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Report for CCDS40979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40979.1 Public Mus musculus X Slc9a6 23 108 98 CCDS HistoryNCBI Gene:236794Re-query CCDS DB by CCDS ID:40979.1Re-query CCDS DB by GeneID:236794See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077741.11 ENSMUSP00000076922.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077741.11Link to Ensembl Protein Viewer:ENSMUSP00000076922.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077741Re-query CCDS DB by Protein ID:ENSMUSP00000076922
Original member NCBI NM_172780.4 NP_766368.2 Updated not alive Link to Nucleotide Sequence:NM_172780.4Link to Protein Sequence:NP_766368.2Re-query CCDS DB by Nucleotide ID:NM_172780Re-query CCDS DB by Protein ID:NP_766368
Current member NCBI NM_172780.5 NP_766368.2 Accepted alive Link to Nucleotide Sequence:NM_172780.5Link to Protein Sequence:NP_766368.2Re-query CCDS DB by Nucleotide ID:NM_172780Re-query CCDS DB by Protein ID:NP_766368Link to BLAST:NP_766368.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766368.2 702 A1L3P4 702 100% 0 0

Chromosomal Locations for CCDS 40979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 56609860 56610187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56620326 56620525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56622611 56622688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56622988 56623064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56623360 56623472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56628394 56628499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56633450 56633591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56634786 56634891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56635178 56635266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56638275 56638388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56643368 56643479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56645800 56645953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56651628 56651658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56654974 56655053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56658259 56658364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56661176 56661448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2109 nt):
ATGGCTGGGGCTCGGCGCGGCTGGCGGCTGGCGCCCGTTCGCCGTGGCGTCTGCGGGCCCCGGGCGCGTC
CGCTCATGCGGCCCCTTTGGTTGCTCTTCGCAGTGAGCTTCTTTGGCTGGACCGGGGCTCTGGACGGCTC
CGGGGGAACGACCAGAGCCATGGACGAGGAGATCGTGTCCGAGAAGCAGGCGGAGGAGAGCCATCGGCAG
GACAGCGCCAACCTGCTCATCTTCATCCTGCTGCTCACCCTCACCATTCTGACGATCTGGCTCTTCAAGC
ACCGCCGGGCCCGCTTCCTGCACGAAACCGGCCTTGCTATGATTTATGGTCTTTTGGTAGGCCTCGTGCT
TCGGTACGGCATTCATGTTCCAAGCGATGTGAATAATGTGACTCTGAGCTGTGAAGTGCAGTCAAGTCCA
ACTACCTTGTTGGTCAACGTCAGTGGAAAATTTTATGAGTATACGCTGAAAGGAGAGATTAGCTCACATG
AACTCAACAATGTTCAAGATAATGAAATGCTTAGGAAGGTTACTTTTGATCCAGAAGTCTTTTTCAACAT
ACTGCTTCCTCCTATCATATTTTATGCAGGGTACAGTCTCAAAAGGAGACATTTCTTCCGGAACCTTGGG
TCTATCTTAGCATATGCCTTTCTTGGAACAGCAATTTCTTGTTTCGTTATTGGGTCCATCATGTATGGCT
GTGTAACCCTGATGAAGGTGACCGGGCAGCTCGCGGGAGATTTTTACTTTACAGATTGCTTGCTGTTTGG
TGCCATTGTTTCAGCCACCGACCCAGTGACTGTTCTTGCCATCTTCCATGAGCTTCAAGTTGACGTTGAA
CTCTACGCTCTTCTCTTCGGGGAAAGTGTCCTCAATGACGCGGTTGCCATAGTGCTGTCCTCCTCAATAG
TGGCATACCAGCCAGCGGGAGACAACAGCCACACCTTTGACGTTACAGCCATGTTCAAATCTATTGGAAT
CTTCCTTGGGATCTTCAGTGGATCTTTTGCAATGGGTGCTGCAACAGGCGTGGTAACAGCTTTAGTGACA
AAGTTCACAAAGCTGAGAGAGTTCCAGCTGTTGGAGACAGGCCTTTTCTTCTTGATGTCCTGGAGCACCT
TTCTTCTGGCTGAAGCATGGGGTTTCACAGGTGTGGTTGCAGTATTGTTTTGTGGCATCACACAAGCACA
TTACACGTACAATAATTTGTCTACAGAGTCTCAGCATAGAACAAAGCAGTTGTTTGAGCTTCTCAATTTT
TTAGCGGAGAATTTCATCTTTTCCTACATGGGGCTGACGCTGTTCACCTTCCAGAATCACGTCTTTAACC
CAACATTTGTCGTAGGAGCATTCATTGCTATTTTCTTGGGAAGAGCTGCCAATATTTATCCCTTGTCTCT
CTTACTTAATTTGGGTAGAAGAAGTAAGATTGGATCAAATTTTCAACACATGATGATGTTTGCTGGTCTT
CGTGGTGCAATGGCATTTGCCTTGGCCATTCGAGATACTGCCACTTATGCACGACAAATGATGTTCAGCA
CCACACTTCTGATCGTGTTTTTTACTGTGTGGGTATTTGGTGGTGGCACCACTGCCATGCTGTCATGCCT
GCATATAAGGGTTGGTGTTGATTCAGACCAAGAACATTTGGGTGTTCCTGACAACGAAAGGAGAACCACC
AAAGCAGAGAGTGCCTGGCTCTTTCGGATGTGGTACAACTTCGATCATAACTATCTGAAGCCCCTGCTGA
CCCACAGTGGGCCTCCTCTGACTACCACACTCCCAGCCTGCTGTGGGCCAATCGCCAGGTGCCTGACCAG
CCCCCAAGCATATGAAAACCAGGAGCAGTTGAAAGATGATGACTCTGATCTCATTCTCAATGATGGTGAT
ATCAGTCTGACATATGGGGATTCTACTGTGAACACCGAGTCCGCAACAGCCAGCGCCCCAAGGAGATTTA
TGGGCAACAGTTCTGAAGATGCCTTGGACCGGGAGCTTACATTTGGGGACCACGAACTAGTCATTCGTGG
CACACGCCTGGTTCTTCCGATGGATGATTCTGAACCTGCGTTAAATTCATTAGATGATACGAGACACAGT
CCGGCCTAA

Translation (702 aa):
MAGARRGWRLAPVRRGVCGPRARPLMRPLWLLFAVSFFGWTGALDGSGGTTRAMDEEIVSEKQAEESHRQ
DSANLLIFILLLTLTILTIWLFKHRRARFLHETGLAMIYGLLVGLVLRYGIHVPSDVNNVTLSCEVQSSP
TTLLVNVSGKFYEYTLKGEISSHELNNVQDNEMLRKVTFDPEVFFNILLPPIIFYAGYSLKRRHFFRNLG
SILAYAFLGTAISCFVIGSIMYGCVTLMKVTGQLAGDFYFTDCLLFGAIVSATDPVTVLAIFHELQVDVE
LYALLFGESVLNDAVAIVLSSSIVAYQPAGDNSHTFDVTAMFKSIGIFLGIFSGSFAMGAATGVVTALVT
KFTKLREFQLLETGLFFLMSWSTFLLAEAWGFTGVVAVLFCGITQAHYTYNNLSTESQHRTKQLFELLNF
LAENFIFSYMGLTLFTFQNHVFNPTFVVGAFIAIFLGRAANIYPLSLLLNLGRRSKIGSNFQHMMMFAGL
RGAMAFALAIRDTATYARQMMFSTTLLIVFFTVWVFGGGTTAMLSCLHIRVGVDSDQEHLGVPDNERRTT
KAESAWLFRMWYNFDHNYLKPLLTHSGPPLTTTLPACCGPIARCLTSPQAYENQEQLKDDDSDLILNDGD
ISLTYGDSTVNTESATASAPRRFMGNSSEDALDRELTFGDHELVIRGTRLVLPMDDSEPALNSLDDTRHS
PA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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