
	NCBI Home Entrez Gene GeneRIF GeneRIF Statistics

GeneRIF Statistics

As of May 28, 2012

Totals

712549	GeneRIFs
415061	Distinct publications
67923	Genes carrying GeneRIFs
1221	Taxa with GeneRIFs

(What's being counted?)

History


GeneRIFs	Publications	Genes	Taxa

Counts by Source

Source	GeneRIFs	Distinct Publications	Genes	Taxa
Source
NLM Index Section	579448	386725	63978	1202
NIAID HIV project	35	65	21	2
EcoGene	874	778	874	1
HuGENet	125971	54065	11034	15
General public	6221	3982	4584	158
Totals	712549	415061	67923	1221

Counts by Organism

Organism	GeneRIFs	Distinct Publications	Genes
Organism
Abelson murine leukemia virus	3	3	1
Abutilon mosaic virus	1	1	1
Acanthamoeba polyphaga mimivirus	5	5	5
Acaryochloris marina MBIC11017	1	1	1
Acetobacter pasteurianus IFO 3283-01	2	2	2
Acholeplasma laidlawii PG-8A	1	1	1
Achromobacter xylosoxidans A8	1	1	1
Acidianus filamentous virus 1	2	2	2
Acidithiobacillus ferrooxidans	1	1	1
Acidithiobacillus ferrooxidans ATCC 23270	8	8	8
Acidithiobacillus ferrooxidans ATCC 53993	1	1	1
Acinetobacter baumannii	1	1	1
Acinetobacter baumannii AB0057	2	2	2
Acinetobacter baumannii AB307-0294	2	2	2
Acinetobacter baumannii ACICU	1	1	1
Acinetobacter baumannii ATCC 17978	1	1	1
Acinetobacter sp. ADP1	2	2	2
Actinobacillus pleuropneumoniae serovar 3 str. JL03	5	5	5
Actinobacillus pleuropneumoniae serovar 5b str. L20	5	5	4
Actinobacillus pleuropneumoniae serovar 7 str. AP76	1	1	1
Acyrthosiphon pisum (pea aphid)	6	4	6
Adeno-associated virus - 1	2	2	1
Adeno-associated virus - 2	17	10	9
Adeno-associated virus - 8	1	1	1
Aedes aegypti (yellow fever mosquito)	50	33	46
Aeromonas hydrophila	1	1	1
Aeromonas hydrophila subsp. hydrophila ATCC 7966	4	4	4
Aeromonas phage Aeh1	3	2	2
Aeromonas salmonicida subsp. salmonicida	2	2	1
Aeropyrum pernix K1	23	22	21
African cassava mosaic virus	1	1	1
African horsesickness virus	3	3	3
African swine fever virus	23	22	16
Aggregatibacter actinomycetemcomitans D11S-1	1	1	1
Agrobacterium rhizogenes	1	1	1
Agrobacterium tumefaciens	29	20	18
Agrobacterium tumefaciens str. C58	75	56	62
Aichi virus	1	1	1
Ailuropoda melanoleuca (giant panda)	3	3	3
Ajellomyces capsulatus NAm1	1	1	1
Alcelaphine herpesvirus 1 (wildebeest herpesvirus)	1	1	1
Alfalfa mosaic virus	1	1	1
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446	2	2	1
Alkalilimnicola ehrlichii MLHE-1	2	2	2
Alkaliphilus oremlandii OhILAs	1	1	1
Alphapapillomavirus 4	1	1	1
Alphapapillomavirus 7	69	58	7
Alternanthera mosaic virus	1	1	1
Ambystoma tigrinum virus	1	1	1
Amycolatopsis mediterranei U32	1	1	1
Anabaena variabilis ATCC 29413	2	2	2
Anaplasma phagocytophilum HZ	2	1	2
Anatid herpesvirus 1	6	6	6
Andes virus	3	3	2
Anolis carolinensis (green anole)	2	2	2
Anopheles gambiae str. PEST	70	54	48
Anticarsia gemmatalis nucleopolyhedrovirus	1	1	1
Apis mellifera (honey bee)	101	79	77
Apis mellifera ligustica (common honey bee)	1	1	1
Aplysia californica (California sea hare)	1	1	1
Apple latent spherical virus	1	1	1
Apple stem grooving virus	1	1	1
Aquifex aeolicus VF5	33	31	27
Arabidopsis lyrata subsp. lyrata	3	3	3
Arabidopsis thaliana (thale cress)	8515	5948	3935
Arcanobacterium haemolyticum DSM 20595	1	1	1
Archaeoglobus fulgidus DSM 4304	26	25	25
Arthrobacter aurescens TC1	1	1	1
Arthrobacter nitroguajacolicus Rue61a	2	2	2
Arthroderma benhamiae CBS 112371	1	1	1
Artibeus jamaicensis (Jamaican fruit-eating bat)	1	1	1
Ashbya gossypii ATCC 10895	10	8	10
Aspergillus clavatus NRRL 1	1	1	1
Aspergillus flavus NRRL3357	5	5	3
Aspergillus fumigatus Af293	72	62	59
Aspergillus nidulans FGSC A4	39	34	32
Aspergillus niger CBS 513.88	7	5	7
Aspergillus oryzae RIB40	21	14	17
Autographa californica nucleopolyhedrovirus	61	53	32
Avian leukosis virus	3	3	2
Avian metapneumovirus	5	5	3
Avian orthoreovirus	1	1	1
Azoarcus sp. BH72	1	1	1
Azorhizobium caulinodans ORS 571	2	2	2
Azotobacter vinelandii DJ	25	14	20
BK polyomavirus	8	8	2
Babesia bovis T2Bo	1	1	1
Bacillus amyloliquefaciens FZB42	5	5	4
Bacillus anthracis (anthrax)	3	3	2
Bacillus anthracis str. 'Ames Ancestor'	72	61	35
Bacillus anthracis str. A0248	5	4	4
Bacillus anthracis str. A2012	2	2	2
Bacillus anthracis str. Ames	17	12	16
Bacillus anthracis str. CDC 684	1	1	1
Bacillus anthracis str. Sterne	14	12	13
Bacillus cereus	1	1	1
Bacillus cereus 03BB102	3	2	3
Bacillus cereus AH820	1	1	1
Bacillus cereus ATCC 10987	5	5	4
Bacillus cereus ATCC 14579	27	25	21
Bacillus cereus E33L	11	11	9
Bacillus cereus G9842	1	1	1
Bacillus cereus biovar anthracis str. CI	1	1	1
Bacillus cytotoxicus NVH 391-98	1	1	1
Bacillus halodurans C-125	12	11	12
Bacillus licheniformis DSM 13 = ATCC 14580	10	10	8
Bacillus megaterium DSM 319	2	1	2
Bacillus phage GA-1	1	1	1
Bacillus phage PZA	7	6	6
Bacillus phage SPP1	1	1	1
Bacillus phage phi29	7	7	5
Bacillus pumilus SAFR-032	1	1	1
Bacillus subtilis subsp. spizizenii TU-B-10	1	1	1
Bacillus subtilis subsp. spizizenii str. W23	6	6	6
Bacillus subtilis subsp. subtilis str. 168	785	558	510
Bacillus thuringiensis	1	1	1
Bacillus thuringiensis serovar israelensis	17	15	9
Bacillus thuringiensis serovar konkukian str. 97-27	8	5	8
Bacteroides fragilis NCTC 9343	96	20	93
Bacteroides helcogenes P 36-108	1	1	1
Bacteroides thetaiotaomicron VPI-5482	10	10	10
Bacteroides vulgatus ATCC 8482	3	3	2
Bamboo mosaic virus	4	3	2
Banna virus	1	1	1
Barley stripe mosaic virus	1	1	1
Bartonella henselae str. Houston-1	4	3	4
Bartonella quintana str. Toulouse	3	1	3
Bat SARS CoV Rp3/2004	1	1	1
Bat coronavirus HKU3	1	1	1
Bdellovibrio bacteriovorus HD100	9	4	9
Bean dwarf mosaic virus	1	1	1
Beet curly top virus	2	2	1
Beet necrotic yellow vein virus	4	4	2
Beet yellows virus	2	2	1
Bhendi yellow vein betasatellite	1	1	1
Bhendi yellow vein mosaic virus	1	1	1
Bifidobacterium adolescentis ATCC 15703	3	3	2
Bifidobacterium longum NCC2705	2	2	2
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222	2	1	2
Blackcurrant reversion virus	1	1	1
Bluetongue virus	9	9	7
Bombyx mori (domestic silkworm)	210	158	166
Bombyx mori NPV	28	27	22
Bordetella avium 197N	2	1	2
Bordetella bronchiseptica RB50	17	13	16
Bordetella parapertussis 12822	2	1	2
Bordetella pertussis Tohama I	26	24	11
Bordetella petrii DSM 12804	1	1	1
Borna disease virus	13	13	6
Borrelia afzelii PKo	2	2	2
Borrelia burgdorferi 118a	1	1	1
Borrelia burgdorferi 156a	2	2	2
Borrelia burgdorferi 297	3	2	2
Borrelia burgdorferi 64b	2	2	1
Borrelia burgdorferi B31	121	94	67
Borrelia burgdorferi ZS7	6	4	6
Borrelia garinii PBi	2	2	1
Bos indicus (zebu)	2	2	2
Bos taurus (cattle)	4030	3020	1501
Botryotinia fuckeliana B05.10	4	4	4
Bovine coronavirus	5	3	4
Bovine ephemeral fever virus	2	1	2
Bovine herpesvirus 1	32	28	11
Bovine herpesvirus 4	1	1	1
Bovine herpesvirus 5	2	2	2
Bovine immunodeficiency virus	3	3	2
Bovine papular stomatitis virus	2	2	2
Bovine respiratory syncytial virus	1	1	1
Bovine viral diarrhea virus 1	10	10	1
Brachyspira hyodysenteriae WA1	2	1	2
Bradyrhizobium japonicum USDA 110	43	32	32
Bradyrhizobium sp. BTAi1	1	1	1
Bradyrhizobium sp. ORS 278	2	1	2
Branchiostoma floridae (Florida lancelet)	1	1	1
Brome mosaic virus	7	6	3
Brucella abortus bv. 1 str. 9-941	8	6	8
Brucella melitensis biovar Abortus 2308	19	12	18
Brucella melitensis bv. 1 str. 16M	8	8	7
Brucella microti CCM 4915	1	1	1
Brucella suis 1330	13	8	10
Brugia malayi (agent of lymphatic filariasis)	3	3	3
Bunyamwera virus	5	5	2
Burkholderia cenocepacia AU 1054	2	2	2
Burkholderia cenocepacia J2315	15	9	15
Burkholderia glumae BGR1	1	1	1
Burkholderia mallei ATCC 23344	3	3	3
Burkholderia multivorans ATCC 17616	1	1	1
Burkholderia pseudomallei 1710b	7	7	7
Burkholderia pseudomallei 406e	1	1	1
Burkholderia pseudomallei K96243	21	20	15
Burkholderia pseudomallei MSHR346	1	1	1
Burkholderia thailandensis E264	3	3	3
Burkholderia xenovorans LB400	12	8	11
Cabbage leaf curl virus	1	1	1
Caenorhabditis elegans (nematode)	3037	2110	1500
Caenorhabditis remanei	1	1	1
Caldicellulosiruptor saccharolyticus DSM 8903	3	2	3
Callithrix jacchus (white-tufted-ear marmoset)	5	4	5
Campylobacter coli	1	1	1
Campylobacter jejuni RM1221	2	2	2
Campylobacter jejuni subsp. jejuni 81-176	15	13	15
Campylobacter jejuni subsp. jejuni 81116	4	4	4
Campylobacter jejuni subsp. jejuni ICDCCJ07001	1	1	1
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	83	64	74
Campylobacter lari RM2100	2	2	2
Candida albicans SC5314	270	211	199
Candida dubliniensis CD36	4	3	4
Candida glabrata CBS 138	19	13	18
Candidatus Pelagibacter ubique HTCC1062	1	1	1
Candidatus Protochlamydia amoebophila UWE25	1	1	1
Canine distemper virus	9	9	4
Canine parvovirus	3	3	2
Canis lupus familiaris (dog)	1575	1157	828
Capra hircus (goat)	5	5	5
Carboxydothermus hydrogenoformans Z-2901	1	1	1
Carnation Italian ringspot virus	1	1	1
Cauliflower mosaic virus	3	2	3
Caulobacter crescentus CB15	79	46	60
Caulobacter crescentus NA1000	32	23	21
Cavia porcellus (Domestic guinea pig)	42	35	39
Cellvibrio japonicus Ueda107	2	2	2
Cercopithecine herpesvirus 9 (Simian varicella virus)	3	2	3
Cereal yellow dwarf virus - RPS	1	1	1
Cereal yellow dwarf virus - RPV	1	1	1
Chicken anemia virus	17	17	1
Chikungunya virus	9	9	2
Chilli leaf curl betasatellite	1	1	1
Chlamydia muridarum Nigg	2	2	2
Chlamydia trachomatis 434/Bu	7	4	7
Chlamydia trachomatis A/HAR-13	3	3	2
Chlamydia trachomatis B/Jali20/OT	1	1	1
Chlamydia trachomatis B/TZ1A828/OT	3	2	3
Chlamydia trachomatis D/UW-3/CX	27	24	24
Chlamydia trachomatis L2b/UCH-1/proctitis	4	4	4
Chlamydia trachomatis L2c	1	1	1
Chlamydomonas reinhardtii	118	96	91
Chlamydophila abortus S26/3	2	2	2
Chlamydophila pneumoniae AR39	8	7	8
Chlamydophila pneumoniae CWL029	5	5	5
Chlamydophila pneumoniae TW-183	4	4	4
Chlamydophila psittaci 6BC	1	1	1
Chlorobium tepidum TLS	31	19	27
Chromobacterium violaceum ATCC 12472	5	3	5
Chromohalobacter salexigens DSM 3043	1	1	1
Ciona intestinalis	74	52	56
Citrobacter freundii	1	1	1
Citrobacter koseri ATCC BAA-895	1	1	1
Citrobacter rodentium ICC168	1	1	1
Citrus leaf blotch virus	1	1	1
Citrus tristeza virus	6	4	5
Classical swine fever virus	29	29	1
Clostridium acetobutylicum ATCC 824	33	18	28
Clostridium botulinum A str. ATCC 3502	16	15	5
Clostridium botulinum A str. Hall	1	1	1
Clostridium botulinum B str. Eklund 17B	2	2	1
Clostridium botulinum B1 str. Okra	2	2	1
Clostridium botulinum BKT015925	1	1	1
Clostridium botulinum Ba4 str. 657	1	1	1
Clostridium botulinum F str. Langeland	1	1	1
Clostridium cellulovorans 743B	1	1	1
Clostridium difficile 630	35	23	16
Clostridium difficile CD196	1	1	1
Clostridium difficile R20291	2	2	2
Clostridium kluyveri DSM 555	2	2	2
Clostridium perfringens	9	8	7
Clostridium perfringens ATCC 13124	3	3	3
Clostridium perfringens SM101	11	8	11
Clostridium perfringens str. 13	37	27	24
Clostridium phytofermentans ISDg	2	2	2
Clostridium tetani E88	4	4	3
Clostridium thermocellum ATCC 27405	12	6	10
Coccidioides immitis RS	2	2	2
Colwellia psychrerythraea 34H	2	2	2
Coprinopsis cinerea okayama7#130	4	3	4
Corynebacterium diphtheriae NCTC 13129	19	15	10
Corynebacterium glutamicum ATCC 13032	144	108	122
Corynebacterium glutamicum R	7	6	7
Corynebacterium jeikeium	1	1	1
Corynebacterium jeikeium K411	1	1	1
Corynebacterium phage BFK20	1	1	1
Cotton leaf curl Multan betasatellite	1	1	1
Cowpea chlorotic mottle virus	1	1	1
Cowpox virus	5	5	3
Coxiella burnetii RSA 493	4	3	4
Cricetulus griseus (Chinese hamster)	5	5	5
Cronobacter sakazakii ATCC BAA-894	1	1	1
Cryptococcus neoformans var. neoformans B-3501A	1	1	1
Cryptococcus neoformans var. neoformans JEC21	26	24	18
Cryptomeria japonica (Japanese cedar)	1	1	1
Cryptosporidium hominis TU502	1	1	1
Cryptosporidium parvum Iowa II	10	9	10
Cucumber mosaic virus (cucumber mosaic cucumovirus)	15	13	4
Cucumber necrosis virus	3	3	1
Cucurbit yellow stunting disorder virus	1	1	1
Culex quinquefasciatus (southern house mosquito)	16	11	15
Cupriavidus metallidurans CH34	12	11	11
Cyanidioschyzon merolae strain 10D	1	1	1
Cymbidium mosaic virus	1	1	1
Cypovirus 1	1	1	1
Danio rerio (zebrafish)	4022	2875	2154
Debaryomyces hansenii CBS767	2	2	2
Dechloromonas aromatica RCB	1	1	1
Dehalococcoides sp. CBDB1	1	1	1
Deinococcus deserti VCD115	3	1	2
Deinococcus geothermalis DSM 11300	6	6	5
Deinococcus radiodurans R1	60	52	47
Deltapapillomavirus 4	31	26	6
Dendrolimus punctatus tetravirus	1	1	1
Dengue virus 1	10	10	1
Dengue virus 2	41	41	1
Dengue virus 3	4	4	1
Dengue virus 4	4	4	1
Desulfitobacterium hafniense DCB-2	2	2	2
Desulfitobacterium hafniense Y51	1	1	1
Desulfovibrio alaskensis G20	4	4	4
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774	1	1	1
Desulfovibrio vulgaris DP4	1	1	1
Desulfovibrio vulgaris str. Hildenborough	23	15	22
Dichelobacter nodosus VCS1703A	6	4	6
Dickeya dadantii 3937	3	3	3
Dictyostelium discoideum AX4	77	57	72
Drosophila ananassae	2	2	2
Drosophila erecta	2	2	2
Drosophila grimshawi	2	2	2
Drosophila melanogaster (fruit fly)	10540	7191	2856
Drosophila mojavensis	4	4	3
Drosophila persimilis	1	1	1
Drosophila pseudoobscura pseudoobscura	3	3	3
Drosophila sechellia	1	1	1
Drosophila simulans	4	4	3
Drosophila virilis	16	15	16
Drosophila willistoni	1	1	1
Drosophila yakuba	2	2	2
Duck hepatitis B virus	2	2	2
East African cassava mosaic Cameroon virus	1	1	1
East African cassava mosaic Zanzibar virus	1	1	1
Eastern equine encephalitis virus	1	1	1
Ebola virus - Mayinga, Zaire, 1976	37	34	6
Ectocarpus siliculosus virus 1	1	1	1
Ectromelia virus	3	2	3
Edwardsiella ictaluri 93-146	2	1	2
Edwardsiella tarda EIB202	5	4	5
Ehrlichia ruminantium str. Welgevonden	2	2	2
Emiliania huxleyi virus 86	1	1	1
Encephalitozoon cuniculi GB-M1	8	8	7
Encephalomyocarditis virus	4	4	1
Entamoeba histolytica HM-1:IMSS	29	24	26
Enterobacter cloacae	1	1	1
Enterobacter cloacae SCF1	1	1	1
Enterobacter cloacae subsp. cloacae ATCC 13047	2	2	2
Enterobacteria phage 933W	4	4	3
Enterobacteria phage HK97	2	2	1
Enterobacteria phage M13	3	3	2
Enterobacteria phage MS2	2	2	1
Enterobacteria phage Mu	4	3	3
Enterobacteria phage N15	4	4	4
Enterobacteria phage N4	3	3	3
Enterobacteria phage P1	6	5	4
Enterobacteria phage P2	2	2	2
Enterobacteria phage P22	16	13	6
Enterobacteria phage P4	3	2	3
Enterobacteria phage Qbeta	4	4	2
Enterobacteria phage RB69	11	11	1
Enterobacteria phage T3	1	1	1
Enterobacteria phage T4	89	72	43
Enterobacteria phage T5	2	2	2
Enterobacteria phage T7	33	29	11
Enterobacteria phage lambda	23	20	14
Enterobacteria phage phiP27	1	1	1
Enterobacteria phage phiX174 sensu lato	1	1	1
Enterococcus faecalis	12	11	7
Enterococcus faecalis V583	36	26	32
Enterococcus faecium	3	3	3
Enzootic nasal tumour virus of goats	1	1	1
Epiphyas postvittana NPV	1	1	1
Equid herpesvirus 1 (Equine herpesvirus 1)	9	9	7
Equid herpesvirus 4 (Equine herpesvirus 4)	4	4	4
Equine arteritis virus	3	3	1
Equine infectious anemia virus	4	4	2
Equus asinus (ass)	2	2	2
Equus caballus (horse)	284	208	183
Erwinia amylovora ATCC 49946	4	3	4
Erwinia amylovora CFBP1430	1	1	1
Erythrobacter litoralis HTCC2594	1	1	1
Escherichia coli	100	91	73
Escherichia coli 'BL21-Gold(DE3)pLysS AG'	7	7	7
Escherichia coli 536	1	1	1
Escherichia coli APEC O1	14	13	14
Escherichia coli ATCC 8739	1	1	1
Escherichia coli B str. REL606	2	1	2
Escherichia coli BL21	7	4	7
Escherichia coli BL21(DE3)	3	3	3
Escherichia coli BW2952	8	8	8
Escherichia coli CFT073	94	86	82
Escherichia coli E24377A	7	7	7
Escherichia coli ED1a	1	1	1
Escherichia coli HS	9	8	9
Escherichia coli IAI39	1	1	1
Escherichia coli LF82	1	1	1
Escherichia coli O103:H2 str. 12009	5	4	4
Escherichia coli O111:H- str. 11128	2	2	2
Escherichia coli O127:H6 str. E2348/69	28	20	24
Escherichia coli O157:H7 str. EC4115	3	2	3
Escherichia coli O157:H7 str. EDL933	68	61	52
Escherichia coli O157:H7 str. Sakai	52	40	39
Escherichia coli O157:H7 str. TW14359	9	7	9
Escherichia coli O25b:H4-ST131 str. EC958	1	1	1
Escherichia coli O26:H11 str. 11368	4	2	3
Escherichia coli S88	1	1	1
Escherichia coli SMS-3-5	2	2	2
Escherichia coli UTI89	24	23	19
Escherichia coli str. K-12 substr. DH10B	195	168	153
Escherichia coli str. K-12 substr. MG1655	5519	4172	1736
Escherichia coli str. K-12 substr. W3110	2	2	2
Exiguobacterium sibiricum 255-15	1	1	1
Feline calicivirus	2	2	1
Feline coronavirus	2	2	2
Feline foamy virus	3	3	2
Feline immunodeficiency virus	9	9	3
Feline infectious peritonitis virus (FIPV)	1	1	1
Feline leukemia virus	3	3	1
Felis catus (domestic cat)	130	105	95
Fibrobacter succinogenes subsp. succinogenes S85	1	1	1
Finegoldia magna ATCC 29328	1	1	1
Flavobacterium johnsoniae UW101	2	2	2
Flock house virus	1	1	1
Foot-and-mouth disease virus - type A	6	6	1
Foot-and-mouth disease virus - type Asia 1	2	2	1
Foot-and-mouth disease virus - type C	4	4	1
Foot-and-mouth disease virus - type O	3	3	1
Fowlpox virus	2	2	1
Francisella novicida U112	17	11	16
Francisella tularensis subsp. holarctica LVS	12	9	11
Francisella tularensis subsp. holarctica OSU18	2	2	2
Francisella tularensis subsp. mediasiatica FSC147	4	4	4
Francisella tularensis subsp. tularensis FSC198	1	1	1
Francisella tularensis subsp. tularensis SCHU S4	16	14	14
Frankia sp. CcI3	2	1	2
Friend murine leukemia virus	4	4	3
Fusobacterium nucleatum subsp. nucleatum ATCC 25586	4	3	4
GB virus C	2	2	1
Gallid herpesvirus 1	9	7	8
Gallid herpesvirus 2 (Marek disease virus type 1)	27	23	16
Gallid herpesvirus 3 (Marek's disease virus type 2)	3	2	3
Gallus gallus (chicken)	2933	2157	1442
Garlic latent virus	1	1	1
Gasterosteus aculeatus (three-spined stickleback)	1	1	1
Geobacillus kaustophilus HTA426	8	8	8
Geobacillus thermodenitrificans NG80-2	2	1	2
Geobacillus virus E2	1	1	1
Geobacter bemidjiensis Bem	1	1	1
Geobacter sulfurreducens PCA	9	6	9
Geobacter uraniireducens Rf4	1	1	1
Giardia lamblia ATCC 50803	24	22	21
Gibberella zeae PH-1	6	5	6
Gibbon ape leukemia virus (GALV)	1	1	1
Gloeobacter violaceus PCC 7421	3	3	3
Gluconacetobacter diazotrophicus PAl 5	1	1	1
Gluconobacter oxydans 621H	7	5	7
Glycine max (soybean)	120	100	103
Grapevine fanleaf virus	1	1	1
Grapevine virus A	1	1	1
Grapevine virus B	1	1	1
H-1 parvovirus	1	1	1
Haemophilus ducreyi 35000HP	26	16	17
Haemophilus influenzae 86-028NP	22	22	18
Haemophilus influenzae F3031	1	1	1
Haemophilus influenzae PittEE	1	1	1
Haemophilus influenzae PittGG	1	1	1
Haemophilus influenzae Rd KW20	46	39	41
Haemophilus parasuis SH0165	1	1	1
Haloarcula marismortui ATCC 43049	3	2	3
Halobacterium salinarum R1	20	17	9
Halobacterium sp. NRC-1	18	14	14
Haloferax volcanii DS2	3	3	3
Halomonas elongata DSM 2581	1	1	1
Halorubrum pleomorphic virus 1	2	1	2
Halothermothrix orenii H 168	2	2	2
Halothiobacillus neapolitanus c2	1	1	1
Hantaan virus	8	7	2
Hantavirus Z10	1	1	1
Helicobacter hepaticus ATCC 51449	6	6	6
Helicobacter mustelae 12198	1	1	1
Helicobacter pylori 26695	158	128	116
Helicobacter pylori 51	1	1	1
Helicobacter pylori B38	4	3	4
Helicobacter pylori B8	5	4	5
Helicobacter pylori G27	27	22	20
Helicobacter pylori HPAG1	9	9	8
Helicobacter pylori J99	129	109	35
Helicobacter pylori P12	3	2	3
Helicobacter pylori Shi470	1	1	1
Helicoverpa armigera NPV	2	2	2
Helicoverpa armigera NPV NNg1	1	1	1
Helicoverpa armigera nucleopolyhedrovirus G4	3	3	3
Hendra virus	11	10	2
Hepatitis A virus	4	4	2
Hepatitis B virus	309	300	4
Hepatitis C virus	315	315	2
Hepatitis C virus genotype 3	3	3	1
Hepatitis C virus genotype 4	1	1	1
Hepatitis E virus	10	10	4
Hepatitis GB virus B	4	4	1
Hepatitis delta virus	10	10	1
Herbaspirillum seropedicae SmR1	6	4	6
Hibiscus chlorotic ringspot virus	1	1	1
Homo sapiens (human)	447703	251968	16139
Homo sapiens neanderthalensis (Neandertal)	186	82	30
Hordeum vulgare (barley)	43	40	39
Hordeum vulgare subsp. vulgare (domesticated barley)	1	1	1
Human T-lymphotropic virus 1	117	116	4
Human T-lymphotropic virus 2	9	9	2
Human adenovirus A	2	2	2
Human adenovirus B	2	2	2
Human adenovirus C	27	26	10
Human adenovirus D	2	2	2
Human adenovirus E	15	14	6
Human astrovirus	2	2	2
Human coronavirus 229E	4	4	3
Human coronavirus HKU1	1	1	1
Human coronavirus NL63	5	5	3
Human coronavirus OC43	5	5	2
Human enterovirus A	7	7	1
Human enterovirus B	2	2	1
Human enterovirus C	21	21	1
Human herpesvirus 1 (Herpes simplex virus type 1)	402	304	64
Human herpesvirus 2 (Herpes simplex virus type 2)	33	27	16
Human herpesvirus 3 (Varicella-zoster virus)	46	40	25
Human herpesvirus 4 (Epstein-Barr virus)	330	311	37
Human herpesvirus 4 type 2 (Epstein-Barr virus type 2)	12	10	11
Human herpesvirus 5 (Human cytomegalovirus)	225	179	98
Human herpesvirus 6	13	10	9
Human herpesvirus 7	4	3	3
Human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus)	125	112	32
Human herpesvirus 8 type M	57	52	22
Human immunodeficiency virus 1 (HIV-1)	1206	1161	9
Human immunodeficiency virus 2	26	25	6
Human metapneumovirus	21	18	7
Human papillomavirus	12	10	4
Human papillomavirus type 10	1	1	1
Human papillomavirus type 16	299	252	8
Human papillomavirus type 26	1	1	1
Human papillomavirus type 5	4	4	3
Human papillomavirus type 53	1	1	1
Human papillomavirus type 6b	1	1	1
Human papillomavirus type 90	2	2	2
Human parainfluenza virus 1	4	4	2
Human parainfluenza virus 2	7	7	2
Human parainfluenza virus 3	11	10	4
Human parvovirus B19	10	9	2
Human respiratory syncytial virus	26	24	10
Human rhinovirus 14	1	1	1
Human rhinovirus A	2	2	1
Human rhinovirus C	1	1	1
Human spumaretrovirus	2	2	2
Hydra magnipapillata	1	1	1
Hydrogenobacter thermophilus TK-6	1	1	1
Hyphantria cunea nucleopolyhedrovirus	4	3	3
Ictalurus punctatus (channel catfish)	5	4	5
IncP-1beta multiresistance plasmid pB8	1	1	1
Infectious bronchitis virus	21	19	5
Infectious bursal disease virus (Gumboro virus)	12	12	3
Infectious hematopoietic necrosis virus	1	1	1
Infectious pancreatic necrosis virus	3	2	2
Infectious salmon anemia virus	1	1	1
Infectious spleen and kidney necrosis virus	1	1	1
Influenza A virus (A/Goose/Guangdong/1/96(H5N1))	52	42	11
Influenza A virus (A/Hong Kong/1073/99(H9N2))	8	7	4
Influenza A virus (A/Korea/426/1968(H2N2))	7	7	4
Influenza A virus (A/New York/392/2004(H3N2))	19	16	7
Influenza A virus (A/Puerto Rico/8/1934(H1N1))	85	75	11
Influenza B virus	16	16	5
Influenza C virus (C/Ann Arbor/1/50)	7	7	6
Ixodes scapularis (black-legged tick)	6	5	6
JC polyomavirus	16	16	4
Jaagsiekte sheep retrovirus	9	9	2
Jannaschia sp. CCS1	1	1	1
Japanese encephalitis virus	17	17	1
Jatropha curcas	1	1	1
Jembrana disease virus	1	1	1
Junin virus	6	6	2
Kappapapillomavirus 2	2	2	2
Klebsiella oxytoca KCTC 1686	2	1	2
Klebsiella pneumoniae	19	16	11
Klebsiella pneumoniae 342	9	9	9
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	6	6	6
Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044	16	13	15
Kluyveromyces lactis NRRL Y-1140	18	16	17
Komagataella pastoris GS115	4	3	4
La Crosse virus	2	2	1
Laccaria bicolor S238N-H82	1	1	1
Lactobacillus acidophilus NCFM	6	5	5
Lactobacillus brevis ATCC 367	1	1	1
Lactobacillus casei ATCC 334	1	1	1
Lactobacillus casei BL23	5	5	5
Lactobacillus gasseri	1	1	1
Lactobacillus gasseri ATCC 33323	2	2	2
Lactobacillus johnsonii NCC 533	1	1	1
Lactobacillus plantarum	1	1	1
Lactobacillus plantarum WCFS1	22	18	19
Lactobacillus reuteri DSM 20016	4	3	4
Lactobacillus reuteri JCM 1112	2	2	1
Lactobacillus reuteri SD2112	2	1	2
Lactobacillus rhamnosus GG	5	4	5
Lactobacillus salivarius UCC118	2	2	2
Lactococcus lactis	5	5	4
Lactococcus lactis subsp. cremoris	1	1	1
Lactococcus lactis subsp. cremoris MG1363	14	13	12
Lactococcus lactis subsp. lactis	2	1	2
Lactococcus lactis subsp. lactis Il1403	42	34	33
Lactococcus lactis subsp. lactis bv. diacetylactis	1	1	1
Lactococcus phage TP901-1	1	1	1
Lactococcus phage bIL170	1	1	1
Lake Victoria marburgvirus	3	3	3
Laribacter hongkongensis	2	1	2
Lassa virus	6	6	4
Legionella pneumophila str. Corby	5	4	5
Legionella pneumophila str. Lens	6	6	6
Legionella pneumophila str. Paris	7	4	7
Legionella pneumophila subsp. pneumophila str. Philadelphia 1	30	24	28
Leishmania braziliensis MHOM/BR/75/M2904	3	1	3
Leishmania infantum JPCM5	8	8	6
Leishmania major strain Friedlin	29	25	26
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130	16	13	12
Leptospira interrogans serovar Lai str. 56601	9	9	9
Lettuce mosaic virus	2	2	1
Lily symptomless virus (LSV)	1	1	1
Listeria innocua Clip11262	4	3	3
Listeria monocytogenes 08-5578	1	1	1
Listeria monocytogenes 10403S	3	2	2
Listeria monocytogenes EGD-e	115	94	71
Listeria monocytogenes serotype 4b str. CLIP 80459	4	3	4
Listeria monocytogenes serotype 4b str. F2365	18	16	12
Listeria phage P35	1	1	1
Lotus japonicus	17	15	15
Lymantria dispar MNPV	3	2	3
Lymphocystis disease virus - isolate China	1	1	1
Lymphocytic choriomeningitis virus	14	12	4
Macaca fascicularis (crab-eating macaque)	1	1	1
Macaca mulatta (Rhesus monkey)	316	241	220
Macacine herpesvirus 1 (monkey B virus)	1	1	1
Macacine herpesvirus 3 (Rhesus cytomegalovirus)	2	2	2
Macacine herpesvirus 4 (Rhesus lymphocryptovirus)	1	1	1
Macacine herpesvirus 5 (Rhesus rhadinovirus)	1	1	1
Machupo virus	2	2	2
Magnaporthe oryzae 70-15	11	10	11
Magnetococcus marinus MC-1	1	1	1
Magnetospirillum magneticum AMB-1	5	5	5
Mal de Rio Cuarto virus	1	1	1
Malassezia globosa CBS 7966	2	2	2
Mammalian orthoreovirus 1	2	2	1
Mannheimia haemolytica PHL213	2	2	1
Marinobacter aquaeolei VT8	2	2	1
Mason-Pfizer monkey virus	4	4	2
Measles virus	52	46	5
Meleagris gallopavo (turkey)	25	20	17
Melon necrotic spot virus	10	5	5
Merkel cell polyomavirus	2	2	2
Mesorhizobium loti MAFF303099	11	10	11
Metallosphaera sedula DSM 5348	17	1	17
Methanocaldococcus jannaschii DSM 2661	50	49	47
Methanococcoides burtonii DSM 6242	2	2	2
Methanococcus aeolicus Nankai-3	1	1	1
Methanococcus maripaludis C7	1	1	1
Methanococcus maripaludis S2	17	13	13
Methanoculleus marisnigri JR1	1	1	1
Methanopyrus kandleri AV19	1	1	1
Methanosarcina acetivorans C2A	14	11	13
Methanosarcina barkeri str. Fusaro	6	4	6
Methanosarcina mazei Go1	13	12	12
Methanothermobacter thermautotrophicus str. Delta H	19	17	17
Methylobacterium extorquens AM1	2	2	1
Methylobacterium radiotolerans JCM 2831	3	1	3
Methylococcus capsulatus str. Bath	5	5	5
Microcystis aeruginosa NIES-843	1	1	1
Microplitis demolitor bracovirus	3	3	2
Minute virus of mice	6	6	2
Mokola virus	3	3	2
Molluscum contagiosum virus subtype 1	4	3	2
Moloney murine leukemia virus	11	11	3
Monodelphis domestica (gray short-tailed opossum)	20	7	17
Moorella thermoacetica ATCC 39073	1	1	1
Mopeia virus AN20410	4	2	2
Moraxella catarrhalis	2	1	2
Moraxella catarrhalis RH4	5	3	5
Mouse mammary tumor virus	3	3	2
Mumps virus	21	17	7
Mungbean yellow mosaic India virus	2	2	2
Mupapillomavirus 1	4	4	2
Murid herpesvirus 1 (Murine cytomegalovirus)	4	4	4
Murid herpesvirus 4 (Murine herpesvirus 68)	45	33	20
Murine hepatitis virus strain A59	28	26	8
Murine hepatitis virus strain JHM	3	3	2
Murine norovirus 1	5	5	2
Murine polyomavirus	7	6	4
Murine type C retrovirus	1	1	1
Murray Valley encephalitis virus	2	2	1
Mus musculus (house mouse)	135813	95533	10824
Mus musculus domesticus (western European house mouse)	2	2	2
Mus musculus molossinus (Japanese wild mouse)	2	2	2
Mus musculus musculus (eastern European house mouse)	36	34	4
Mycobacterium avium 104	6	5	6
Mycobacterium avium subsp. paratuberculosis K-10	9	7	9
Mycobacterium bovis AF2122/97	14	13	14
Mycobacterium bovis BCG str. Pasteur 1173P2	7	6	7
Mycobacterium leprae TN	11	10	10
Mycobacterium marinum M	5	5	5
Mycobacterium phage Bethlehem	1	1	1
Mycobacterium phage Bxb1	2	2	1
Mycobacterium phage L5	5	2	5
Mycobacterium phage TM4	2	2	2
Mycobacterium smegmatis str. MC2 155	58	51	53
Mycobacterium sp. JDM601	1	1	1
Mycobacterium tuberculosis CDC1551	13	13	12
Mycobacterium tuberculosis F11	3	3	3
Mycobacterium tuberculosis H37Ra	17	16	16
Mycobacterium tuberculosis H37Rv	1014	842	531
Mycobacterium tuberculosis KZN 1435	1	1	1
Mycobacterium ulcerans Agy99	2	2	2
Mycoplasma agalactiae PG2	7	2	7
Mycoplasma arthritidis 158L3-1	1	1	1
Mycoplasma bovis PG45	1	1	1
Mycoplasma gallisepticum str. R(low)	2	2	2
Mycoplasma genitalium G37	21	19	17
Mycoplasma hyopneumoniae 232	4	4	4
Mycoplasma hyopneumoniae J	1	1	1
Mycoplasma mobile 163K	5	4	2
Mycoplasma mycoides subsp. mycoides SC str. PG1	1	1	1
Mycoplasma penetrans HF-2	1	1	1
Mycoplasma pneumoniae M129	32	26	25
Mycoplasma synoviae 53	2	2	2
Mytilus galloprovincialis (Mediterranean mussel)	1	1	1
Myxococcus xanthus DK 1622	47	33	32
Myxoma virus	8	8	8
Nanoarchaeum equitans Kin4-M	1	1	1
Nasonia vitripennis (jewel wasp)	11	6	11
Natrialba phage PhiCh1	1	1	1
Natronomonas pharaonis DSM 2160	10	10	4
Necator americanus	1	1	1
Nectria haematococca mpVI 77-13-4	1	1	1
Neisseria gonorrhoeae FA 1090	55	35	48
Neisseria gonorrhoeae NCCP11945	8	5	7
Neisseria meningitidis 053442	4	4	4
Neisseria meningitidis FAM18	6	4	6
Neisseria meningitidis MC58	63	51	51
Neisseria meningitidis Z2491	15	13	12
Nematostella vectensis (starlet sea anemone)	2	2	2
Neurospora crassa OR74A	107	86	70
Newcastle disease virus B1	29	23	6
Nicotiana tabacum (common tobacco)	8	7	7
Nipah virus	23	20	5
Nitrobacter winogradskyi Nb-255	1	1	1
Nitrosomonas europaea ATCC 19718	6	6	5
Nocardia farcinica IFM 10152	2	2	2
Nodamura virus	2	2	1
Norwalk virus	2	2	2
Nostoc punctiforme PCC 73102	5	5	5
Nostoc sp. PCC 7120	73	55	53
Novosphingobium aromaticivorans DSM 12444	1	1	1
Odontoglossum ringspot virus	2	1	2
Oenococcus oeni PSU-1	7	4	7
Oligotropha carboxidovorans OM5	3	1	3
Oncorhynchus mykiss (rainbow trout)	97	66	76
Onion yellows phytoplasma	1	1	1
Onion yellows phytoplasma OY-M	1	1	1
Oreochromis niloticus (Nile tilapia)	4	3	4
Orf virus	6	6	3
Orientia tsutsugamushi str. Ikeda	1	1	1
Ornithorhynchus anatinus (platypus)	2	2	2
Oryctolagus cuniculus (rabbit)	481	386	271
Oryza sativa Japonica Group (Japanese rice)	151	138	131
Oryzias latipes (Japanese medaka)	48	38	44
Ostreococcus lucimarinus CCE9901	1	1	1
Ourmia melon virus	1	1	1
Ovine herpesvirus 2	1	1	1
Ovis aries (sheep)	763	526	389
Pan troglodytes (chimpanzee)	46	37	43
Panicum mosaic satellite virus	1	1	1
Panine herpesvirus 2 (Chimpanzee cytomegalovirus)	1	1	1
Pantoea ananatis LMG 20103	1	1	1
Papaya mosaic virus	2	2	1
Papaya ringspot virus	3	3	1
Papio anubis (Olive baboon)	9	8	9
Paprika mild mottle virus	2	1	2
Parabacteroides distasonis ATCC 8503	10	1	10
Paracoccidioides brasiliensis Pb01	3	3	3
Paracoccus aminophilus	3	1	3
Paracoccus denitrificans PD1222	15	13	11
Parainfluenza virus 5	11	11	4
Paramecium bursaria Chlorella virus 1	4	4	4
Paramecium tetraurelia strain d4-2	6	2	6
Pasteurella multocida	1	1	1
Pasteurella multocida subsp. multocida str. Pm70	5	5	4
Pea seed-borne mosaic virus	1	1	1
Peanut stunt virus	1	1	1
Pectobacterium atrosepticum SCRI1043	13	9	11
Pectobacterium carotovorum subsp. carotovorum PC1	3	2	3
Pediculus humanus corporis (human body louse)	3	2	3
Pedobacter heparinus DSM 2366	1	1	1
Pelargonium flower break virus	3	2	2
Pelobacter carbinolicus DSM 2380	1	1	1
Pelobacter propionicus DSM 2379	1	1	1
Penicillium chrysogenum Wisconsin 54-1255	5	5	5
Penicillium marneffei ATCC 18224	2	1	2
Periplaneta fuliginosa densovirus	1	1	1
Peste-des-petits-ruminants virus	6	5	5
Photobacterium profundum SS9	1	1	1
Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949	2	1	2
Photorhabdus luminescens subsp. laumondii TTO1	4	4	4
Physcomitrella patens subsp. patens	22	17	19
Picrophilus torridus DSM 9790	4	2	4
Planktothrix phage PaV-LD	1	1	1
Plantago asiatica mosaic virus	1	1	1
Plasmid ColE1	3	3	2
Plasmid F	6	4	6
Plasmid RSF1010	1	1	1
Plasmodium berghei ANKA	22	20	20
Plasmodium chabaudi chabaudi	1	1	1
Plasmodium falciparum (malaria parasite P. falciparum)	6	6	1
Plasmodium falciparum 3D7	464	383	223
Plasmodium vivax Sal-1	14	12	12
Plasmodium yoelii yoelii 17XNL	6	5	5
Plum pox virus	2	2	1
Pneumonia virus of mice J3666	3	2	3
Podospora anserina S mat+	1	1	1
Pongo abelii (Sumatran orangutan)	2	2	2
Populus trichocarpa (black cottonwood)	3	3	3
Porcine circovirus 1	1	1	1
Porcine circovirus 2	4	4	2
Porcine epidemic diarrhea virus	7	7	3
Porcine hemagglutinating encephalomyelitis virus	1	1	1
Porcine parvovirus	2	2	2
Porcine reproductive and respiratory syndrome virus	32	27	8
Porphyromonas gingivalis ATCC 33277	38	28	19
Porphyromonas gingivalis TDC60	2	2	2
Porphyromonas gingivalis W83	42	32	37
Potato leafroll virus	3	3	3
Potato virus A	2	2	1
Potato virus X	4	4	3
Potato virus Y	6	6	1
Prochlorococcus marinus str. MIT 9312	1	1	1
Prochlorococcus marinus subsp. marinus str. CCMP1375	1	1	1
Propionibacterium acnes KPA171202	2	2	2
Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1	1	1	1
Proteus mirabilis HI4320	10	6	10
Proteus vulgaris	2	2	2
Prunus necrotic ringspot virus	1	1	1
Pseudoalteromonas haloplanktis TAC125	8	7	7
Pseudoalteromonas phage PM2	1	1	1
Pseudomonas aeruginosa	5	4	4
Pseudomonas aeruginosa LESB58	2	2	2
Pseudomonas aeruginosa PA7	8	6	8
Pseudomonas aeruginosa PAO1	637	454	367
Pseudomonas aeruginosa UCBPP-PA14	53	34	42
Pseudomonas brassicacearum subsp. brassicacearum NFM421	1	1	1
Pseudomonas fluorescens	1	1	1
Pseudomonas fluorescens Pf-5	6	5	6
Pseudomonas fluorescens Pf0-1	2	2	2
Pseudomonas fluorescens SBW25	1	1	1
Pseudomonas phage DMS3	1	1	1
Pseudomonas phage phi6	2	2	2
Pseudomonas phage phi8	1	1	1
Pseudomonas putida	5	5	5
Pseudomonas putida F1	5	5	5
Pseudomonas putida KT2440	64	46	43
Pseudomonas sp. ADP	1	1	1
Pseudomonas stutzeri A1501	3	3	3
Pseudomonas syringae pv. phaseolicola 1448A	10	6	10
Pseudomonas syringae pv. syringae	2	1	2
Pseudomonas syringae pv. syringae B728a	9	9	9
Pseudomonas syringae pv. tomato str. DC3000	43	36	31
Puumala virus	2	2	1
Pyrobaculum aerophilum str. IM2	8	6	8
Pyrobaculum calidifontis JCM 11548	1	1	1
Pyrococcus abyssi GE5	12	11	11
Pyrococcus furiosus DSM 3638	54	47	48
Pyrococcus horikoshii OT3	71	63	57
Rabbit fibroma virus	1	1	1
Rabbit hemorrhagic disease virus	4	4	1
Rabies virus	16	15	5
Ralstonia eutropha H16	26	17	20
Ralstonia solanacearum GMI1000	13	10	12
Ralstonia solanacearum MolK2	3	1	3
Raspberry bushy dwarf virus	1	1	1
Rattus exulans (Polynesian rat)	1	1	1
Rattus norvegicus (Norway rat)	50691	35455	5667
Red clover necrotic mosaic virus	2	2	1
Respiratory syncytial virus	28	26	7
Reston ebolavirus	3	3	3
Reticuloendotheliosis virus	1	1	1
Rhizobium etli CFN 42	22	14	18
Rhizobium leguminosarum bv. viciae 3841	12	8	12
Rhodobacter capsulatus SB 1003	20	12	15
Rhodobacter sphaeroides 2.4.1	63	45	33
Rhodobacter sphaeroides ATCC 17025	3	3	2
Rhodobacter sphaeroides ATCC 17029	6	6	3
Rhodococcus equi	6	4	5
Rhodococcus jostii RHA1	7	4	7
Rhodopseudomonas palustris CGA009	10	9	10
Rhodopseudomonas palustris TIE-1	2	2	2
Rhodospirillum rubrum ATCC 11170	7	5	6
Rhodothermus marinus DSM 4252	4	2	4
Rice black streaked dwarf virus	1	1	1
Rice dwarf virus	1	1	1
Rice gall dwarf virus	1	1	1
Rice stripe virus	2	2	1
Ricinus communis (castor bean)	3	3	3
Rickettsia conorii str. Malish 7	3	2	3
Rickettsia prowazekii str. Madrid E	6	6	6
Rickettsia typhi str. Wilmington	3	2	3
Rift Valley fever virus	7	7	3
Rinderpest virus (strain Kabete O)	3	3	2
Roseobacter denitrificans OCh 114	2	2	2
Ross River virus	1	1	1
Rotavirus A	12	12	6
Rotavirus C	3	3	3
Rotavirus G3	3	2	3
Rous sarcoma virus	15	15	2
Rubella virus	8	7	2
Ruegeria pomeroyi DSS-3	4	4	3
Ryegrass mottle virus	1	1	1
SARS coronavirus	170	155	11
SARS coronavirus Rs_672/2006	5	5	4
Saccharomyces cerevisiae (baker's yeast)	2	2	2
Saccharomyces cerevisiae S288c	9289	5987	2694
Saccharophagus degradans 2-40	1	1	1
Saccharopolyspora erythraea NRRL 2338	5	3	4
Saimiriine herpesvirus 2 (Herpesvirus saimiri)	2	2	2
Salinibacter ruber DSM 13855	1	1	1
Salmo salar (Atlantic salmon)	37	29	33
Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980	1	1	1
Salmonella enterica subsp. enterica serovar Bovismorbificans	1	1	1
Salmonella enterica subsp. enterica serovar Choleraesuis	1	1	1
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67	5	5	5
Salmonella enterica subsp. enterica serovar Dublin	1	1	1
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109	6	5	6
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91	3	3	2
Salmonella enterica subsp. enterica serovar Newport str. SL254	2	2	1
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150	6	6	5
Salmonella enterica subsp. enterica serovar Typhi str. CT18	45	31	39
Salmonella enterica subsp. enterica serovar Typhi str. Ty2	21	15	17
Salmonella enterica subsp. enterica serovar Typhimurium	5	5	5
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S	4	3	4
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	582	410	316
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	1	1	1
Sapovirus Mc10	3	3	1
Scheffersomyces stipitis CBS 6054	13	9	10
Schistosoma japonicum	1	1	1
Schistosoma mansoni	16	16	15
Schizosaccharomyces pombe (fission yeast)	5	5	3
Schizosaccharomyces pombe 972h-	1244	828	630
Sclerotinia sclerotiorum 1980 UF-70	2	2	2
Semliki forest virus	22	22	2
Sendai virus	20	20	7
Sepik virus	2	2	1
Serratia marcescens	1	1	1
Sesbania mosaic virus	6	5	3
Shallot yellow stripe virus	1	1	1
Sheeppox virus	1	1	1
Sheldgoose hepatitis B virus	1	1	1
Shewanella amazonensis SB2B	1	1	1
Shewanella baltica OS155	1	1	1
Shewanella frigidimarina NCIMB 400	1	1	1
Shewanella loihica PV-4	1	1	1
Shewanella oneidensis MR-1	50	37	34
Shewanella sp. ANA-3	9	3	9
Shigella dysenteriae Sd197	1	1	1
Shigella flexneri 2a str. 2457T	12	11	11
Shigella flexneri 2a str. 301	21	18	17
Shigella flexneri 5 str. 8401	3	2	3
Shigella flexneri 5a str. M90T	37	34	17
Shigella sonnei Ss046	3	2	3
Shrimp white spot syndrome virus	10	7	7
Simian foamy virus	3	3	1
Simian immunodeficiency virus	46	45	7
Simian immunodeficiency virus SIV-mnd 2	8	7	4
Simian virus 40	44	42	6
Simian-Human immunodeficiency virus	1	1	1
Sin Nombre virus	2	2	1
Sindbis virus	19	19	3
Singapore grouper iridovirus	2	2	2
Sinorhizobium fredii NGR234	9	7	7
Sinorhizobium meliloti	1	1	1
Sinorhizobium meliloti 1021	100	67	77
Solanum lycopersicum (tomato)	165	136	128
Sonchus yellow net virus	1	1	1
Sorangium cellulosum 'So ce 56'	1	1	1
Sorghum bicolor (sorghum)	2	2	2
Southern bean mosaic virus	1	1	1
Southern rice black-streaked dwarf virus	1	1	1
Soybean mosaic virus	3	3	1
Sphingomonas sp. KA1	1	1	1
Spinach curly top virus	1	1	1
Spinacia oleracea (spinach)	2	1	2
Spiroplasma citri	1	1	1
Spodoptera frugiperda MNPV	1	1	1
Spodoptera frugiperda ascovirus 1a	1	1	1
Spodoptera litura NPV	5	5	2
Spodoptera litura nucleopolyhedrovirus II	1	1	1
St. Louis encephalitis virus	1	1	1
Staphylococcus aureus	19	17	14
Staphylococcus aureus RF122	16	13	7
Staphylococcus aureus subsp. aureus COL	45	36	31
Staphylococcus aureus subsp. aureus ED98	4	4	4
Staphylococcus aureus subsp. aureus JH1	1	1	1
Staphylococcus aureus subsp. aureus MRSA252	52	51	36
Staphylococcus aureus subsp. aureus MSSA476	4	4	4
Staphylococcus aureus subsp. aureus MW2	23	17	18
Staphylococcus aureus subsp. aureus Mu3	9	6	5
Staphylococcus aureus subsp. aureus Mu50	33	25	24
Staphylococcus aureus subsp. aureus N315	37	33	33
Staphylococcus aureus subsp. aureus NCTC 8325	49	40	38
Staphylococcus aureus subsp. aureus ST398	3	3	2
Staphylococcus aureus subsp. aureus USA300_FPR3757	20	18	12
Staphylococcus aureus subsp. aureus USA300_TCH1516	13	12	12
Staphylococcus aureus subsp. aureus str. Newman	53	37	34
Staphylococcus carnosus subsp. carnosus TM300	1	1	1
Staphylococcus epidermidis ATCC 12228	4	3	4
Staphylococcus epidermidis RP62A	16	15	12
Staphylococcus haemolyticus JCSC1435	2	1	2
Staphylococcus phage 11	1	1	1
Staphylococcus saprophyticus subsp. saprophyticus	1	1	1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	1	1	1
Staphylococcus saprophyticus subsp. saprophyticus MS1146	1	1	1
Staphylococcus sciuri	1	1	1
Staphylococcus warneri	1	1	1
Stenotrophomonas maltophilia K279a	5	4	5
Streptococcus agalactiae 2603V/R	8	5	6
Streptococcus agalactiae A909	8	7	6
Streptococcus agalactiae NEM316	13	8	12
Streptococcus dysgalactiae subsp. equisimilis	1	1	1
Streptococcus equi subsp. zooepidemicus MGCS10565	1	1	1
Streptococcus gordonii str. Challis substr. CH1	13	10	12
Streptococcus mutans NN2025	2	2	2
Streptococcus mutans UA159	114	87	82
Streptococcus phage Cp-1	1	1	1
Streptococcus pneumoniae ATCC 700669	5	4	4
Streptococcus pneumoniae CGSP14	3	1	3
Streptococcus pneumoniae D39	71	58	47
Streptococcus pneumoniae G54	1	1	1
Streptococcus pneumoniae R6	79	64	56
Streptococcus pneumoniae TCH8431/19A	1	1	1
Streptococcus pneumoniae TIGR4	19	19	14
Streptococcus pyogenes	2	2	2
Streptococcus pyogenes M1 GAS	50	40	29
Streptococcus pyogenes MGAS10270	1	1	1
Streptococcus pyogenes MGAS10394	5	5	5
Streptococcus pyogenes MGAS10750	1	1	1
Streptococcus pyogenes MGAS2096	1	1	1
Streptococcus pyogenes MGAS315	8	7	8
Streptococcus pyogenes MGAS5005	16	11	12
Streptococcus pyogenes MGAS6180	1	1	1
Streptococcus pyogenes MGAS8232	6	5	5
Streptococcus pyogenes MGAS9429	4	4	4
Streptococcus pyogenes NZ131	7	6	7
Streptococcus pyogenes str. Manfredo	3	3	3
Streptococcus sanguinis SK36	4	2	4
Streptococcus suis 05ZYH33	6	6	6
Streptococcus suis 98HAH33	2	2	2
Streptococcus suis BM407	3	3	3
Streptococcus suis P1/7	5	4	4
Streptococcus thermophilus CNRZ1066	3	2	3
Streptococcus thermophilus LMD-9	2	2	2
Streptococcus thermophilus LMG 18311	5	4	4
Streptomyces avermitilis MA-4680	7	5	7
Streptomyces clavuligerus ATCC 27064	3	3	3
Streptomyces coelicolor A3(2)	163	125	132
Streptomyces griseus subsp. griseus NBRC 13350	6	6	6
Streptomyces phage phiBT1	1	1	1
Streptomyces phage phiC31	4	3	2
Streptomyces venezuelae	1	1	1
Strongylocentrotus purpuratus (purple sea urchin)	61	50	55
Sudan ebolavirus	1	1	1
Sugarcane mosaic virus	2	2	1
Suid herpesvirus 1 (Pseudorabies virus)	34	28	23
Sulfolobus acidocaldarius DSM 639	7	5	6
Sulfolobus islandicus	5	3	3
Sulfolobus islandicus filamentous virus	1	1	1
Sulfolobus islandicus rod-shaped virus 2	2	1	2
Sulfolobus solfataricus P2	96	84	64
Sulfolobus tokodaii str. 7	21	19	20
Sulfolobus turreted icosahedral virus	1	1	1
Sulfolobus virus Ragged Hills	1	1	1
Sus scrofa (pig)	2444	1796	1209
Sus scrofa domesticus (domestic pig)	2	1	2
Symbiobacterium thermophilum IAM 14863	3	1	3
Synechococcus elongatus PCC 6301	19	18	13
Synechococcus elongatus PCC 7942	17	14	11
Synechococcus phage Syn5	1	1	1
Synechococcus sp. CC9311	1	1	1
Synechococcus sp. CC9902	1	1	1
Synechococcus sp. PCC 7002	2	2	2
Synechococcus sp. RCC307	1	1	1
Synechococcus sp. WH 8102	9	7	6
Synechocystis sp. PCC 6803	193	156	141
Synechocystis sp. PCC 6803 substr. PCC-P	1	1	1
Tacaribe virus	5	4	3
Taeniopygia guttata (zebra finch)	26	20	20
Takifugu rubripes (torafugu)	23	19	22
Tanapox virus	1	1	1
Tannerella forsythia ATCC 43037	1	1	1
Tetrahymena thermophila	14	12	13
Theileria annulata strain Ankara	1	1	1
Theilovirus	5	5	1
Thermoanaerobacter tengcongensis MB4	21	19	19
Thermobifida fusca YX	3	2	3
Thermococcus kodakarensis KOD1	26	22	20
Thermococcus onnurineus NA1	3	3	2
Thermococcus sibiricus MM 739	3	3	2
Thermoplasma acidophilum DSM 1728	21	20	20
Thermoplasma volcanium GSS1	1	1	1
Thermosynechococcus elongatus BP-1	29	26	21
Thermotoga maritima MSB8	112	97	97
Thermotoga neapolitana DSM 4359	4	4	3
Thermotoga petrophila RKU-1	3	3	3
Thermus thermophilus HB27	45	41	39
Thermus thermophilus HB8	142	128	112
Thogoto virus	2	2	1
Tick-borne encephalitis virus	7	7	1
Tobacco etch virus	2	2	1
Tobacco mosaic virus	14	14	4
Tobacco necrosis satellite virus	1	1	1
Tobacco rattle virus	2	2	2
Tomato aspermy virus	2	2	1
Tomato bushy stunt virus	18	15	3
Tomato golden mosaic virus	2	2	2
Tomato leaf curl Kerala virus	1	1	1
Tomato leaf curl New Delhi virus	1	1	1
Tomato leaf curl virus	1	1	1
Tomato mosaic virus	1	1	1
Tomato spotted wilt virus	4	4	2
Tomato yellow leaf curl Sardinia virus	2	2	1
Tomato yellow leaf curl Vietnam virus satellite DNA beta	1	1	1
Tomato yellow leaf curl virus	1	1	1
Toxoplasma gondii ME49	30	26	25
Transmissible gastroenteritis virus	2	2	2
Treponema denticola ATCC 35405	17	11	12
Treponema pallidum subsp. pallidum SS14	2	2	2
Treponema pallidum subsp. pallidum str. Nichols	10	8	10
Tribolium castaneum (red flour beetle)	47	29	43
Trichinella spiralis	1	1	1
Trichodesmium erythraeum IMS101	2	1	2
Trichomonas vaginalis G3	9	7	9
Trichoplax adhaerens	1	1	1
Triticum aestivum (bread wheat)	129	109	97
Trypanosoma brucei brucei strain 927/4 GUTat10.1	114	95	103
Trypanosoma cruzi strain CL Brener	58	54	53
Tula virus	2	2	1
Turkey coronavirus	1	1	1
Turnip crinkle virus	3	3	2
Turnip mosaic virus	4	4	1
Turnip yellow mosaic virus	1	1	1
UR2 sarcoma virus	1	1	1
Ureaplasma parvum serovar 3 str. ATCC 700970	1	1	1
Ustilago maydis 521	13	12	12
Uukuniemi virus	1	1	1
Vaccinia virus	120	100	67
Variola virus (smallpox virus)	2	2	1
Venezuelan equine encephalitis virus	3	3	2
Vesicular stomatitis Indiana virus	26	22	5
Vibrio cholerae AM-19226	5	2	5
Vibrio cholerae M66-2	3	2	3
Vibrio cholerae MJ-1236	7	7	6
Vibrio cholerae MO10	1	1	1
Vibrio cholerae O1 biovar El Tor str. N16961	64	53	53
Vibrio cholerae O1 str. 2010EL-1786	1	1	1
Vibrio cholerae O395	54	41	44
Vibrio fischeri ES114	26	20	22
Vibrio fischeri MJ11	1	1	1
Vibrio harveyi ATCC BAA-1116	2	2	1
Vibrio parahaemolyticus RIMD 2210633	27	19	18
Vibrio phage kappa	1	1	1
Vibrio splendidus LGP32	1	1	1
Vibrio vulnificus	1	1	1
Vibrio vulnificus CMCP6	17	12	11
Vibrio vulnificus MO6-24/O	1	1	1
Vibrio vulnificus YJ016	5	4	5
Viral hemorrhagic septicemia virus Fil3	3	3	2
Visna/maedi virus	1	1	1
Vitis vinifera (wine grape)	33	25	31
Volvox carteri f. nagariensis	1	1	1
Weissella cibaria	1	1	1
West Nile virus	42	41	2
Wheat streak mosaic virus	2	2	1
Wolbachia endosymbiont of Drosophila melanogaster	1	1	1
Wolinella succinogenes DSM 1740	7	3	5
Xanthobacter autotrophicus Py2	1	1	1
Xanthomonas axonopodis pv. citri str. 306	17	15	15
Xanthomonas campestris pv. campestris str. 8004	23	15	19
Xanthomonas campestris pv. campestris str. ATCC 33913	34	23	30
Xanthomonas campestris pv. campestris str. B100	2	2	2
Xanthomonas campestris pv. vesicatoria str. 85-10	13	11	8
Xanthomonas oryzae pv. oryzae KACC 10331	13	12	13
Xanthomonas oryzae pv. oryzae MAFF 311018	3	1	3
Xanthomonas oryzae pv. oryzae PXO99A	10	8	10
Xenopus (Silurana) tropicalis (western clawed frog)	154	123	144
Xenopus laevis (African clawed frog)	1838	1328	1084
Xenorhabdus nematophila ATCC 19061	1	1	1
Xylella fastidiosa 9a5c	3	3	3
Xylella fastidiosa Temecula1	6	4	6
Yaba monkey tumor virus	1	1	1
Yaba-like disease virus	1	1	1
Yarrowia lipolytica CLIB122	10	6	10
Yellow fever virus	8	8	1
Yersinia enterocolitica	23	21	15
Yersinia enterocolitica W22703	3	3	3
Yersinia enterocolitica subsp. enterocolitica 8081	16	11	14
Yersinia pestis	4	4	2
Yersinia pestis Angola	1	1	1
Yersinia pestis CO92	27	24	21
Yersinia pestis KIM10+	43	33	33
Yersinia pestis biovar Microtus str. 91001	5	5	5
Yersinia phage PY54	1	1	1
Yersinia pseudotuberculosis IP 31758	1	1	1
Yersinia pseudotuberculosis IP 32953	22	16	19
Yersinia pseudotuberculosis PB1/+	7	5	3
Yersinia pseudotuberculosis YPIII	9	2	8
Zea mays (maize)	255	224	193
Zucchini yellow mosaic virus	4	4	1
Zygosaccharomyces rouxii CBS 732	2	1	2
Zymomonas mobilis subsp. mobilis ZM4	12	9	11
Totals	712549	415061	67923