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Report for CCDS18483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18483.1 Public Mus musculus 4 Foxe3 19 105 81 CCDS HistoryNCBI Gene:30923Re-query CCDS DB by CCDS ID:18483.1Re-query CCDS DB by GeneID:30923See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 18483.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000050940 ENSMUSP00000050445 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050940Link to Ensembl Protein Viewer:ENSMUSP00000050445Re-query CCDS DB by Nucleotide ID:ENSMUST00000050940Re-query CCDS DB by Protein ID:ENSMUSP00000050445
Original member Current member EBI,WTSI OTTMUST00000019473 OTTMUSP00000008935 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000019473Link to Vega Protein Viewer:OTTMUSP00000008935Re-query CCDS DB by Nucleotide ID:OTTMUST00000019473Re-query CCDS DB by Protein ID:OTTMUSP00000008935
Original member Current member NCBI NM_015758.2 NP_056573.1 Accepted alive Link to Nucleotide Sequence:NM_015758.2Link to Protein Sequence:NP_056573.1Re-query CCDS DB by Nucleotide ID:NM_015758Re-query CCDS DB by Protein ID:NP_056573Link to BLink:NP_056573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056573.1 288 Q9QY14 288 100% 0 0

Chromosomal Locations for CCDS 18483.1

Assembly GRCm38.p3 (GCF_000001635.23)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 4Link to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4Link to Vega Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 114925147 114926013 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4Link to Vega Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGATGCGCAAGTCGCTTTCTCGGGCTTCCCGGCCTTGCCCTCGCTCACGCCGTCCGGGCCGCAGCTGC
CG
ACGCTGGCGGGAGCCGAACCGGGGCGCGAACCGGAGGAAGTGGTGGGCGGTGGGGACGCCGAGCCCAC
G
GCCGTGCCTGGCCCGGGGAAGCGACGGCGGCGGCCACTACAGCGTGGGAAGCCGCCCTACTCATACATC
GCG
CTCATTGCCATGGCCCTGGCGCACGCTCCCGGCCGCCGTCTAACGCTGGCAGCCATCTACCGCTTCA
TC
ACCGAGCGCTTCGCCTTCTACCGCGACAGCCCGCGCAAGTGGCAGAACAGCATCCGCCACAACCTCAC
C
CTCAACGACTGTTTCGTCAAGGTGCCGCGCGAGCCGGGCAATCCGGGCAAGGGCAACTACTGGACGCTC
GAT
CCCGCGGCCGCTGACATGTTCGACAACGGTAGCTTCCTGCGGCGCCGCAAGCGCTTCAAGCGCGCTG
AG
CTGCCCGCACCGCCGCCGCCGCCGCCGCCCTTCCCCTATGCGCCCTTCCCGCCCCCGCCAGCACCCGC
G
TCCGCTCCGCCCGCGCGCCTCTTCCGCCTGGACAGCCTGTTGGGCTTGCAGCCTGAGCCGCCGGGACCC
GTG
GCGCCCGAGCCGCCTTGCTGCGCCGCGCCCGACGCCGCCTTCCCGCCCTGTGCCGCCGCAGCCTCGC
CG
CCGCTCTACTCGCCAGCGTCCGAGCGCCTGGGGTTACCCGCGCCGCTGCCCGCCCAGCCTCTCCTGGC
C
TTGGCGGGATCGGCCGGCGCGCTCGGGCCGCTCGGAGCCGGGGAAGCCTACCTGAGACAGCCGGGCTTC
GCG
CCGGGGCTGGAGCGCTACCTGTGA


Translation (288 aa):
MDAQVAFSGFPALPSLTPSGPQLPTLAGAEPGREPEEVVGGGDAEPTAVPGPGKRRRRPLQRGKPPYSYI
A
LIAMALAHAPGRRLTLAAIYRFITERFAFYRDSPRKWQNSIRHNLTLNDCFVKVPREPGNPGKGNYWTL
D
PAAADMFDNGSFLRRRKRFKRAELPAPPPPPPPFPYAPFPPPPAPASAPPARLFRLDSLLGLQPEPPGP
V
APEPPCCAAPDAAFPPCAAAASPPLYSPASERLGLPAPLPAQPLLALAGSAGALGPLGAGEAYLRQPGF
A
PGLERYL




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