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GeneRIF Statistics

As of December 07, 2009

Totals

473847	GeneRIFs
284280	Distinct publications
52436	Genes carrying GeneRIFs
887	Taxa with GeneRIFs

(What's being counted?)

History


GeneRIFs	Publications	Genes	Taxa

Counts by Source

Source	GeneRIFs	Distinct Publications	Genes	Taxa
Source
NLM Index Section	379710	256440	49974	866
NIAID HIV project	35	65	21	2
EcoGene	874	778	874	1
HuGENet	88402	45458	6487	3
General public	4826	3309	3632	140
Totals	473847	284280	52436	887

Counts by Organism

Organism	GeneRIFs	Distinct Publications	Genes
Organism
Abelson murine leukemia virus	2	2	1
Acanthamoeba polyphaga mimivirus	3	3	3
Acidianus filamentous virus 1	1	1	1
Acidithiobacillus ferrooxidans	1	1	1
Acidithiobacillus ferrooxidans ATCC 23270	3	3	3
Acidithiobacillus ferrooxidans ATCC 53993	1	1	1
Acinetobacter baumannii AB307-0294	1	1	1
Acinetobacter sp. ADP1	2	2	2
Actinobacillus pleuropneumoniae L20	4	4	3
Actinobacillus pleuropneumoniae serovar 3 str. JL03	4	4	4
Actinobacillus pleuropneumoniae serovar 7 str. AP76	1	1	1
Acyrthosiphon pisum (pea aphid)	2	2	2
Adeno-associated virus - 1	1	1	1
Adeno-associated virus - 2	14	7	9
Aedes aegypti (yellow fever mosquito)	17	14	17
Aeromonas hydrophila subsp. hydrophila ATCC 7966	1	1	1
Aeromonas phage Aeh1	3	2	2
Aeromonas salmonicida subsp. salmonicida	1	1	1
Aeropyrum pernix K1	17	16	15
African cassava mosaic virus	1	1	1
African horsesickness virus	2	2	2
African swine fever virus	14	14	10
Agrobacterium rhizogenes	1	1	1
Agrobacterium tumefaciens	17	14	11
Agrobacterium tumefaciens str. C58	61	48	52
Ajellomyces capsulatus NAm1	1	1	1
Alcelaphine herpesvirus 1 (wildebeest herpesvirus)	1	1	1
Alfalfa mosaic virus	1	1	1
Alkalilimnicola ehrlichii MLHE-1	2	2	2
Alkaliphilus oremlandii OhILAs	1	1	1
Anabaena variabilis ATCC 29413	1	1	1
Andes virus	2	2	1
Anopheles gambiae str. PEST	54	44	39
Anticarsia gemmatalis nucleopolyhedrovirus	1	1	1
Apis mellifera (honey bee)	57	47	44
Apis mellifera ligustica (common honey bee)	1	1	1
Apple latent spherical virus	1	1	1
Aquifex aeolicus VF5	19	17	16
Arabidopsis thaliana (thale cress)	4954	3576	2732
Archaeoglobus fulgidus DSM 4304	22	21	21
Arthrobacter nitroguajacolicus	1	1	1
Artibeus jamaicensis (Jamaican fruit-eating bat)	1	1	1
Ashbya gossypii ATCC 10895	5	5	5
Aspergillus clavatus NRRL 1	1	1	1
Aspergillus fumigatus Af293	40	37	34
Aspergillus nidulans FGSC A4	30	25	26
Aspergillus niger CBS 513.88	5	3	5
Aspergillus oryzae RIB40	7	5	7
Autographa californica nucleopolyhedrovirus	29	25	17
Avian metapneumovirus	2	2	1
Azoarcus sp. BH72	1	1	1
Azorhizobium caulinodans ORS 571	1	1	1
BK polyomavirus	4	4	2
Bacillus amyloliquefaciens FZB42	3	3	3
Bacillus anthracis (anthrax)	2	2	2
Bacillus anthracis str. 'Ames Ancestor'	53	43	27
Bacillus anthracis str. A2012	2	2	2
Bacillus anthracis str. Ames	12	8	11
Bacillus anthracis str. Sterne	6	5	6
Bacillus cereus 03BB102	3	2	3
Bacillus cereus AH820	1	1	1
Bacillus cereus ATCC 10987	4	4	3
Bacillus cereus ATCC 14579	15	15	11
Bacillus cereus E33L	9	9	7
Bacillus cytotoxicus NVH 391-98	1	1	1
Bacillus halodurans C-125	10	9	10
Bacillus licheniformis ATCC 14580	8	8	7
Bacillus phage GA-1	1	1	1
Bacillus phage PZA	7	6	6
Bacillus phage SPP1	1	1	1
Bacillus phage phi29	6	6	4
Bacillus subtilis subsp. subtilis str. 168	565	410	395
Bacillus thuringiensis	1	1	1
Bacillus thuringiensis serovar israelensis	11	9	5
Bacillus thuringiensis serovar konkukian str. 97-27	3	2	3
Bacteroides fragilis NCTC 9343	80	15	77
Bacteroides thetaiotaomicron VPI-5482	4	4	4
Bamboo mosaic virus	2	2	1
Banna virus	1	1	1
Barley stripe mosaic virus	1	1	1
Bartonella quintana str. Toulouse	3	1	3
Bat coronavirus HKU3	1	1	1
Bdellovibrio bacteriovorus HD100	1	1	1
Beet curly top virus	1	1	1
Beet necrotic yellow vein virus	3	3	2
Beet yellows virus	2	2	1
Bhendi yellow vein mosaic virus	1	1	1
Bhendi yellow vein mosaic virus satellite DNA beta	1	1	1
Bifidobacterium longum NCC2705	2	2	2
Blackcurrant reversion virus	1	1	1
Bluetongue virus	8	8	7
Bombyx mori (domestic silkworm)	115	87	95
Bombyx mori NPV	20	19	16
Bordetella bronchiseptica RB50	12	9	11
Bordetella parapertussis 12822	2	1	2
Bordetella pertussis Tohama I	21	19	9
Borna disease virus	11	11	5
Borrelia afzelii PKo	2	2	2
Borrelia burgdorferi 156a	1	1	1
Borrelia burgdorferi B31	85	60	44
Borrelia burgdorferi ZS7	2	2	2
Borrelia garinii PBi	2	2	1
Bos indicus (zebu)	2	2	2
Bos taurus (cattle)	2779	2109	1173
Bovine coronavirus	5	3	4
Bovine ephemeral fever virus	2	1	2
Bovine herpesvirus 1	20	18	10
Bovine herpesvirus 5	1	1	1
Bovine immunodeficiency virus	3	3	2
Bovine papillomavirus - 1	22	20	6
Bovine papular stomatitis virus	2	2	2
Bovine respiratory syncytial virus	1	1	1
Bovine viral diarrhea virus 1	6	6	1
Bradyrhizobium japonicum USDA 110	36	27	29
Bradyrhizobium sp. BTAi1	1	1	1
Brome mosaic virus	4	3	2
Brucella abortus bv. 1 str. 9-941	6	5	6
Brucella melitensis biovar Abortus 2308	13	7	13
Brucella melitensis bv. 1 str. 16M	4	4	4
Brucella suis 1330	11	7	10
Bunyamwera virus	3	3	1
Burkholderia cenocepacia AU 1054	2	2	2
Burkholderia cenocepacia J2315	5	2	5
Burkholderia mallei ATCC 23344	2	2	2
Burkholderia multivorans ATCC 17616	1	1	1
Burkholderia pseudomallei 406e	1	1	1
Burkholderia pseudomallei K96243	10	9	6
Burkholderia thailandensis E264	3	3	3
Burkholderia xenovorans LB400	7	6	6
Caenorhabditis elegans (nematode)	2121	1476	1170
Campylobacter coli	1	1	1
Campylobacter jejuni RM1221	2	2	2
Campylobacter jejuni subsp. jejuni 81-176	6	6	6
Campylobacter jejuni subsp. jejuni 81116	1	1	1
Campylobacter jejuni subsp. jejuni NCTC 11168	53	41	50
Campylobacter lari RM2100	2	2	2
Candida albicans SC5314	125	104	105
Candida glabrata CBS 138	12	7	11
Candidatus Pelagibacter ubique HTCC1062	1	1	1
Canine distemper virus	3	3	2
Canine parvovirus	2	2	1
Canis lupus familiaris (dog)	995	736	595
Carboxydothermus hydrogenoformans Z-2901	1	1	1
Carnation Italian ringspot virus	1	1	1
Cauliflower mosaic virus	3	2	3
Caulobacter crescentus CB15	58	33	47
Caulobacter crescentus NA1000	4	4	2
Cavia porcellus (domestic guinea pig)	4	4	4
Cellvibrio japonicus Ueda107	1	1	1
Cercopithecine herpesvirus 9 (Simian varicella virus)	3	2	3
Cereal yellow dwarf virus - RPS	1	1	1
Chicken anemia virus	14	14	1
Chikungunya virus	1	1	1
Chlamydia muridarum Nigg	2	2	2
Chlamydia trachomatis	3	2	3
Chlamydia trachomatis A/HAR-13	2	2	2
Chlamydia trachomatis D/UW-3/CX	15	13	13
Chlamydia trachomatis L2b/UCH-1/proctitis	3	3	3
Chlamydomonas reinhardtii	54	48	47
Chlamydophila abortus S26/3	1	1	1
Chlamydophila pneumoniae AR39	5	5	5
Chlamydophila pneumoniae CWL029	5	5	5
Chlamydophila pneumoniae TW-183	2	2	2
Chlorobium tepidum TLS	28	16	25
Chromobacterium violaceum ATCC 12472	3	1	3
Ciona intestinalis	47	34	40
Citrus tristeza virus	2	2	2
Classical swine fever virus	15	15	1
Clostridium acetobutylicum ATCC 824	14	10	13
Clostridium botulinum A str. ATCC 3502	4	4	2
Clostridium botulinum B1 str. Okra	1	1	1
Clostridium botulinum F str. Langeland	1	1	1
Clostridium difficile 630	11	6	6
Clostridium kluyveri DSM 555	2	2	2
Clostridium perfringens	3	3	3
Clostridium perfringens ATCC 13124	3	3	3
Clostridium perfringens SM101	8	6	8
Clostridium perfringens str. 13	25	17	16
Clostridium tetani E88	3	3	3
Clostridium thermocellum ATCC 27405	2	1	2
Colwellia psychrerythraea 34H	1	1	1
Coprinopsis cinerea okayama7#130	2	1	2
Corynebacterium diphtheriae NCTC 13129	11	9	7
Corynebacterium glutamicum ATCC 13032	86	61	81
Corynebacterium glutamicum R	5	4	5
Corynebacterium jeikeium	1	1	1
Cotton leaf curl Multan betasatellite	1	1	1
Cottontail rabbit papillomavirus	2	2	2
Cowpea chlorotic mottle virus	1	1	1
Cowpox virus	2	2	2
Cryptococcus neoformans var. neoformans B-3501A	1	1	1
Cryptococcus neoformans var. neoformans JEC21	18	16	12
Cryptomeria japonica (Japanese cedar)	1	1	1
Cryptosporidium hominis TU502	1	1	1
Cryptosporidium parvum Iowa II	7	6	7
Cucumber mosaic virus (cucumber mosaic cucumovirus)	11	9	4
Cucumber necrosis virus	1	1	1
Cucurbit yellow stunting disorder virus	1	1	1
Culex quinquefasciatus (southern house mosquito)	6	5	6
Cymbidium mosaic virus	1	1	1
Cypovirus 1	1	1	1
Danio rerio (zebrafish)	2608	1871	1541
Debaryomyces hansenii CBS767	1	1	1
Deinococcus deserti VCD115	3	1	2
Deinococcus geothermalis DSM 11300	3	3	3
Deinococcus radiodurans R1	39	35	33
Dendrolimus punctatus tetravirus	1	1	1
Dengue virus 1	5	5	1
Dengue virus 2	19	19	1
Dengue virus 3	1	1	1
Dengue virus 4	1	1	1
Desulfitobacterium hafniense Y51	1	1	1
Desulfovibrio desulfuricans subsp. desulfuricans str. G20	4	4	4
Desulfovibrio vulgaris DP4	1	1	1
Desulfovibrio vulgaris str. Hildenborough	17	12	17
Dichelobacter nodosus VCS1703A	2	1	2
Drosophila ananassae	1	1	1
Drosophila erecta	1	1	1
Drosophila grimshawi	1	1	1
Drosophila melanogaster (fruit fly)	7498	5186	2428
Drosophila mojavensis	2	2	2
Drosophila pseudoobscura pseudoobscura	2	2	2
Drosophila virilis	8	8	8
Duck hepatitis B virus	1	1	1
East African cassava mosaic Cameroon virus	1	1	1
Eastern equine encephalitis virus	1	1	1
Ectocarpus siliculosus virus 1	1	1	1
Ectromelia virus	3	2	3
Ehrlichia ruminantium str. Welgevonden	2	2	2
Emiliania huxleyi virus 86	1	1	1
Encephalitozoon cuniculi GB-M1	5	5	4
Encephalomyocarditis virus	2	2	1
Entamoeba histolytica HM-1:IMSS	15	13	13
Enterobacteria phage 933W	2	2	2
Enterobacteria phage HK97	2	2	1
Enterobacteria phage M13	2	2	2
Enterobacteria phage MS2	1	1	1
Enterobacteria phage Mu	1	1	1
Enterobacteria phage N15	4	4	4
Enterobacteria phage N4	2	2	2
Enterobacteria phage P1	6	5	4
Enterobacteria phage P2	1	1	1
Enterobacteria phage P22	8	8	5
Enterobacteria phage P4	3	2	3
Enterobacteria phage RB69	5	5	1
Enterobacteria phage T3	1	1	1
Enterobacteria phage T4	67	55	38
Enterobacteria phage T5	1	1	1
Enterobacteria phage T7	23	20	8
Enterobacteria phage lambda	15	12	10
Enterobacteria phage phiP27	1	1	1
Enterococcus faecalis	6	6	4
Enterococcus faecalis V583	25	16	23
Enterococcus faecium	1	1	1
Epiphyas postvittana NPV	1	1	1
Equid herpesvirus 1 (Equine herpesvirus 1)	3	3	2
Equine arteritis virus	3	3	1
Equine infectious anemia virus	3	3	2
Equus asinus (ass)	1	1	1
Equus caballus (horse)	145	96	111
Erythrobacter litoralis HTCC2594	1	1	1
Escherichia coli	64	57	48
Escherichia coli 536	1	1	1
Escherichia coli APEC O1	13	12	13
Escherichia coli BL21(DE3)	1	1	1
Escherichia coli BW2952	3	3	3
Escherichia coli CFT073	85	78	75
Escherichia coli E24377A	7	7	7
Escherichia coli ED1a	1	1	1
Escherichia coli HS	8	7	8
Escherichia coli LF82	1	1	1
Escherichia coli O127:H6 str. E2348/69	10	6	9
Escherichia coli O157:H7 EDL933	48	42	40
Escherichia coli O157:H7 str. EC4115	1	1	1
Escherichia coli O157:H7 str. Sakai	37	31	29
Escherichia coli S88	1	1	1
Escherichia coli SMS-3-5	2	2	2
Escherichia coli UTI89	18	17	17
Escherichia coli str. K-12 substr. DH10B	105	87	90
Escherichia coli str. K-12 substr. MG1655	4131	3189	1557
Feline coronavirus	1	1	1
Feline foamy virus	1	1	1
Feline immunodeficiency virus	8	8	2
Feline leukemia virus	2	2	1
Felis catus (domestic cat)	78	66	57
Finegoldia magna ATCC 29328	1	1	1
Flock house virus	1	1	1
Foot-and-mouth disease virus - type A	2	2	1
Foot-and-mouth disease virus - type C	1	1	1
Foot-and-mouth disease virus - type O	2	2	1
Fowlpox virus	2	2	1
Francisella novicida U112	11	8	10
Francisella tularensis subsp. holarctica	8	5	7
Francisella tularensis subsp. holarctica OSU18	1	1	1
Francisella tularensis subsp. mediasiatica FSC147	1	1	1
Francisella tularensis subsp. tularensis SCHU S4	6	6	6
Frankia sp. CcI3	2	1	2
Friend murine leukemia virus	1	1	1
GB virus C	1	1	1
Gallid herpesvirus 1	6	4	5
Gallid herpesvirus 2 (Marek disease virus type 1)	16	15	10
Gallid herpesvirus 3 (Marek's disease virus type 2)	3	2	3
Gallus gallus (chicken)	2017	1497	1114
Garlic latent virus	1	1	1
Geobacillus kaustophilus HTA426	4	4	4
Geobacillus thermodenitrificans NG80-2	2	1	2
Geobacillus virus E2	1	1	1
Geobacter sulfurreducens PCA	7	5	7
Geobacter uraniireducens Rf4	1	1	1
Giardia lamblia ATCC 50803	13	12	11
Gibberella zeae PH-1	5	4	5
Gloeobacter violaceus PCC 7421	2	2	2
Gluconobacter oxydans 621H	4	3	4
Glycine max (soybean)	71	56	61
Haemophilus ducreyi 35000HP	15	9	10
Haemophilus influenzae 86-028NP	14	14	13
Haemophilus influenzae PittEE	1	1	1
Haemophilus influenzae PittGG	1	1	1
Haemophilus influenzae Rd KW20	37	32	35
Haloarcula marismortui ATCC 43049	2	1	2
Halobacterium salinarum R1	13	10	6
Halobacterium sp. NRC-1	15	13	11
Hantaan virus	3	3	1
Helicobacter hepaticus ATCC 51449	6	6	6
Helicobacter pylori 26695	106	87	83
Helicobacter pylori B38	1	1	1
Helicobacter pylori G27	8	7	6
Helicobacter pylori HPAG1	8	8	7
Helicobacter pylori J99	92	79	26
Helicobacter pylori P12	1	1	1
Helicobacter pylori Shi470	1	1	1
Helicoverpa armigera NPV	1	1	1
Helicoverpa armigera nucleopolyhedrovirus G4	1	1	1
Hendra virus	7	6	2
Hepatitis A virus	2	2	1
Hepatitis B virus	128	127	4
Hepatitis C virus	196	196	2
Hepatitis E virus	4	4	2
Hepatitis GB virus B	3	3	1
Hepatitis delta virus	7	7	1
Homo sapiens (human)	295464	172486	13166
Homo sapiens neanderthalensis (Neandertal)	55	27	20
Hordeum vulgare (barley)	24	21	22
Human T-lymphotropic virus 1	82	81	4
Human T-lymphotropic virus 2	6	6	2
Human adenovirus C	11	11	6
Human adenovirus D	1	1	1
Human adenovirus E	13	12	5
Human astrovirus	1	1	1
Human coronavirus 229E	3	3	3
Human coronavirus HKU1	1	1	1
Human coronavirus NL63	3	3	2
Human enterovirus B	1	1	1
Human herpesvirus 1 (Herpes simplex virus type 1)	246	184	57
Human herpesvirus 2 (Herpes simplex virus type 2)	19	15	12
Human herpesvirus 3 (Varicella-zoster virus)	23	19	16
Human herpesvirus 4 (Epstein-Barr virus)	198	188	30
Human herpesvirus 4 type 2 (Epstein-Barr virus type 2)	5	5	4
Human herpesvirus 5 (Human cytomegalovirus)	98	78	55
Human herpesvirus 6A	9	9	6
Human herpesvirus 6B	3	2	2
Human herpesvirus 7	2	1	2
Human herpesvirus 8 (Kaposi's sarcoma-associated herpesvirus)	57	51	18
Human herpesvirus 8 type M	53	48	22
Human immunodeficiency virus 1 (HIV-1)	800	766	9
Human immunodeficiency virus 2	17	16	5
Human metapneumovirus	12	10	4
Human papillomavirus	9	7	3
Human papillomavirus - 1	3	3	2
Human papillomavirus - 18	46	40	7
Human papillomavirus - cand90	2	2	2
Human papillomavirus type 16	170	149	8
Human papillomavirus type 26	1	1	1
Human papillomavirus type 5	3	3	3
Human papillomavirus type 53	1	1	1
Human parainfluenza virus 1	2	2	2
Human parainfluenza virus 2	2	2	1
Human parainfluenza virus 3	7	6	4
Human parvovirus B19	7	6	2
Human respiratory syncytial virus	13	13	7
Human rhinovirus B	1	1	1
Human spumaretrovirus	2	2	2
Infectious bronchitis virus	16	14	5
Infectious bursal disease virus (Gumboro virus)	7	7	3
Infectious hematopoietic necrosis virus	1	1	1
Infectious pancreatic necrosis virus	2	1	2
Infectious spleen and kidney necrosis virus	1	1	1
Influenza A virus (A/Goose/Guangdong/1/96(H5N1))	22	19	7
Influenza A virus (A/Hong Kong/1073/99(H9N2))	6	5	4
Influenza A virus (A/Korea/426/1968(H2N2))	4	4	2
Influenza A virus (A/New York/392/2004(H3N2))	4	4	3
Influenza A virus (A/Puerto Rico/8/34(H1N1))	32	25	9
Influenza B virus	9	9	5
Influenza C virus	4	4	4
JC polyomavirus	10	10	3
Jaagsiekte sheep retrovirus	7	7	2
Japanese encephalitis virus	7	7	1
Jembrana disease virus	1	1	1
Junin virus	4	4	1
Klebsiella pneumoniae	5	5	4
Klebsiella pneumoniae 342	4	4	4
Klebsiella pneumoniae NTUH-K2044	2	2	2
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	1	1	1
Kluyveromyces lactis NRRL Y-1140	5	5	5
La Crosse virus	2	2	1
Lactobacillus acidophilus NCFM	4	3	3
Lactobacillus casei ATCC 334	1	1	1
Lactobacillus casei BL23	3	3	3
Lactobacillus gasseri	1	1	1
Lactobacillus gasseri ATCC 33323	1	1	1
Lactobacillus johnsonii NCC 533	1	1	1
Lactobacillus plantarum	1	1	1
Lactobacillus plantarum WCFS1	7	6	6
Lactobacillus reuteri DSM 20016	2	2	2
Lactobacillus reuteri JCM 1112	2	2	1
Lactobacillus salivarius UCC118	1	1	1
Lactococcus lactis	5	5	4
Lactococcus lactis subsp. cremoris	1	1	1
Lactococcus lactis subsp. cremoris MG1363	10	9	9
Lactococcus lactis subsp. lactis	2	1	2
Lactococcus lactis subsp. lactis Il1403	31	26	23
Lactococcus lactis subsp. lactis bv. diacetylactis	1	1	1
Lactococcus phage TP901-1	1	1	1
Lactococcus phage bIL170	1	1	1
Lake Victoria marburgvirus	2	2	2
Laribacter hongkongensis	2	1	2
Lassa virus	1	1	1
Legionella pneumophila str. Corby	2	1	2
Legionella pneumophila str. Lens	2	2	2
Legionella pneumophila str. Paris	1	1	1
Legionella pneumophila subsp. pneumophila str. Philadelphia 1	13	13	12
Leishmania infantum JPCM5	4	4	3
Leishmania major strain Friedlin	18	15	16
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130	11	9	9
Leptospira interrogans serovar Lai str. 56601	5	5	5
Lettuce mosaic virus	1	1	1
Listeria innocua Clip11262	2	2	1
Listeria monocytogenes Clip80459	4	3	4
Listeria monocytogenes EGD-e	60	49	37
Listeria monocytogenes str. 4b F2365	15	13	9
Lotus japonicus	14	13	12
Lymphocystis disease virus - isolate China	1	1	1
Lymphocytic choriomeningitis virus	8	7	3
Macaca fascicularis (crab-eating macaque)	1	1	1
Macaca mulatta (rhesus monkey)	150	123	124
Macacine herpesvirus 1 (monkey B virus)	1	1	1
Macacine herpesvirus 3 (Rhesus cytomegalovirus)	1	1	1
Macacine herpesvirus 4 (Rhesus lymphocryptovirus)	1	1	1
Machupo virus	1	1	1
Magnaporthe grisea 70-15	5	5	5
Magnetococcus sp. MC-1	1	1	1
Magnetospirillum magneticum AMB-1	2	2	2
Mammalian orthoreovirus 1	2	2	1
Mannheimia haemolytica PHL213	1	1	1
Mason-Pfizer monkey virus	2	2	1
Measles virus	34	28	5
Meleagris gallopavo (turkey)	11	8	9
Melon necrotic spot virus	9	4	5
Mesorhizobium loti MAFF303099	9	8	9
Metallosphaera sedula DSM 5348	17	1	17
Methanocaldococcus jannaschii DSM 2661	30	30	29
Methanococcoides burtonii DSM 6242	1	1	1
Methanococcus aeolicus Nankai-3	1	1	1
Methanococcus maripaludis S2	15	11	11
Methanosarcina acetivorans C2A	8	6	8
Methanosarcina barkeri str. Fusaro	6	4	6
Methanosarcina mazei Go1	10	9	10
Methanothermobacter thermautotrophicus str. Delta H	15	13	14
Methylococcus capsulatus str. Bath	3	3	3
Microplitis demolitor bracovirus	2	2	1
Minute virus of mice	5	5	2
Mokola virus	2	2	1
Molluscum contagiosum virus	3	2	2
Moloney murine leukemia virus	9	9	3
Monodelphis domestica (gray short-tailed opossum)	13	5	9
Moorella thermoacetica ATCC 39073	1	1	1
Moraxella catarrhalis	2	1	2
Mouse mammary tumor virus	2	2	1
Mumps virus	15	11	7
Mungbean yellow mosaic India virus	1	1	1
Murid herpesvirus 1 (Murine cytomegalovirus)	3	3	3
Murid herpesvirus 4 (Murine herpesvirus 68)	26	18	12
Murine hepatitis virus strain A59	21	20	6
Murine hepatitis virus strain JHM	2	2	1
Murine norovirus 1	1	1	1
Murine polyomavirus	3	3	3
Murine type C retrovirus	1	1	1
Murray Valley encephalitis virus	2	2	1
Mus musculus (house mouse)	91478	65023	9345
Mus musculus domesticus (western European house mouse)	2	2	2
Mus musculus molossinus (Japanese wild mouse)	2	2	2
Mus musculus musculus (eastern European house mouse)	7	6	3
Mycobacterium avium 104	4	3	4
Mycobacterium avium subsp. paratuberculosis K-10	6	4	6
Mycobacterium bovis AF2122/97	12	11	12
Mycobacterium bovis BCG str. Pasteur 1173P2	3	2	3
Mycobacterium leprae TN	6	6	5
Mycobacterium marinum M	1	1	1
Mycobacterium phage Bxb1	1	1	1
Mycobacterium phage L5	5	2	5
Mycobacterium smegmatis str. MC2 155	24	23	23
Mycobacterium tuberculosis CDC1551	6	6	6
Mycobacterium tuberculosis F11	2	2	2
Mycobacterium tuberculosis H37Ra	11	10	10
Mycobacterium tuberculosis H37Rv	626	526	359
Mycobacterium tuberculosis KZN 1435	1	1	1
Mycobacterium ulcerans Agy99	1	1	1
Mycoplasma agalactiae PG2	6	1	6
Mycoplasma arthritidis 158L3-1	1	1	1
Mycoplasma gallisepticum R	1	1	1
Mycoplasma genitalium G37	12	10	10
Mycoplasma hyopneumoniae 232	2	2	2
Mycoplasma mobile 163K	3	2	2
Mycoplasma mycoides subsp. mycoides SC str. PG1	1	1	1
Mycoplasma penetrans HF-2	1	1	1
Mycoplasma pneumoniae M129	24	18	20
Mycoplasma synoviae 53	1	1	1
Myxococcus xanthus DK 1622	20	14	15
Myxoma virus	6	6	6
Nasonia vitripennis (jewel wasp)	6	3	6
Natronomonas pharaonis DSM 2160	6	6	4
Necator americanus	1	1	1
Neisseria gonorrhoeae FA 1090	29	19	25
Neisseria gonorrhoeae NCCP11945	2	2	2
Neisseria meningitidis 053442	2	2	2
Neisseria meningitidis FAM18	1	1	1
Neisseria meningitidis MC58	39	31	34
Neisseria meningitidis Z2491	13	11	11
Nematostella vectensis (starlet sea anemone)	1	1	1
Neurospora crassa OR74A	72	60	45
Newcastle disease virus	18	14	5
Nicotiana tabacum (common tobacco)	6	5	5
Nipah virus	15	14	5
Nitrosomonas europaea ATCC 19718	3	3	3
Nocardia farcinica IFM 10152	2	2	2
Nodamura virus	1	1	1
Nostoc punctiforme PCC 73102	3	3	3
Nostoc sp. PCC 7120	47	34	38
Novosphingobium aromaticivorans DSM 12444	1	1	1
Odontoglossum ringspot virus	2	1	2
Oenococcus oeni PSU-1	2	2	2
Oncorhynchus mykiss (rainbow trout)	40	26	36
Onion yellows phytoplasma	1	1	1
Orf virus	3	3	2
Ornithorhynchus anatinus (platypus)	1	1	1
Oryctolagus cuniculus (rabbit)	144	127	104
Oryza sativa Japonica Group (Japanese rice)	90	83	82
Oryzias latipes (Japanese medaka)	25	20	24
Ovine herpesvirus 2	1	1	1
Ovis aries (sheep)	503	340	282
Pan troglodytes (chimpanzee)	31	26	30
Panicum mosaic satellite virus	1	1	1
Panine herpesvirus 2 (Chimpanzee cytomegalovirus)	1	1	1
Papaya mosaic virus	2	2	1
Papaya ringspot virus	2	2	1
Papio anubis (olive baboon)	5	4	5
Parabacteroides distasonis ATCC 8503	10	1	10
Paracoccus denitrificans PD1222	9	7	7
Parainfluenza virus 5	5	5	2
Paramecium bursaria Chlorella virus 1	4	4	4
Paramecium tetraurelia strain d4-2	6	2	6
Pasteurella multocida	1	1	1
Pasteurella multocida subsp. multocida str. Pm70	4	4	3
Pea seed-borne mosaic virus	1	1	1
Peanut stunt virus	1	1	1
Pectobacterium atrosepticum SCRI1043	10	8	8
Pectobacterium carotovorum subsp. carotovorum PC1	2	1	2
Pediculus humanus corporis (human body louse)	1	1	1
Pelobacter carbinolicus DSM 2380	1	1	1
Pelobacter propionicus DSM 2379	1	1	1
Penicillium marneffei ATCC 18224	2	1	2
Periplaneta fuliginosa densovirus	1	1	1
Peste-des-petits-ruminants virus	3	3	3
Photorhabdus luminescens subsp. laumondii TTO1	2	2	2
Physcomitrella patens subsp. patens	2	1	2
Pichia stipitis CBS 6054	12	8	9
Picrophilus torridus DSM 9790	2	1	2
Plantago asiatica mosaic virus	1	1	1
Plasmid ColE1	3	3	2
Plasmid F	6	4	6
Plasmid RSF1010	1	1	1
Plasmodium berghei str. ANKA	12	11	11
Plasmodium falciparum (malaria parasite P. falciparum)	5	5	1
Plasmodium falciparum 3D7	260	218	143
Plasmodium vivax SaI-1	2	2	2
Plasmodium yoelii yoelii str. 17XNL	1	1	1
Plum pox virus	1	1	1
Pneumonia virus of mice J3666	1	1	1
Poliovirus	13	13	1
Pongo abelii (Sumatran orangutan)	1	1	1
Porcine circovirus 2	1	1	1
Porcine epidemic diarrhea virus	4	4	2
Porcine reproductive and respiratory syndrome virus	10	9	4
Porphyromonas gingivalis ATCC 33277	15	11	11
Porphyromonas gingivalis W83	25	19	23
Potato leafroll virus	2	2	2
Potato virus A	2	2	1
Potato virus X	4	4	3
Potato virus Y	3	3	1
Prochlorococcus marinus subsp. marinus str. CCMP1375	1	1	1
Propionibacterium acnes KPA171202	1	1	1
Proteus mirabilis HI4320	4	3	4
Proteus vulgaris	2	2	2
Prunus necrotic ringspot virus	1	1	1
Pseudoalteromonas haloplanktis TAC125	4	3	4
Pseudoalteromonas phage PM2	1	1	1
Pseudomonas aeruginosa	3	2	3
Pseudomonas aeruginosa PA7	6	4	6
Pseudomonas aeruginosa PAO1	388	282	252
Pseudomonas aeruginosa UCBPP-PA14	26	18	25
Pseudomonas fluorescens Pf-5	5	4	5
Pseudomonas fluorescens Pf0-1	2	2	2
Pseudomonas phage phi8	1	1	1
Pseudomonas putida	2	2	2
Pseudomonas putida F1	3	3	3
Pseudomonas putida KT2440	43	29	33
Pseudomonas sp. ADP	1	1	1
Pseudomonas stutzeri A1501	1	1	1
Pseudomonas syringae pv. phaseolicola 1448A	4	4	4
Pseudomonas syringae pv. syringae	2	1	2
Pseudomonas syringae pv. syringae B728a	5	5	5
Pseudomonas syringae pv. tomato str. DC3000	32	27	24
Puumala virus	2	2	1
Pyrobaculum aerophilum str. IM2	3	3	3
Pyrococcus abyssi GE5	10	9	9
Pyrococcus furiosus DSM 3638	34	32	29
Pyrococcus horikoshii OT3	61	55	50
Rabbit fibroma virus	1	1	1
Rabbit hemorrhagic disease virus	3	3	1
Rabies virus	9	9	5
Ralstonia eutropha H16	14	11	12
Ralstonia metallidurans CH34	4	4	3
Ralstonia solanacearum GMI1000	12	9	11
Raspberry bushy dwarf virus	1	1	1
Rattus norvegicus (Norway rat)	36029	25600	4736
Red clover necrotic mosaic virus	2	2	1
Respiratory syncytial virus	21	19	6
Reston ebolavirus	2	2	2
Reticuloendotheliosis virus	1	1	1
Rhizobium etli CFN 42	9	6	9
Rhizobium leguminosarum bv. viciae 3841	1	1	1
Rhizobium sp. NGR234	6	5	4
Rhodobacter sphaeroides 2.4.1	44	27	23
Rhodobacter sphaeroides ATCC 17029	6	6	3
Rhodococcus equi	3	1	3
Rhodococcus jostii RHA1	2	2	2
Rhodopseudomonas palustris CGA009	7	7	7
Rhodopseudomonas palustris TIE-1	1	1	1
Rhodospirillum rubrum ATCC 11170	7	5	6
Rice dwarf virus	1	1	1
Rice stripe virus	1	1	1
Rickettsia conorii str. Malish 7	2	1	2
Rickettsia prowazekii str. Madrid E	2	2	2
Rickettsia typhi str. Wilmington	1	1	1
Rift Valley fever virus	3	3	2
Rinderpest virus (strain Kabete O)	3	3	2
Rotavirus A	3	3	3
Rotavirus C	1	1	1
Rotavirus G3	3	2	3
Rous sarcoma virus	10	10	2
Rubella virus	4	3	2
Ruegeria pomeroyi DSS-3	2	2	1
SARS coronavirus	146	132	11
Saccharomyces cerevisiae (baker's yeast)	6646	4318	2330
Saccharopolyspora erythraea NRRL 2338	3	2	2
Saimiriine herpesvirus 2 (Herpesvirus saimiri)	1	1	1
Salinibacter ruber DSM 13855	1	1	1
Salmo salar (Atlantic salmon)	14	12	13
Salmonella enterica subsp. arizonae serovar 62:z4,z23:--	1	1	1
Salmonella enterica subsp. enterica serovar Bovismorbificans	1	1	1
Salmonella enterica subsp. enterica serovar Choleraesuis	1	1	1
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67	4	4	4
Salmonella enterica subsp. enterica serovar Dublin	1	1	1
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109	2	2	2
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91	3	3	2
Salmonella enterica subsp. enterica serovar Newport str. SL254	2	2	1
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150	4	4	3
Salmonella enterica subsp. enterica serovar Typhi str. CT18	33	21	30
Salmonella enterica subsp. enterica serovar Typhi str. Ty2	11	11	8
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	369	261	226
Sapovirus Mc10	3	3	1
Schizosaccharomyces pombe (fission yeast)	864	585	479
Schizosaccharomyces pombe 972h-	4	4	3
Sclerotinia sclerotiorum 1980 UF-70	1	1	1
Semliki forest virus	16	16	2
Sendai virus	13	13	7
Sepik virus	2	2	1
Serratia marcescens	1	1	1
Sesbania mosaic virus	3	3	2
Sheeppox virus	1	1	1
Shewanella amazonensis SB2B	1	1	1
Shewanella oneidensis MR-1	26	20	19
Shewanella sp. ANA-3	7	1	7
Shigella dysenteriae Sd197	1	1	1
Shigella flexneri	29	26	13
Shigella flexneri 2a str. 2457T	7	7	7
Shigella flexneri 2a str. 301	17	14	15
Shigella flexneri 5 str. 8401	3	2	3
Shigella sonnei Ss046	2	1	2
Shrimp white spot syndrome virus	10	7	7
Simian foamy virus	1	1	1
Simian immunodeficiency virus	28	27	7
Simian immunodeficiency virus SIV-mnd 2	4	3	3
Simian virus 40	34	32	5
Simian-Human immunodeficiency virus	1	1	1
Sin Nombre virus	2	2	1
Sindbis virus	10	10	3
Singapore grouper iridovirus	1	1	1
Sinorhizobium meliloti 1021	63	43	54
Solanum lycopersicum (tomato)	88	73	73
Sonchus yellow net virus	1	1	1
Sorangium cellulosum 'So ce 56'	1	1	1
Soybean mosaic virus	2	2	1
Spinacia oleracea (spinach)	2	1	2
Spiroplasma citri	1	1	1
Spodoptera frugiperda MNPV	1	1	1
Spodoptera frugiperda ascovirus 1a	1	1	1
Spodoptera litura NPV	4	4	2
Staphylococcus aureus	11	10	8
Staphylococcus aureus RF122	12	9	5
Staphylococcus aureus subsp. aureus COL	29	24	22
Staphylococcus aureus subsp. aureus MRSA252	34	33	23
Staphylococcus aureus subsp. aureus MW2	13	9	11
Staphylococcus aureus subsp. aureus Mu3	5	4	3
Staphylococcus aureus subsp. aureus Mu50	27	21	20
Staphylococcus aureus subsp. aureus N315	25	22	23
Staphylococcus aureus subsp. aureus NCTC 8325	18	16	15
Staphylococcus aureus subsp. aureus ST398	1	1	1
Staphylococcus aureus subsp. aureus USA300_FPR3757	13	11	8
Staphylococcus aureus subsp. aureus USA300_TCH1516	11	10	10
Staphylococcus aureus subsp. aureus str. Newman	13	11	12
Staphylococcus epidermidis ATCC 12228	2	2	2
Staphylococcus epidermidis RP62A	13	12	10
Staphylococcus haemolyticus JCSC1435	2	1	2
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	1	1	1
Staphylococcus sciuri	1	1	1
Staphylococcus warneri	1	1	1
Stenotrophomonas maltophilia K279a	1	1	1
Streptococcus agalactiae 2603V/R	6	4	4
Streptococcus agalactiae A909	8	7	6
Streptococcus agalactiae NEM316	7	6	6
Streptococcus equi subsp. zooepidemicus MGCS10565	1	1	1
Streptococcus gordonii str. Challis substr. CH1	6	6	6
Streptococcus mutans UA159	66	51	56
Streptococcus phage Cp-1	1	1	1
Streptococcus pneumoniae ATCC 700669	2	2	2
Streptococcus pneumoniae CGSP14	3	1	3
Streptococcus pneumoniae D39	36	30	24
Streptococcus pneumoniae R6	60	49	48
Streptococcus pneumoniae TIGR4	11	11	9
Streptococcus pyogenes	2	2	2
Streptococcus pyogenes M1 GAS	40	31	25
Streptococcus pyogenes MGAS10394	3	3	3
Streptococcus pyogenes MGAS315	6	5	6
Streptococcus pyogenes MGAS5005	9	7	8
Streptococcus pyogenes MGAS6180	1	1	1
Streptococcus pyogenes MGAS8232	6	5	5
Streptococcus pyogenes MGAS9429	4	4	4
Streptococcus pyogenes NZ131	1	1	1
Streptococcus pyogenes str. Manfredo	2	2	2
Streptococcus suis 05ZYH33	2	2	2
Streptococcus suis 98HAH33	1	1	1
Streptococcus suis BM407	1	1	1
Streptococcus suis P1/7	2	1	1
Streptococcus thermophilus CNRZ1066	3	2	3
Streptomyces avermitilis MA-4680	3	3	3
Streptomyces clavuligerus ATCC 27064	3	3	3
Streptomyces coelicolor A3(2)	100	76	84
Streptomyces phage phiC31	1	1	1
Streptomyces venezuelae	1	1	1
Strongylocentrotus purpuratus (purple sea urchin)	49	41	45
Sudan ebolavirus	1	1	1
Sugarcane mosaic virus	2	2	1
Suid herpesvirus 1 (Pseudorabies virus)	24	19	17
Sulfolobus acidocaldarius DSM 639	4	2	4
Sulfolobus islandicus	5	3	3
Sulfolobus islandicus filamentous virus	1	1	1
Sulfolobus solfataricus P2	72	63	50
Sulfolobus tokodaii str. 7	13	13	13
Sus scrofa (pig)	1399	1073	783
Synechococcus elongatus PCC 6301	12	12	11
Synechococcus elongatus PCC 7942	10	8	7
Synechococcus sp. CC9311	1	1	1
Synechococcus sp. CC9902	1	1	1
Synechococcus sp. PCC 7002	1	1	1
Synechococcus sp. RCC307	1	1	1
Synechococcus sp. WH 8102	9	7	6
Synechocystis sp. PCC 6803	134	115	99
Tacaribe virus	3	2	3
Taeniopygia guttata (zebra finch)	9	9	6
Takifugu rubripes (torafugu)	19	17	18
Tanapox virus	1	1	1
Tetrahymena thermophila	2	2	2
Theilovirus	1	1	1
Thermoanaerobacter tengcongensis MB4	13	11	11
Thermobifida fusca YX	2	1	2
Thermococcus kodakarensis KOD1	16	13	10
Thermoplasma acidophilum DSM 1728	16	15	15
Thermosynechococcus elongatus BP-1	24	21	18
Thermotoga maritima MSB8	87	76	79
Thermotoga petrophila RKU-1	1	1	1
Thermus thermophilus HB27	27	24	25
Thermus thermophilus HB8	92	86	82
Thogoto virus	1	1	1
Tick-borne encephalitis virus	3	3	1
Tobacco etch virus	1	1	1
Tobacco mosaic virus	11	11	3
Tobacco rattle virus	2	2	2
Tomato aspermy virus	2	2	1
Tomato bushy stunt virus	11	9	3
Tomato golden mosaic virus	1	1	1
Tomato leaf curl New Delhi virus	1	1	1
Tomato leaf curl virus	1	1	1
Tomato mosaic virus	1	1	1
Tomato spotted wilt virus	2	2	1
Tomato yellow leaf curl Sardinia virus	1	1	1
Tomato yellow leaf curl virus	1	1	1
Toxoplasma gondii ME49	2	2	2
Transmissible gastroenteritis virus	2	2	2
Treponema denticola ATCC 35405	9	6	6
Treponema pallidum subsp. pallidum str. Nichols	8	6	8
Tribolium castaneum (red flour beetle)	31	19	28
Trichodesmium erythraeum IMS101	2	1	2
Trichomonas vaginalis G3	2	2	2
Triticum aestivum (bread wheat)	74	61	60
Trypanosoma brucei TREU927	73	60	65
Trypanosoma cruzi strain CL Brener	31	31	26
Tula virus	1	1	1
Turkey coronavirus	1	1	1
Turnip crinkle virus	1	1	1
Turnip mosaic virus	3	3	1
Turnip yellow mosaic virus	1	1	1
UR2 sarcoma virus	1	1	1
Ureaplasma parvum serovar 3 str. ATCC 700970	1	1	1
Ustilago maydis 521	7	6	7
Vaccinia virus	75	62	51
Variola virus (smallpox virus)	1	1	1
Venezuelan equine encephalitis virus	2	2	2
Vesicular stomatitis Indiana virus	19	16	5
Vibrio cholerae AM-19226	5	2	5
Vibrio cholerae MJ-1236	2	2	2
Vibrio cholerae MO10	1	1	1
Vibrio cholerae O1 biovar El Tor str. N16961	49	38	40
Vibrio cholerae O395	26	21	24
Vibrio fischeri ES114	12	9	9
Vibrio harveyi ATCC BAA-1116	2	2	1
Vibrio parahaemolyticus RIMD 2210633	18	14	11
Vibrio vulnificus CMCP6	8	5	8
Vibrio vulnificus YJ016	1	1	1
Visna/Maedi virus	1	1	1
Vitis vinifera (wine grape)	6	4	6
West Nile virus	27	26	2
Wheat streak mosaic virus	1	1	1
Wolbachia endosymbiont of Drosophila melanogaster	1	1	1
Wolinella succinogenes DSM 1740	6	2	4
Xanthobacter autotrophicus Py2	1	1	1
Xanthomonas axonopodis pv. citri str. 306	13	12	11
Xanthomonas campestris pv. campestris str. 8004	18	12	17
Xanthomonas campestris pv. campestris str. ATCC 33913	24	15	20
Xanthomonas campestris pv. campestris str. B100	2	2	2
Xanthomonas campestris pv. vesicatoria str. 85-10	8	8	7
Xanthomonas oryzae pv. oryzae KACC10331	8	7	8
Xanthomonas oryzae pv. oryzae PXO99A	3	3	3
Xenopus (Silurana) tropicalis (western clawed frog)	96	77	92
Xenopus laevis (African clawed frog)	1189	894	730
Xylella fastidiosa 9a5c	3	3	3
Xylella fastidiosa Temecula1	4	3	4
Yaba monkey tumor virus	1	1	1
Yaba-like disease virus	1	1	1
Yarrowia lipolytica CLIB122	5	3	5
Yellow fever virus	5	5	1
Yersinia enterocolitica	20	19	15
Yersinia enterocolitica subsp. enterocolitica 8081	7	5	5
Yersinia pestis	4	4	2
Yersinia pestis Angola	1	1	1
Yersinia pestis CO92	14	13	12
Yersinia pestis KIM 10	34	28	26
Yersinia pestis biovar Microtus str. 91001	2	2	2
Yersinia phage PY54	1	1	1
Yersinia pseudotuberculosis IP 31758	1	1	1
Yersinia pseudotuberculosis IP 32953	15	10	12
Yersinia pseudotuberculosis PB1/+	6	4	3
Yersinia pseudotuberculosis YPIII	8	1	8
Zaire ebolavirus	17	16	6
Zea mays (maize)	151	131	124
Zucchini yellow mosaic virus	2	2	1
Zymomonas mobilis subsp. mobilis ZM4	5	4	4
Totals	473847	284280	52436