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Report for CCDS22800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22800.1 Public Mus musculus 9 Casp12 23 108 98 CCDS HistoryNCBI Gene:12364Re-query CCDS DB by CCDS ID:22800.1Re-query CCDS DB by GeneID:12364See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22800.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027009.10 ENSMUSP00000027009.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027009.10Link to Ensembl Protein Viewer:ENSMUSP00000027009.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027009Re-query CCDS DB by Protein ID:ENSMUSP00000027009
Original member NCBI NM_009808.4 NP_033938.3 Updated not alive Link to Nucleotide Sequence:NM_009808.4Link to Protein Sequence:NP_033938.3Re-query CCDS DB by Nucleotide ID:NM_009808Re-query CCDS DB by Protein ID:NP_033938
Current member NCBI NM_009808.5 NP_033938.3 Accepted alive Link to Nucleotide Sequence:NM_009808.5Link to Protein Sequence:NP_033938.3Re-query CCDS DB by Nucleotide ID:NM_009808Re-query CCDS DB by Protein ID:NP_033938Link to BLAST:NP_033938.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033938.3 419 O08736 419 100% 0 0

Chromosomal Locations for CCDS 22800.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 5345519 5345525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5346482 5346733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5348899 5348958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5350400 5350477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5352197 5352291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5352672 5352845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5353634 5353868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5354534 5354683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5358246 5358355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5358725 5358823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCGGCCAGGAGGACACATGAAAGAGATCCAATCTACAAGATCAAAGGTTTGGCCAAGGACATGCTGG
ATGGGGTTTTTGATGACCTGGTGGAGAAGAATGTTTTAAATGGAGATGAGTTACTCAAAATAGGGGAAAG
TGCGAGTTTCATCCTGAACAAGGCTGAGAATCTGGTTGAGAACTTCTTAGAGAAAACAGACATGGCAGGA
AAAATATTTGCTGGCCACATTGCCAATTCCCAGGAACAGCTGAGTTTACAATTTTCTAATGATGAGGATG
ATGGACCTCAGAAGATATGTACACCTTCTTCTCCATCAGAATCCAAGAGAAAAGTAGAGGATGATGAAAT
GGAGGTAAATGCTGGATTGGCCCATGAATCACATCTAATGCTGACAGCTCCTCATGGACTCCAGAGCTCA
GAAGTCCAAGATACACTGAAGCTTTGTCCACGTGATCAGTTTTGTAAGATAAAGACAGAAAGGGCAAAAG
AGATATATCCAGTGATGGAGAAGGAGGGACGAACACGTCTGGCTCTCATCATCTGCAACAAAAAGTTTGA
CTACCTTTTTGATAGAGATAATGCTGATACTGACATTTTGAACATGCAAGAACTACTTGAAAATCTTGGA
TACTCTGTGGTGTTAAAGGAAAACCTTACAGCTCAGGAAATGGAGACAGAGTTAATGCAGTTTGCTGGCC
GTCCAGAGCACCAGTCCTCAGACAGCACATTCCTGGTGTTTATGTCCCATGGCATCCTGGAAGGAATCTG
TGGGGTGAAGCACCGAAACAAAAAGCCAGATGTTCTTCATGATGACACTATCTTCAAAATTTTCAACAAC
TCTAACTGTCGGAGTCTGAGAAACAAACCCAAGATTCTCATCATGCAGGCCTGCAGAGGCAGATATAATG
GAACTATTTGGGTATCCACAAACAAAGGGATAGCCACTGCTGATACAGATGAGGAACGTGTGTTGAGCTG
TAAATGGAATAATAGTATAACAAAGGCCCATGTGGAGACAGATTTCATTGCTTTCAAATCTTCTACCCCA
CATAATATTTCTTGGAAGGTAGGCAAGACTGGTTCCCTCTTCATTTCCAAACTCATTGACTGCTTCAAAA
AGTACTGTTGGTGTTATCATTTGGAGGAAATTTTTCGAAAGGTTCAACACTCATTTGAGGTCCCAGGTGA
ACTGACCCAGATGCCCACTATTGAGAGAGTATCCATGACACGCTATTTCTACCTTTTTCCCGGGAATTAG

Translation (419 aa):
MAARRTHERDPIYKIKGLAKDMLDGVFDDLVEKNVLNGDELLKIGESASFILNKAENLVENFLEKTDMAG
KIFAGHIANSQEQLSLQFSNDEDDGPQKICTPSSPSESKRKVEDDEMEVNAGLAHESHLMLTAPHGLQSS
EVQDTLKLCPRDQFCKIKTERAKEIYPVMEKEGRTRLALIICNKKFDYLFDRDNADTDILNMQELLENLG
YSVVLKENLTAQEMETELMQFAGRPEHQSSDSTFLVFMSHGILEGICGVKHRNKKPDVLHDDTIFKIFNN
SNCRSLRNKPKILIMQACRGRYNGTIWVSTNKGIATADTDEERVLSCKWNNSITKAHVETDFIAFKSSTP
HNISWKVGKTGSLFISKLIDCFKKYCWCYHLEEIFRKVQHSFEVPGELTQMPTIERVSMTRYFYLFPGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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