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Report for CCDS25663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25663.1 Public Mus musculus 11 Galr2 16 104 75 CCDS HistoryNCBI Gene:14428Re-query CCDS DB by CCDS ID:25663.1Re-query CCDS DB by GeneID:14428

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 25663.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000055872 ENSMUSP00000054062 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055872Link to Ensembl Protein Viewer:ENSMUSP00000054062Re-query CCDS DB by Nucleotide ID:ENSMUST00000055872Re-query CCDS DB by Protein ID:ENSMUSP00000054062
Original member Current member EBI,WTSI OTTMUST00000008433 OTTMUSP00000004088 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000008433Link to Vega Protein Viewer:OTTMUSP00000004088Re-query CCDS DB by Nucleotide ID:OTTMUST00000008433Re-query CCDS DB by Protein ID:OTTMUSP00000004088
Original member Current member NCBI NM_010254.4 NP_034384.3 Accepted alive Link to Nucleotide Sequence:NM_010254.4Link to Protein Sequence:NP_034384.3Re-query CCDS DB by Nucleotide ID:NM_010254Re-query CCDS DB by Protein ID:NP_034384Link to BLink:NP_034384.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034384.3 371 O88854 371 100% 0 0

Chromosomal Locations for CCDS 25663.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 11Link to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

Chromosome Start Stop Links
11 116281486 116281850 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 116282911 116283661 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGAATGGCTCGGACAGCCAGGGGGCGGAGGACTCGAGCCAGGAAGGTGGCGGCGGCTGGCAGCCCGAGG
CG
GTCCTCGTACCCCTATTTTTCGCGCTCATCTTCCTCGTGGGCGCTGTGGGCAACGCGCTGGTGCTGGC
G
GTGCTGCTGCGCGGCGGCCAGGCGGTCAGCACCACGAACCTATTCATCCTCAACCTGGGTGTGGCCGAC
CTG
TGTTTCATCCTGTGCTGCGTGCCTTTCCAGGCCACCATCTATACCCTGGACGATTGGGTGTTTGGCT
CA
CTGCTCTGCAAGGCCGTTCATTTCCTCATCTTCCTCACTATGCACGCCAGCAGCTTCACGCTGGCCGC
T
GTCTCGCTGGACAGGTATCTGGCCATCCGCTACCCGCTGCACTCCCGAGAGTTGCGCACACCTCGAAAC
GCG
CTGGCGGCCATCGGGCTCATCTGGGGGCTAGCACTGCTCTTCTCCGGGCCCTACCTGAGCTACTACA
GT
CAGTCGCAGCTGGCCAATCTGACGGTGTGCCACCCAGCGTGGAGCGCACCACGACGTCGCGCCATGGA
C
CTCTGCACTTTTGTCTTTAGCTACCTGTTGCCAGTGCTGGTGCTCAGCCTGACCTATGCGCGCACCCTG
CAC
TACCTCTGGCGCACAGTTGACCCAGTAGCTGCAGGCTCAGGTTCCCAGCGCGCCAAGCGCAAGGTGA
CA
CGGATGATCGTCATCGTGGCGGTACTCTTCTGCCTCTGTTGGATGCCCCACCACGCGCTTATCCTCTG
C
GTGTGGTTTGGTCGCTTTCCGCTCACGCGTGCCACTTACGCCCTGCGCATCCTTTCACATCTAGTATCT
TAT
GCCAACTCGTGTGTCAACCCCATCGTTTATGCTCTGGTCTCCAAGCATTTCCGCAAAGGTTTCCGCA
AA
ATCTGCGCGGGCCTGCTACGCCGTGCCCCGAGGAGAGCTTCAGGCCGAGTGTGCATCCTGGCGCCTGG
A
AACCATAGTGGTGGCATGCTGGAACCTGAGTCCACAGACCTGACACAGGTGAGCGAGGCAGCCGGGCCC
CTC
GTCCCCGCACCCGCACTTCCCAACTGCACAACCTTGAGTAGAACCCTCGATCCAGCCTGTTAA


Translation (371 aa):
MNGSDSQGAEDSSQEGGGGWQPEAVLVPLFFALIFLVGAVGNALVLAVLLRGGQAVSTTNLFILNLGVAD
L
CFILCCVPFQATIYTLDDWVFGSLLCKAVHFLIFLTMHASSFTLAAVSLD
RYLAIRYPLHSRELRTPRN
A
LAAIGLIWGLALLFSGPYLSYYSQSQLANLTVCHPAWSAPRRRAMDLCTFVFSYLLPVLVLSLTYARTL
H
YLWRTVDPVAAGSGSQRAKRKVTRMIVIVAVLFCLCWMPHHALILCVWFGRFPLTRATYALRILSHLVS
Y
ANSCVNPIVYALVSKHFRKGFRKICAGLLRRAPRRASGRVCILAPGNHSGGMLEPESTDLTQVSEAAGP
L
VPAPALPNCTTLSRTLDPAC




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