NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics
Curation Guidelines

Collaborators
EBI
HGNC
MGI
NCBI
UCSC
WTSI

Contact Us
email CCDS

Genome Displays

Ensembl
Genome Browser
Map Viewer
VEGA

Related Resources
Gene
HomoloGene
RefSeq
UniGene

Report for CCDS28269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28269.1 Public Mus musculus 16 Chmp2b 16 104 75 CCDS HistoryNCBI Gene:68942Re-query CCDS DB by CCDS ID:28269.1Re-query CCDS DB by GeneID:68942See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 28269.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000004965 ENSMUSP00000004965 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004965Link to Ensembl Protein Viewer:ENSMUSP00000004965Re-query CCDS DB by Nucleotide ID:ENSMUST00000004965Re-query CCDS DB by Protein ID:ENSMUSP00000004965
Original member Current member NCBI NM_026879.2 NP_081155.1 Accepted alive Link to Nucleotide Sequence:NM_026879.2Link to Protein Sequence:NP_081155.1Re-query CCDS DB by Nucleotide ID:NM_026879Re-query CCDS DB by Protein ID:NP_081155Link to BLink:NP_081155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081155.1 213 Q8BJF9 213 100% 0 0

Chromosomal Locations for CCDS 28269.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 16Link to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 65540140 65540250 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65540420 65540526 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65545277 65545379 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65546849 65547043 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65550963 65551054 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65562475 65562508 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGCCTCCCTCTTCAAGAAGAAGACTGTGGACGATGTCATAAAGGAACAGAATCGAGAGCTGCGTGGCA
CC
CAGAGGGCCATCATCAGGGACCGAGCAGCCTTAGAGAAACAGGAGAAACAGCTGGAGTTAGAAATTAA
G
AAGATGGCCAAGATTGGTAATAAGGAAGCGTGCAGGGTTTTAGCTAAGCAGCTTGTCCACCTACGGAAA
CAG
AAGACAAGAACGTTCGCTGTAAGCTCAAAAGTCACCTCTATGTCCACACAAACGAAAGTGATGAATT
CC
CAGATGAAGATGGCCGGTGCCATGTCTACCACTGCAAAGACAATGCAAGCAGTCAACAAGAAAATGGA
T
CCACAGAAGACACTACAAACAATGCAGAATTTCCAGAAGGAAAACATGAAAATGGAAATGACTGAAGAA
ATG
ATCAATGACACCCTGGATGACATCTTTGATGGCTCTGATGATGAAGAAGAAAGCCAGGACATCGTGA
AT
CAAGTTCTTGATGAAATTGGGATTGAAATCTCTGGAAAGATGGCCAAAGCTCCATCGGCTGCAAGAAG
C
TTACCGTCTGCCTCCACTTCAAAGGCTACAATTTCTGATGAAGAGATTGAACGTCAACTCAAAGCTTTA
GGG
GTAGATTAG


Translation (213 aa):
MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRK
Q
KTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAK
TMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEE
M
INDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEIERQLKAL
G
VD




Links Key
 Links to:   History report
  BLink report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Map Viewer
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser