
30 |
23 |
29
|
|
Candida albicans SC5314
|
55 |
47 |
47
|
|
Candida glabrata CBS 138
|
7 |
4 |
7
|
|
Candidatus Pelagibacter ubique HTCC1062
|
1 |
1 |
1
|
|
Canine distemper virus
|
3 |
3 |
2
|
|
Canine parvovirus
|
1 |
1 |
1
|
|
Canis lupus familiaris (dog)
|
623 |
475 |
429
|
|
Carboxydothermus hydrogenoformans Z-2901
|
1 |
1 |
1
|
|
Caulobacter crescentus CB15
|
39 |
24 |
32
|
|
Cercopithecine herpesvirus 15 (Rhesus lymphocryptovirus)
|
1 |
1 |
1
|
|
Cercopithecine herpesvirus 8 (Rhesus cytomegalovirus)
|
1 |
1 |
1
|
|
Cercopithecine herpesvirus 9 (Simian varicella virus)
|
1 |
1 |
1
|
|
Cereal yellow dwarf virus - RPS
|
1 |
1 |
1
|
|
Chicken anemia virus
|
8 |
8 |
1
|
|
Chlamydia muridarum Nigg
|
2 |
2 |
2
|
|
Chlamydia trachomatis A/HAR-13
|
2 |
2 |
2
|
|
Chlamydia trachomatis D/UW-3/CX
|
9 |
8 |
7
|
|
Chlamydia trachomatis L2b/UCH-1/proctitis
|
1 |
1 |
1
|
|
Chlamydomonas reinhardtii
|
18 |
17 |
16
|
|
Chlamydophila abortus S26/3
|
1 |
1 |
1
|
|
Chlamydophila pneumoniae AR39
|
5 |
5 |
5
|
|
Chlamydophila pneumoniae CWL029
|
2 |
2 |
2
|
|
Chlamydophila pneumoniae TW-183
|
2 |
2 |
2
|
|
Chlorobium tepidum TLS
|
18 |
11 |
16
|
|
Chromobacterium violaceum ATCC 12472
|
3 |
1 |
3
|
|
Ciona intestinalis
|
31 |
22 |
27
|
|
Citrus tristeza virus
|
1 |
1 |
1
|
|
Classical swine fever virus
|
8 |
8 |
1
|
|
Clostridium acetobutylicum ATCC 824
|
8 |
6 |
8
|
|
Clostridium botulinum A str. ATCC 3502
|
2 |
2 |
2
|
|
Clostridium botulinum F str. Langeland
|
1 |
1 |
1
|
|
Clostridium difficile 630
|
2 |
2 |
2
|
|
Clostridium kluyveri DSM 555
|
1 |
1 |
1
|
|
Clostridium perfringens
|
1 |
1 |
1
|
|
Clostridium perfringens ATCC 13124
|
1 |
1 |
1
|
|
Clostridium perfringens SM101
|
2 |
2 |
2
|
|
Clostridium perfringens str. 13
|
12 |
11 |
7
|
|
Clostridium tetani E88
|
2 |
2 |
2
|
|
Clostridium thermocellum ATCC 27405
|
2 |
1 |
2
|
|
Colwellia psychrerythraea 34H
|
1 |
1 |
1
|
|
Corynebacterium diphtheriae NCTC 13129
|
10 |
8 |
7
|
|
Corynebacterium glutamicum ATCC 13032
|
45 |
35 |
43
|
|
Corynebacterium glutamicum R
|
1 |
1 |
1
|
|
Corynebacterium jeikeium
|
1 |
1 |
1
|
|
Cottontail rabbit papillomavirus
|
1 |
1 |
1
|
|
Cowpea chlorotic mottle virus
|
1 |
1 |
1
|
|
Cowpox virus
|
1 |
1 |
1
|
|
Cryptococcus neoformans var. neoformans JEC21
|
13 |
11 |
9
|
|
Cryptosporidium hominis TU502
|
1 |
1 |
1
|
|
Cryptosporidium parvum Iowa II
|
2 |
2 |
2
|
|
Cucumber mosaic virus (cucumber mosaic cucumovirus)
|
4 |
3 |
3
|
|
Cucumber necrosis virus
|
1 |
1 |
1
|
|
Cymbidium mosaic virus
|
1 |
1 |
1
|
|
Cypovirus 1
|
1 |
1 |
1
|
|
Danio rerio (zebrafish)
|
1846 |
1333 |
1165
|
|
Debaryomyces hansenii CBS767
|
1 |
1 |
1
|
|
Deinococcus geothermalis DSM 11300
|
1 |
1 |
1
|
|
Deinococcus radiodurans R1
|
29 |
27 |
25
|
|
Dengue virus 1
|
1 |
1 |
1
|
|
Dengue virus 2
|
12 |
12 |
1
|
|
Desulfovibrio desulfuricans subsp. desulfuricans str. G20
|
1 |
1 |
1
|
|
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
|
12 |
9 |
12
|
|
Dichelobacter nodosus VCS1703A
|
2 |
1 |
2
|
|
Dictyostelium discoideum AX4
|
59 |
48 |
50
|
|
Drosophila melanogaster (fruit fly)
|
5856 |
4083 |
2081
|
|
Ectocarpus siliculosus virus 1
|
1 |
1 |
1
|
|
Ectromelia virus
|
3 |
2 |
3
|
|
Ehrlichia ruminantium str. Welgevonden
|
1 |
1 |
1
|
|
Emiliania huxleyi virus 86
|
1 |
1 |
1
|
|
Encephalitozoon cuniculi GB-M1
|
4 |
4 |
3
|
|
Encephalomyocarditis virus
|
1 |
1 |
1
|
|
Entamoeba histolytica HM-1:IMSS
|
6 |
6 |
5
|
|
Enterobacteria phage 933W
|
2 |
2 |
2
|
|
Enterobacteria phage M13
|
2 |
2 |
2
|
|
Enterobacteria phage Mu
|
1 |
1 |
1
|
|
Enterobacteria phage N15
|
4 |
4 |
4
|
|
Enterobacteria phage N4
|
1 |
1 |
1
|
|
Enterobacteria phage P1
|
3 |
3 |
3
|
|
Enterobacteria phage P2
|
1 |
1 |
1
|
|
Enterobacteria phage P22
|
6 |
6 |
4
|
|
Enterobacteria phage P4
|
2 |
1 |
2
|
|
Enterobacteria phage RB69
|
4 |
4 |
1
|
|
Enterobacteria phage T3
|
1 |
1 |
1
|
|
Enterobacteria phage T4
|
53 |
43 |
37
|
|
Enterobacteria phage T5
|
1 |
1 |
1
|
|
Enterobacteria phage T7
|
15 |
14 |
5
|
|
Enterobacteria phage lambda
|
11 |
9 |
7
|
|
Enterobacterio phage MS2
|
1 |
1 |
1
|
|
Enterococcus faecalis
|
5 |
5 |
3
|
|
Enterococcus faecalis V583
|
12 |
8 |
12
|
|
Epiphyas postvittana NPV
|
1 |
1 |
1
|
|
Equid herpesvirus 1 (Equine herpesvirus 1)
|
2 |
2 |
2
|
|
Equine arteritis virus
|
3 |
3 |
1
|
|
Equine infectious anemia virus
|
2 |
2 |
1
|
|
Equus caballus (horse)
|
42 |
29 |
36
|
|
Erythrobacter litoralis HTCC2594
|
1 |
1 |
1
|
|
Escherichia coli
|
48 |
43 |
40
|
|
Escherichia coli 536
|
1 |
1 |
1
|
|
Escherichia coli APEC O1
|
10 |
9 |
10
|
|
Escherichia coli CFT073
|
73 |
68 |
66
|
|
Escherichia coli E24377A
|
5 |
5 |
5
|
|
Escherichia coli HS
|
8 |
7 |
8
|
|
Escherichia coli O157:H7 EDL933
|
40 |
36 |
36
|
|
Escherichia coli O157:H7 str. Sakai
|
34 |
29 |
27
|
|
Escherichia coli SMS-3-5
|
1 |
1 |
1
|
|
Escherichia coli UTI89
|
15 |
15 |
14
|
|
Escherichia coli str. K12 substr. DH10B
|
18 |
15 |
18
|
|
Escherichia coli str. K12 substr. MG1655
|
3367 |
2650 |
1454
|
|
Feline foamy virus
|
1 |
1 |
1
|
|
Feline immunodeficiency virus
|
5 |
5 |
2
|
|
Feline leukemia virus
|
1 |
1 |
1
|
|
Felis catus (domestic cat)
|
63 |
52 |
46
|
|
Foot-and-mouth disease virus - type O
|
1 |
1 |
1
|
|
Fowlpox virus
|
1 |
1 |
1
|
|
Francisella tularensis subsp. holarctica
|
2 |
1 |
2
|
|
Francisella tularensis subsp. novicida U112
|
4 |
3 |
4
|
|
Francisella tularensis subsp. tularensis SCHU S4
|
2 |
2 |
2
|
|
Gallid herpesvirus 1
|
5 |
3 |
5
|
|
Gallid herpesvirus 2 (Marek's disease virus type 1)
|
6 |
6 |
5
|
|
Gallid herpesvirus 3 (Marek's disease virus type 2)
|
2 |
1 |
2
|
|
|