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Report for CCDS28813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28813.1 Public Mus musculus 17 Slc29a1 16 104 75 CCDS HistoryNCBI Gene:63959Re-query CCDS DB by CCDS ID:28813.1Re-query CCDS DB by GeneID:63959See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 28813.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000064889 ENSMUSP00000063757 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064889Link to Ensembl Protein Viewer:ENSMUSP00000063757Re-query CCDS DB by Nucleotide ID:ENSMUST00000064889Re-query CCDS DB by Protein ID:ENSMUSP00000063757
Original member Current member EBI,WTSI ENSMUST00000171847 ENSMUSP00000126703 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171847Link to Ensembl Protein Viewer:ENSMUSP00000126703Re-query CCDS DB by Nucleotide ID:ENSMUST00000171847Re-query CCDS DB by Protein ID:ENSMUSP00000126703
Original member Current member EBI,WTSI ENSMUST00000163492 ENSMUSP00000129242 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163492Link to Ensembl Protein Viewer:ENSMUSP00000129242Re-query CCDS DB by Nucleotide ID:ENSMUST00000163492Re-query CCDS DB by Protein ID:ENSMUSP00000129242
Original member Current member EBI,WTSI OTTMUST00000093907 OTTMUSP00000052188 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000093907Link to Vega Protein Viewer:OTTMUSP00000052188Re-query CCDS DB by Nucleotide ID:OTTMUST00000093907Re-query CCDS DB by Protein ID:OTTMUSP00000052188
Original member Current member EBI,WTSI OTTMUST00000093941 OTTMUSP00000052200 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000093941Link to Vega Protein Viewer:OTTMUSP00000052200Re-query CCDS DB by Nucleotide ID:OTTMUST00000093941Re-query CCDS DB by Protein ID:OTTMUSP00000052200
Original member Current member EBI,WTSI OTTMUST00000093944 OTTMUSP00000052203 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000093944Link to Vega Protein Viewer:OTTMUSP00000052203Re-query CCDS DB by Nucleotide ID:OTTMUST00000093944Re-query CCDS DB by Protein ID:OTTMUSP00000052203
Original member Current member NCBI NM_001199115.1 NP_001186044.1 Accepted alive Link to Nucleotide Sequence:NM_001199115.1Link to Protein Sequence:NP_001186044.1Re-query CCDS DB by Nucleotide ID:NM_001199115Re-query CCDS DB by Protein ID:NP_001186044Link to BLink:NP_001186044.1
Original member Current member NCBI NM_001199116.1 NP_001186045.1 Accepted alive Link to Nucleotide Sequence:NM_001199116.1Link to Protein Sequence:NP_001186045.1Re-query CCDS DB by Nucleotide ID:NM_001199116Re-query CCDS DB by Protein ID:NP_001186045Link to BLink:NP_001186045.1
Original member Current member NCBI NM_022880.3 NP_075018.1 Accepted alive Link to Nucleotide Sequence:NM_022880.3Link to Protein Sequence:NP_075018.1Re-query CCDS DB by Nucleotide ID:NM_022880Re-query CCDS DB by Protein ID:NP_075018Link to BLink:NP_075018.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186044.1 458 Q9JIM1-2 458 100% 0 0
NP_001186045.1 458 Q9JIM1-2 458 100% 0 0
NP_075018.1 458 Q9JIM1-2 458 100% 0 0

Chromosomal Locations for CCDS 28813.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 17Link to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45585671 45585782 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 45586094 45586305 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 45587228 45587313 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 45587562 45587670 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 45588289 45588386 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 45589002 45589074 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 45589208 45589305 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 45589414 45589548 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 45589681 45589820 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 45589923 45590125 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 45590257 45590338 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 45592179 45592207 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGACAACCAGTCACCAGCCTCAGGACAGGTATAAGGCAGTATGGCTTATCTTCTTTGTGCTGGGCCTGG
GG
ACACTGCTCCCCTGGAATTTTTTTATGACCGCAACCAAGTATTTCACAAACCGCCTGGACGTGTCCCA
G
AATGTGTCCTCGGACACTGATCAATCATGCGAAAGCACCAAGGCCTTGGCTGACCCCACAGTGGCCTTG
CCA
GCCCGGAGTTCTCTCAGTGCCATCTTCAACAATGTCATGACCCTGTGTGCCATGCTGCCCTTGCTGG
TC
TTCACCTGCCTCAACTCGTTTCTGCATCAGCGGATCTCTCAATCTGTTCGGATCTTGGGCAGCCTGCT
G
GCAATCCTGCTGGTATTCCTTGTCACTGCCGCCCTGGTGAAGGTGGAGATGGATGCTCTGATCTTCTTT
GTC
ATCACCATGATCAAGATTGTGCTCATCAATTCATTTGGTGCCATTTTGCAAGCCAGCCTTTTTGGTC
TG
GCAGGTGTCCTGCCAGCCAACTACACAGCCCCCATCATGAGTGGCCAGGGCCTGGCTGGCTTCTTCAC
C
TCTGTCGCCATGATCTGTGCCATTGCCAGTGGTTCTGAGCTGTCAGAAAGCGCCTTTGGCTACTTCATC
ACA
GCCTGTGCAGTTGTCATTTTGGCCATCCTGTGCTACCTGGCTCTGCCTCGGACGGAATTCTATCGCC
AT
TACCTGCAGCTCAACCTTGCGGGGCCTGCAGAGCAGGAGACCAAGTTGGATCTCATAAGAGAGGAGCC
A
AAAGGAAGAAGAGAGGAATCTGGGGTGCCAGGCCCCAACTCTCCACCCACCAACAGAAACCAGTCTATC
AAA
GCCATACTTAAGAGTATCTGTGTCCCGGCTCTGTCTGTCTGCTTCATCTTCACGGTTACCATTGGGT
TG
TTCCCTGCTGTGACTGCTGAGGTGGAATCCAGCATCGCAGGCACAAGTCCCTGGAAAAGCTACTTCAT
T
CCCGTGGCCTGTTTCTTGAATTTCAATGTCTTTGACTGGCTAGGCCGGAGCCTCACTGCTGTCTGCATG
TGG
CCTGGCCAGGATAGCCGCTGGCTGCCGGTTTTGGTCGCCTCGAGGATTGTGTTTATTCCCCTGCTGA
TG
CTCTGCAACGTGAAGGCTCGCCACTGCGGCGCGCAGCGGCACCACTTCGTCTTTAAGCATGACGCCTG
G
TTCATCGCCTTCATGGCTGCCTTTGCCTTCTCCAATGGCTACCTCGCCAGCCTCTGCATGTGCTTCGGG
CCC
AAGAAAGTCAAACCAGCTGAGGCGGAGACAGCAGGAAACATCATGTCCTTCTTTCTGTGTCTGGGCC
TG
GCTCTGGGAGCTGTGTTGTCCTTCTTGTTAAGGGCACTTGTGTGA


Translation (458 aa):
MTTSHQPQDRYKAVWLIFFVLGLGTLLPWNFFMTATKYFTNRLDVSQNVSSDTDQSCESTKALADPTVAL
P
ARSSLSAIFNNVMTLCAMLPLLVFTCLNSFLHQ
RISQSVRILGSLLAILLVFLVTAALVKVEMDALIFF
V
ITMIKIVLIN
SFGAILQASLFGLAGVLPANYTAPIMSGQGLAGFFTSVAMICAIASGSELSESAFGYFI
T
ACAVVILAILCYLALPRT
EFYRHYLQLNLAGPAEQETKLDLIREEPKGRREESGVPGPNSPPTNRNQSI
K
AILKS
ICVPALSVCFIFTVTIGLFPAVTAEVESSIAGTSPWKSYFIPVACFLNFNVFDWLGRSLTAVCM
W
PGQDSRWLPVLVASRIVFIPLLMLCNVKARHCGAQRHHFVFKHDAWFIAFMAAFAFSNGYLASLCMCFG
P
KKVKPAEAETAGNIMSFFLCLGLALGAVLSFLLRALV



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