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Report for CCDS26504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26504.1 Public Mus musculus 13 Omd 16 104 75 CCDS HistoryNCBI Gene:27047Re-query CCDS DB by CCDS ID:26504.1Re-query CCDS DB by GeneID:27047See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 26504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000065494 ENSMUSP00000065706 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065494Link to Ensembl Protein Viewer:ENSMUSP00000065706Re-query CCDS DB by Nucleotide ID:ENSMUST00000065494Re-query CCDS DB by Protein ID:ENSMUSP00000065706
Original member Current member NCBI NM_012050.2 NP_036180.1 Accepted alive Link to Nucleotide Sequence:NM_012050.2Link to Protein Sequence:NP_036180.1Re-query CCDS DB by Nucleotide ID:NM_012050Re-query CCDS DB by Protein ID:NP_036180Link to BLink:NP_036180.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036180.1 423 O35103 423 100% 0 0

Chromosomal Locations for CCDS 26504.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 13Link to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49589476 49590415 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49592056 49592387 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGGCTTTTTAAGTCCAATATATGTCCTTTTCTTCTGTTTTGGAGTTAGAGTATACTGCCAATATGAAG
CT
TACCGATGGGATGACGATTATGACCAAGAGCCAAATGAGGATTATGATCCAGAATTCCAATTTCATCA
A
AATATTGAATATGGAGTTCCCTTTTATAATAATATTTTAGGTTGTGCTAAGGAATGCTTCTGTCCAACT
AAC
TTTCCAACATCAATGTACTGTGACAATCGTAAACTCAAGACTATCCCAATTATTCCAATGCACATTC
AG
CAACTCAACCTTCAGTTCAATGACATTGAGGCTGTGACTGCAAATTCATTCATCAATGCAACTCATCT
T
AAAGAAATTAACCTTAGCCACAACAAAATTAAATCTCAAAAGATTGATTATGGTGTATTCGCTAAACTT
TCA
AATCTACAACAACTTCATCTAGAGCACAATAACCTAGAAGAATTTCCATTTCCACTTCCAAAATCTT
TG
GAAAGACTCCTTCTTGGTTATAATGAAATCTCCATACTTCCAACAAATGCCATGGACGGGCTGGTGAA
T
GTGACTATGCTTGACCTCTGCTATAATCATCTTTCTGATTCGATGTTAAAAGAAAAGACCCTTTCCAAA
ATG
GAAAAATTAATGCAGCTCAACCTATGTAATAACAGATTAGAATCAATGCCCCTTGGATTGCCTTCAT
CA
CTTATGTATCTATCTTTAGAAAATAATTCAATTTCATCTATACCAGACAATTATTTTGACAAACTTCC
A
AAACTTCATGCTCTAAGAATATCACACAACAAACTGGAAGACATTCCATATGACATCTTTAATCTTTCC
AAT
CTTATAGAACTCAACGTTGGACACAATAAATTGAAGCAAGCATTCTACATTCCAAGGAATTTGGAAC
AT
CTATACCTACAAAATAATGAAATAGAAAGCATCAATGTGACAATGATATGTCCTTCTCCTGATCCAGT
A
CACCATCACCATTTAACATACCTTCGTGTGGACCAAAATAAGCTGAAAGAACCAATAAGTTCATACATC
TTC
TTCTGCTTCCCTCGTATACACAGTATTTATTATGGTGAGCAGAGGAGTACTAACGGTGAAACAATTC
AA
CTGAAGACCCAAGTTTTCAGGAGCTACCAAGAGGAGGAAGAGGAAGACGACCATGACAGTCAGGACAA
C
ACTCTTGAGGGTCAAGAAGTATCAGATGAGCACTATAATTCTCATTACTATGAGATGCAAGAGTGGCAA
GAT
ACTATATAG


Translation (423 aa):
MGFLSPIYVLFFCFGVRVYCQYEAYRWDDDYDQEPNEDYDPEFQFHQNIEYGVPFYNNILGCAKECFCPT
N
FPTSMYCDNRKLKTIPIIPMHIQQLNLQFNDIEAVTANSFINATHLKEINLSHNKIKSQKIDYGVFAKL
S
NLQQLHLEHNNLEEFPFPLPKSLERLLLGYNEISILPTNAMDGLVNVTMLDLCYNHLSDSMLKEKTLSK
M
EKLMQLNLCNNRLESMPLGLPSSLMYLSLENNSISSIPDNYFDKLPKLHALRISHNKLEDIPYDIFNLS
N
LIELNVGHNKLKQAFYIPRNLEHLYLQNNEIE
SINVTMICPSPDPVHHHHLTYLRVDQNKLKEPISSYI
F
FCFPRIHSIYYGEQRSTNGETIQLKTQVFRSYQEEEEEDDHDSQDNTLEGQEVSDEHYNSHYYEMQEWQ
D
TI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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