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Report for CCDS49834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49834.1 Public Mus musculus 16 Slc12a8 16 104 75 CCDS HistoryNCBI Gene:171286Re-query CCDS DB by CCDS ID:49834.1Re-query CCDS DB by GeneID:171286

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Sequence IDs included in CCDS 49834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000059056 ENSMUSP00000062337 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059056Link to Ensembl Protein Viewer:ENSMUSP00000062337Re-query CCDS DB by Nucleotide ID:ENSMUST00000059056Re-query CCDS DB by Protein ID:ENSMUSP00000062337
Original member Current member EBI,WTSI ENSMUST00000121925 ENSMUSP00000112439 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121925Link to Ensembl Protein Viewer:ENSMUSP00000112439Re-query CCDS DB by Nucleotide ID:ENSMUST00000121925Re-query CCDS DB by Protein ID:ENSMUSP00000112439
Original member Current member EBI,WTSI OTTMUST00000067507 OTTMUSP00000033981 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000067507Link to Vega Protein Viewer:OTTMUSP00000033981Re-query CCDS DB by Nucleotide ID:OTTMUST00000067507Re-query CCDS DB by Protein ID:OTTMUSP00000033981
Original member Current member NCBI NM_134251.2 NP_599012.2 Accepted alive Link to Nucleotide Sequence:NM_134251.2Link to Protein Sequence:NP_599012.2Re-query CCDS DB by Nucleotide ID:NM_134251Re-query CCDS DB by Protein ID:NP_599012Link to BLink:NP_599012.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_599012.2 705 Q8VI23-1 705 100% 0 0

Chromosomal Locations for CCDS 49834.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 16Link to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16

Chromosome Start Stop Links
16 33518329 33518376 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33534864 33535010 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33540852 33541043 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33550883 33551114 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33590252 33590365 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33606166 33606253 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33608145 33608232 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33617108 33617254 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33624554 33625175 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33646563 33646660 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33649818 33649935 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33658197 33658257 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16
16 33662925 33663087 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16Link to Vega Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2118 nt):
ATGGCCCAGAGGTCTCCGCAAGAACTCTTCCACGAGGCAGCCCAGCAGGGCATCCTGGCCCAGCCCCAGC
CC
TGGTGGAAGATCCAGCTGTTCATGTGGGAGCCGGTGCTGTTTGGGACCTGGGATGGTGTGTTCACATC
C
TGCATGATCAACATTTTTGGCGTTGTCCTTTTCTTGAGGACCGGCTGGCTGGTGGGAAACACAGGTGTG
CTC
CTGGGCTTGCTCCTGGTGTCCTTCGTCGTCCTCGTGGCCCTCATCACCGTGCTGTCGGGCATTGGTG
TC
GCAGAGCATGGCGGGATCAGCAGTGGCGGTGTCTACTCCATGATCTCCTCGGTGCTTGGTGGGCAGAT
G
GGAGGCACTGTGGGGCTGCTCTATGTATTTGGACAGTGTGTTGCAGGTGCTATGTACATCACCGGCTTT
GCG
GAGTCCATCTCAGATCTGCTGGGACTTGGGGACATCTGGGCAGTGCGTGGAATTTCAGTTGCTGTGC
TT
CTGGCTTTGCTGGGCATCAACCTGGCAGGTGTCAAGTGGATTATCCGCCTCCAGCTGCTGCTGCTGCT
C
CTGCTGGCTGTCTCGACCCTGGACTTTGTGGTGGGCTCTTTCACCCACCTGGACCCAGAACATGGCTTT
ATT
GGCTACTCCCCAGAACTGCTACAGAGCAACATTCTGCCAGAGTACAGCCCCGGGGAGTCATTCTTCA
CT
GTGTTTGGGGTGTTCTTCCCTGCAGCTACAGGAGTCATGGCTGGCTTCAACATGGGAGGAGACCTGAG
A
GACCCTGCTGACAGTGTCCCCTTAGGCTCCCTAGCAGCTGTTGGCGTCTCGTGGTTTCTCTACATCATC
TTT
GCCTTCCTGCTTGGTGCCGTCTGTACCCGAGAGGCCCTCCGCTCTGACTTCCTGATAGCTGAAAAGG
TG
TCTCTGGTTGGTTTCCTCTTCCTATTGGGCCTGTACATCTCATCCCTGGCTTCCTGTATGGGGGGACT
C
TATGGCGCACCCCGGATCCTGCAGTGCATCGCCCAGGACAAAGTCATCCCTGCACTCGCCTTTCTGGCG
AAT
GGGAAAGGGCCAAATAAAACACCGGTAGCAGCCATCTGCCTGACCAGCTTGGTGACCATGGCCTTTG
TC
CTGGTGGGTCAGGTGAATGTTCTGGCGCCCGTTGTCACCATCAATTTCATGCTGACCTACATCATGGT
G
GACTACTCTTACTTCGCCCTCTCCATGGCTCACTGTGGCCTCGCCCCATCTCCTGAGCCCGTCCCCAGA
CAA
GGCCCAGATACTCTGCACTGCTCTGAGCACCTGCTCCAGGACAGGGCTCCCAGCTACGGCTCTGATG
TC
CCTGCCAGAAGCCTCTCTGAGGGCACCCTGCTGGAGTTCACCAAGGACATGGATCAGTTCCTCCAGCC
A
ATAGAGGAACTGGAGAGTCGTCAGCTTGGGTCAAGAGAAGGAAACAACCCAAAGAATCAGAAGCGCAAG
GGT
AAGAAAGGCGCCAAGCAAACCCTACAAGATAGCTTCCTCTTGGACCCTGGGTCTCCTTTGTCCTTTC
CT
ACGAGGACTTCTGAGAGGTTGTCTGTTGCCTTCTGTGGGGAGCAAGAGTCCTATCAGAAGCAGCAGAC
T
TCTAGGAGTGAATCACATGACCATCTTGTTCCTGATCTACGCAACCAGCCTAGAGTGAACAGAGAAGAT
TTC
TTTCTGAAATGCAGACTTCAGGAACAAGAGATCCAGAGAAGACCAAGTGTTTTCTATGCTTGCATGT
GT
AACCCCTGGGTCTCCCTGTTAGGGGCTCTTGCATCCCTGCTCATCATGTTTGTGATCCAGTGGCTCTA
T
ACCCTAGCTAGTATGGGTGTTGCTGCCCTTGTGTATTTCTACATTGGCCAGGCAAGTCCAGGCCTTTAC
CTC
GGATCAGCATCAAACTTCAGCTTTTTCCAATGGATGAAGTCCTTCTTGGTCCCCTCCTGCAGGAGCC
TG
AGGTCCGCCCAGGAGCAAATCATCTTGGCGCCATCACCAGCCAAGGTTGACATGGCAATGACTCAGCT
T
ACCCAGGACAATGCAGACTTCGCCACCCGAGATCGTTACCACCACTCCTCCTTCCTGAGCCGGGAGCAG
TTG
ATGCCTCCCTACTAG


Translation (705 aa):
MAQRSPQELFHEAAQQGILAQPQPWWKIQLFMWEPVLFGTWDGVFTSCMINIFGVVLFLRTGWLVGNTGV
L
LGLLLVSFVVLVALITVLSGIGVAEHGGISSGGVYSMISSVLGGQMGGTVGLLYVFGQ
CVAGAMYITGF
A
ESISDLLGLGDIWAVRGISVAVLLALLGINLAGVKWIIRLQLLLLLLLAVSTLDFVVGSFTHLDP
EHGF
I
GYSPELLQSNILPEYSPGESFFTVFGVFFPAAT
GVMAGFNMGGDLRDPADSVPLGSLAAVGVSWFLYII
F
AFLLGAVCTREALRSDFLIAEK
VSLVGFLFLLGLYISSLASCMGGLYGAPRILQCIAQDKVIPALAFLA
N
G
KGPNKTPVAAICLTSLVTMAFVLVGQVNVLAPVVTINFMLTYIMVDYSYFALSMAHCGLAPSPEPVPR
Q
GPDTLHCSEHLLQDRAPSYGSDVPARSLSEGTLLEFTKDMDQFLQPIEELESRQLGSREGNNPKNQKRK
G
KKGAKQTLQDSFLLDPGSPLSFPTRTSERLSVAFCGEQESYQKQQTSRSESHDHLVPDLRNQPRVNRE
D
F
FLKCRLQEQEIQRRPSVFYACMCNPWVSLLG
ALASLLIMFVIQWLYTLASMGVAALVYFYIGQASPGLY
L
GSASNFSFFQWMKSFLVPSCRSLRSAQEQIILAPSPAKVDMAMTQLTQDNADFATRDRYHHSSFLSREQ
L
MPPY




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