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Report for CCDS40308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40308.1 Public Mus musculus 8 Ash2l 16 104 75 CCDS HistoryNCBI Gene:23808Re-query CCDS DB by CCDS ID:40308.1Re-query CCDS DB by GeneID:23808See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Sequence IDs included in CCDS 40308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000110609 ENSMUSP00000106239 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110609Link to Ensembl Protein Viewer:ENSMUSP00000106239Re-query CCDS DB by Nucleotide ID:ENSMUST00000110609Re-query CCDS DB by Protein ID:ENSMUSP00000106239
Original member Current member EBI,WTSI ENSMUST00000110610 ENSMUSP00000106240 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110610Link to Ensembl Protein Viewer:ENSMUSP00000106240Re-query CCDS DB by Nucleotide ID:ENSMUST00000110610Re-query CCDS DB by Protein ID:ENSMUSP00000106240
Original member Current member EBI,WTSI ENSMUST00000166078 ENSMUSP00000132546 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166078Link to Ensembl Protein Viewer:ENSMUSP00000132546Re-query CCDS DB by Nucleotide ID:ENSMUST00000166078Re-query CCDS DB by Protein ID:ENSMUSP00000132546
Original member Current member EBI,WTSI OTTMUST00000055229 OTTMUSP00000026422 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000055229Link to Vega Protein Viewer:OTTMUSP00000026422Re-query CCDS DB by Nucleotide ID:OTTMUST00000055229Re-query CCDS DB by Protein ID:OTTMUSP00000026422
Original member Current member EBI,WTSI OTTMUST00000055230 OTTMUSP00000026423 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000055230Link to Vega Protein Viewer:OTTMUSP00000026423Re-query CCDS DB by Nucleotide ID:OTTMUST00000055230Re-query CCDS DB by Protein ID:OTTMUSP00000026423
Original member Current member NCBI NM_001080793.2 NP_001074262.1 Accepted alive Link to Nucleotide Sequence:NM_001080793.2Link to Protein Sequence:NP_001074262.1Re-query CCDS DB by Nucleotide ID:NM_001080793Re-query CCDS DB by Protein ID:NP_001074262Link to BLink:NP_001074262.1
Original member Current member NCBI NM_001286207.1 NP_001273136.1 Accepted alive Link to Nucleotide Sequence:NM_001286207.1Link to Protein Sequence:NP_001273136.1Re-query CCDS DB by Nucleotide ID:NM_001286207Re-query CCDS DB by Protein ID:NP_001273136Link to BLink:NP_001273136.1

Chromosomal Locations for CCDS 40308.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 8Link to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 25817401 25817508 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25817604 25817663 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25818546 25818644 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25819626 25819718 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25822695 25822888 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25823139 25823306 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25827174 25827391 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25828766 25828859 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25831273 25831348 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25832640 25832735 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25833751 25833846 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25834960 25835054 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25836000 25836088 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8
8 25839743 25839861 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8Link to Vega Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGATACCCAGGCGGGCTCTGTGGATGAGGAGAATGGGCGGCAGTTGGGAGAAGTGGAGTTGCAGTGTG
GG
ATATGTACAAAATGGTTCACCGCTGACACCTTTGGAATAGACACGTCGTCATGTCTGCCTTTTATGAC
C
AACTACAGCTTCCATTGCAATGTGTGCCATCACAGTGGGAATACCTACTTTCTCCGGAAGCAAGCAAAT
TTA
AAAGAAATGTGCCTTAGTGCCTTGGCGAATTTGACGTGGCAGTCTCGAACACAGGATGAACATCCAA
AA
ACCATGTTCTCCAAAGATAAGGATATTATACCATTTATTGATAAATACTGGGAATGTATGACAACCAG
A
CAGAGACCTGGAAAAATGACTTGGCCCAATAACATTGTCAAAACAATGAGTAAGGAAAGAGATGTGTTC
TTG
GTAAAGGAACACCCTGACCCAGGAAGCAAAGACCCAGAAGAAGATTACCCCAAGTTTGGACTTTTGG
AT
CAGGATCTTAGTAATATTGGTCCTGCTTATGACAACCAGAAACAAAGCAGTGCTGTGTCTGCTAGTGG
G
AACCTAAATGGGGGGATCGCAGCCGGAAGCAGTGGGAAAGGAAGAGGAGCCAAGCGTAAGCAGCAAGAT
GGA
GGGACAACAGGGACCACCAAGAAGGCCAGAAGTGATCCTTTATTTTCTGCTCAGCGTCTCCCTCCTC
AT
GGCTATCCTTTGGAACATCCATTTAACAAAGATGGCTATCGGTATATTCTTGCTGAGCCCGATCCTCA
T
GCCCCCGACCCGGAGAAGCTTGAACTTGACTGCTGGGCGGGAAAGCCTATTCCTGGAGACCTTTACAGA
GCC
TGCTTATATGAACGAGTCTTGTTAGCCCTACATGATCGAGCTCCCCAGTTAAAGATCTCTGATGACC
GG
CTGACCGTGGTTGGAGAGAAGGGCTACTCCATGGTCCGGGCCTCTCATGGGGTACGCAAAGGGGCCTG
G
TACTTTGAAATCACTGTGGATGAGATGCCCCCAGACACTGCTGCCAGGCTGGGCTGGTCCCAGCCCTTA
G
GT
AACCTCCAAGCTCCCTTAGGCTATGATAAGTTTAGCTATTCTTGGCGGAGCAAGAAAGGCACCAAGT
TC
CACCAGTCCATTGGCAAGCACTATTCGTCTGGCTACGGACAAGGGGACGTCCTAGGGTTCTATATCAA
C
CTTCCCGAAGACACAGAGACAGCCAAGTCACTGCCGGACACCTACAAAGATAAGGCTTTGATAAAGTTC
AAG
AGTTATTTGTATTTTGAAGAAAAAGACTTTGTGGACAAAGCAGAGAAGAGCCTAAAACAGACCCCCC
AT
AGTGAGATAATATTTTATAAAAATGGTGTCAATCAGGGTGTGGCTTACAGAGATATTTTTGAAGGAGT
T
TACTTCCCAGCCATCTCACTGTACAAGAGCTGCACGGTTTCCATTAACTTTGGACCATCCTTCAAATAC
CCT
CCAAAGGATCTCACGTACCACCCTATGAGTGACATGGGCTGGGGCGCTGTGGTAGAACACACACTGG
CT
GATGTTTTGTATCACGTGGAGACAGAAGTGGACGGAAGACGTAGTCCACCCTGGGAACCCTAA


Translation (534 aa):
MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQAN
L
KEMCLSALANLTWQSRTQDEHPKTMFSKDK
DIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVF
L
VKEHPDPGSKDPEEDYPKFGLLDQ
DLSNIGPAYDNQKQSSAVSASGNLNGGIAAGSSGKGRGAKRKQQD
G
GTTGTTKKAR
SDPLFSAQRLPPHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYR
A
CLYERVLLALHDR
APQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPL
G
NLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF
K
SYLYFEEKDFVDKAEKSLKQTPHSE
IIFYKNGVNQGVAYRDIFEGVYFPAISLYKSCTVSINFGPSFKY
P
PKDLTYHP
MSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP



Links Key
 Links to:   History report
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